Query= MSMg01no543_b19.b1 MSMg01no543_b19.b1 CHROMAT_FILE:
MSMg01no543_b19.b1 PHD_FILE: MSMg01no543_b19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:23:22 2005
(675 letters)
>mm_chr8_121504880_121505953
Length = 1074
Score = 1212 bits (627), Expect = 0.0
Identities = 660/671 (98%), Gaps = 1/671 (0%)
Strand = Plus / Plus
Query: 5 gaattctttacacagtgccccgtgtaaagaattaatttggctcaaaacgtccatgtgctg 64
|||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctttacacaatgccctgtgtaaagaattaatttggctcaaaacgtccatgtgctg 264
Query: 65 aggtggatccaatcctaagcagagtctatgaagatgttcaatggaacacccaaatctgtg 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aggtggatccaatcctaagcagagtctatgaagatgttcaatggaacacccaaatctgtg 324
Query: 125 gtcaggagcaaagcatgtgttgaagggtctttgtgttgagctccaggccccctctgctaa 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gtcaggagcaaagcatgtgttgaagggtctttgtgttgagctccaggccccctctgctaa 384
Query: 185 gtatgctcattagcatgcagccaataggagctgtgagaaccttgttgctgaagttgttgc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gtatgctcattagcatgcagccaataggagctgtgagaaccttgttgctgaagttgttgc 444
Query: 245 tgggggcaggggtgggaggcggggacagtggtcttatgcaccagactgacacattctggc 304
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tggggacaggggtgggaggcggggacagtggtcttatgcaccagactgacacattctggc 504
Query: 305 aatctagggaggtagatgctggtctcccagggaggtagatgctggtcccccagggaggta 364
|||||||||||||||||||| ||| |||||||| | |||||||||||||||||||| |||
Sbjct: 505 aatctagggaggtagatgct-gtcccccagggaagaagatgctggtcccccagggaagta 563
Query: 365 gatgctggtcccccagagaggtagatgttggtactagcaagaaattaatcttcaaagtgt 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 gatgctggtcccccagagaggtagatgttggtactagcaagaaattaatcttcaaagtgt 623
Query: 425 tggaaaacatcttgtccaagaaagcattgacttcttcttcagtatctagtacgctggcac 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 tggaaaacatcttgtccaagaaagcattgacttcttcttcagtatctagtacgctggcac 683
Query: 485 ccatcagtaacggcttgatgtatactgacaatgatgtgtccatgtaaagacagaactgag 544
||||||||||| ||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct: 684 ccatcagtaacagcttgatgtatactgacaacgatgtgtccatataaagacagaactgag 743
Query: 545 cagcctcccttggtcatgtgatgaagtactacccaataagctataagaagggctgtgaat 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 cagcctcccttggtcatgtgatgaagtactacccaataagctataagaagggctgtgaat 803
Query: 605 tagacttaggggaactaactcagctggcaagagcatcctggtatcttcttcctaccacct 664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 tagacttaggggaactaactcagctggcaagagcatcctggtatcttcttcctaccacct 863
Query: 665 attcccttttg 675
|||||||||||
Sbjct: 864 attcccttttg 874
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 675
Length of database: 1074
Length adjustment: 10
Effective length of query: 665
Effective length of database: 1064
Effective search space: 707560
Effective search space used: 707560
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no543_b19.g1 MSMg01no543_b19.g1 CHROMAT_FILE:
MSMg01no543_b19.g1 PHD_FILE: MSMg01no543_b19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:23:22 2005
(569 letters)
>mm_chr8_121681411_121682379
Length = 969
Score = 1062 bits (549), Expect = 0.0
Identities = 564/569 (99%)
Strand = Plus / Minus
Query: 1 ctttaaggtgcaattcctcaacctgttagccagattgttttgggatatagttaggataat 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 769 ctttaaggtgcaattcctcaacctgttagccagattgttttgggatatagttaggataac 710
Query: 61 taggtggcttctcagagtgatttgcactccgctggctgcaaggaggtcctttgaactttt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 709 taggtggcttctcagagtgatttgcactccgctggctgcaaggaggtcctttgaactttt 650
Query: 121 gggtgcacctcttctgtccctgttctctagcattggcgtgttatgtttgctttattataa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 649 gggtgcacctcttctgtccctgttctctagcattggcgtgttatgtttgctttattataa 590
Query: 181 tgccaggccaggagacagaaggctgtgacagggagagaggacttcgggtgggacgatggg 240
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 589 tgccaggccaggagacagaaggctgtgacagggagagaggatttcgggtgggacgatggg 530
Query: 241 acaagtggagctggtgatggtttggtagtcactgtctacctcacacgggtgtctcttcaa 300
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 acaagtagagctggtgatggtttggtagtcactgtctacctcacacgggtgtctcttcaa 470
Query: 301 aatctggctctgcatttcctgatgagaccacaccttcagcatatgcaactggttcccact 360
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 469 aatctggctctgcatttcctgatgagaccacgccttcagcatatgcaactggttcccact 410
Query: 361 cttagaggccctcaaatgacctccacctctcaaatgttccatagaggggcaaagaacgca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 cttagaggccctcaaatgacctccacctctcaaatgttccatagaggggcaaagaacgca 350
Query: 421 agaccaagggaatttgctcagccaggtcccatgggtgaccttgagagcacattctgtgta 480
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 349 agaccaagggaatttgctcagccaggtcccatgggtgaccttgagagcgcattctgtgta 290
Query: 481 ccggggatctgaggttccccgactaaacaggacactagttgggaggtggtgaggaggtgg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 ccggggatctgaggttccccgactaaacaggacactagttgggaggtggtgaggaggtgg 230
Query: 541 tgagcttgcttctaatactcaaatctttt 569
|||||||||||||||||||||||||||||
Sbjct: 229 tgagcttgcttctaatactcaaatctttt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 569
Length of database: 969
Length adjustment: 10
Effective length of query: 559
Effective length of database: 959
Effective search space: 536081
Effective search space used: 536081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
