Query= MSMg01no543_i22.b1 MSMg01no543_i22.b1 CHROMAT_FILE:
MSMg01no543_i22.b1 PHD_FILE: MSMg01no543_i22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:23:58 2005
(592 letters)
>mm_chr8_49395336_49396329
Length = 994
Score = 1077 bits (557), Expect = 0.0
Identities = 582/591 (98%), Gaps = 2/591 (0%)
Strand = Plus / Plus
Query: 4 ggaattcagcttcgagggggtagtgttctctctggctgtcctcttttcttcttctccatc 63
|||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcagcttcgaggggggactgttctctctggctgtcctcttttcttcttctccatc 263
Query: 64 cccccagt--cctccccctcccccaccgacagttttcaacagaagagtttgaaaaaaaaa 121
|||||||| || |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 264 cccccagtcccccccccctcctccaccgacagttttcaacagaagagtttgaaaaaaaaa 323
Query: 122 tgtctggtatcctctggcttgtttagttattaaaatacttctgtggctctcccaactccc 181
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tgtctggtatcgtctggcttgtttagttattaaaatacttctgtggctctcccaactccc 383
Query: 182 aactcactgaataccattgttgaaggactggggaacaatggaccctatatacagtagctc 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 aactcactgaataccattgttgaaggactggggaacaatggaccctatatacagtagctc 443
Query: 242 cctcaccttgcctcttctgaatgacaatcaccaggcaaatcagggagtgcaatcaagcca 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 cctcaccttgcctcttctgaatgacaatcaccaggcaaatcagggagtgcaatcaagcca 503
Query: 302 tcagcagccacacattttcaacccatctaatctacagggatctggtttttttctttccaa 361
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 504 tcagcagccacacattttcaacccatctaatctacagggatctgttttttttctttccaa 563
Query: 362 cagacactgaagcagtcactgtaccttagggacccaggctctggcacggactttgtttcc 421
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 564 cagacactgaagcagtcactgtaacttagggacccaggctctggcacggactttgtttcc 623
Query: 422 aggttcagccttccttacctccttcgttgtctttgctgtctgtacagagggtctccatgg 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 aggttcagccttccttacctccttcgttgtctttgctgtctgtacagagggtctccatgg 683
Query: 482 ctacgtcacagcctgctcctctccaccctggctggcaaacgcagtgccagccgttttggt 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 ctacgtcacagcctgctcctctccaccctggctggcaaacgcagtgccagccgttttggt 743
Query: 542 ccagtgtgcatctcccattgctgttgcacaagccggggcaaccctctgtca 592
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 ccagtgtgcatctcccattgctgttgcacaagccggggcaaccctctgtca 794
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 592
Length of database: 994
Length adjustment: 10
Effective length of query: 582
Effective length of database: 984
Effective search space: 572688
Effective search space used: 572688
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no543_i22.g1 MSMg01no543_i22.g1 CHROMAT_FILE:
MSMg01no543_i22.g1 PHD_FILE: MSMg01no543_i22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:23:58 2005
(490 letters)
>mm_chr8_49532889_49533779
Length = 891
Score = 839 bits (434), Expect = 0.0
Identities = 472/488 (96%), Gaps = 7/488 (1%)
Strand = Plus / Minus
Query: 7 ggaatctgggacagtagaagggacaagccagtcacaggactgtgtgcatctcaaagcagg 66
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
Sbjct: 691 ggaatctgggacagtagaagggacaagccagtcacaggactatgtgcatctcaaagcatg 632
Query: 67 ccatgcgaaagagctcgtatataaaatgatgcatgtttcgtgtttcccatggcatgtaga 126
|||||||||||||||||| |||||| ||||||||||| ||||||||||||||||||||||
Sbjct: 631 ccatgcgaaagagctcgtgtataaagtgatgcatgttccgtgtttcccatggcatgtaga 572
Query: 127 cataaatccacaaaacacagaatatactgaagaacctcagtgagagtcgtccccggtgtg 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 cataaatccacaaaacacagaatatactgaagaacctcagtgagagtcgtccccggtgtg 512
Query: 187 ggaaggggaacagagctgtctgagaacctgcaagaggacacttgtctagcaagggggggg 246
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 511 ggaaggggaacagagctgtctgagaacctgcgagaggacacttgtctagcaagggggggg 452
Query: 247 ggagtgttcaatgtctcgttttggatggctgtcagacattcacagtgcagaaatgcccct 306
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 ---gtgttcaatgtctcgttttggatggctgtcagacattcacagtgcagaaatgcccct 395
Query: 307 cataaaacacgtaagatctaggcactgtattccagttattgcatcaaaaagaccatgtga 366
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 cataaaacacgtaagatctaggcactgtattccagttattgcatcaaaaagaccatgtga 335
Query: 367 acctgtaccatgaaatccagagctaagcacgaagagaaaacttcagtggttcaaacacca 426
|||||||||||||||||||||||||| |||||||| ||||||| ||||||||||||||||
Sbjct: 334 acctgtaccatgaaatccagagctaaacacgaagaaaaaacttaagtggttcaaacacca 275
Query: 427 gaaaactgggatgc----tgaagtcagttcctacctagccttgaggggcaaaggttgtga 482
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 gaaaactgggatgctgaatgaagtcagttcctacctagccttgaggggcaaaggttgtga 215
Query: 483 gtgtacga 490
||||||||
Sbjct: 214 gtgtacga 207
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 490
Length of database: 891
Length adjustment: 10
Effective length of query: 480
Effective length of database: 881
Effective search space: 422880
Effective search space used: 422880
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
