BAC Information

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BAC

Clone NameMSMg01-543P11
Chromosome8 (Build37)
Map Location 17,660,014 - 17,660,601
singlet/doubletsinglet
Overlap genenone
Upstream geneCsmd1
Downstream geneLOC665638, LOC100040466, Mcph1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-543P11.T7 (MSMg01no543_p11.b1)MSMg01-543P11.TJ (MSMg01no543_p11.g1)
ACCAG609376AG609377
length754761
length of high quality
(start - end)
368 (185 - 552)588 (75 - 662)
definitionCHROMAT_FILE: MSMg01no543_p11.b1 PHD_FILE: MSMg01no543_p11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:24:29 2005CHROMAT_FILE: MSMg01no543_p11.g1 PHD_FILE: MSMg01no543_p11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:24:29 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCAGTAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCTTCTTTATGTCCTCTACCATCATCATGAGATATGCTTTTAAATC
CAGGTCTACCTTTTCAGGTGTGTTAGGGTGTCCTGGATTGGGCGAAGTGG
GCGTTCTGGGTTCTGATGATGGTGAGTGGTCCTGGCTTCTGTTAGTAGGA
TTCTTACGTTTACCTTTCGCCATCTGGCAATCTCTGGAGTTAGTTGTTAT
AGTTGTCTTTGTTAAAAGATTGTTCCTCTGTTGATTTTGTTACCCTCTAT
CAGCAGGCGTGGGAGACAAGCTCTCTTCTCTGAGTTTCAGTGGTCAGAGC
AGTCTCTGTAGGCAAGCTCTCCTCTCTCAGGGAAGGTGTACAGTTATCTG
GTGTTTGGACCTCCTCCTGGCTGAAGGTGAATGCCCAAAACAGGATCTTT
CCCAGAAGCTGTGTTGCTTTGGCCAGGAAGGTGGCCAGTTGTCTGGAGTC
TAAGATGTCGCAGCCTCAGAAGCTCTGTGGCTCTTGCCGGGAAGGTGGCT
GGTTGTCTAGAGCTGATGATGGTGCCGCCCCAGAATCTCTGCGACTCTCT
CGCCCGTCCCAGAAACGGCTGGCACTCTGTATTCCCCAGGGTCACTCGTG
TTTCCTGCCCTCCTTTGGATTCCGGAGTCAAGAAGGTTCCCTTTCGGCGC
CTGTGCCATTTATCTCTCTGGGCAGGGAGACCCCCGTGCTCTCACCTTAA
ACGG
CATGATAGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCATAGAGTGATGTGATTGTGTTACCC
AGGCACAAAGCACACCCACTGAGTACAAATGAGAGAGAGTGAAAATGTGT
AAACTTCTAATATTAGTTTAGTGTCTAGATCGGTTTTAAAAGAAACTGAG
TCATAAGACTATAATTTGATAAAGACACTTCCGGGGGTGAAAGGCTAACC
ATCATTGCTGTTTTGTGGCTTTTATTTCAACAGAGCCTCGAGTGACTTGG
TGGCTTTTCATGGCTGTAGTGAGAGTTAATAGATTACTGTAAATAGGAGA
TTGGCTTATGCACATGGCTTTAAGCTTAGCATCTACGGCTTCAGTGAGAA
CTTGTGTTACAGATAATGACACAAAAAAAATTCTCAAGTGTCTCTATAGA
GAGGTAGGATGGGCGAATGTTCTGTGGCAACCACATTGCCTCTATCAGCT
GAGAGGGCCTGAAAGCAGAGACAGTCCCAGTCCTCAGCATATCTAATTAG
GAGATCTTGATTTTTATTCTCTTCTGTAATGAAAATGGCAAATGTTCCTT
GGATAAGTCACAGATTATGAGGCCAGGAGGTTATCTGCAAAAGACTATAC
AAGGGAGTACTAANACAACCATCTGAAGCTGAAACGATACTATGGGAACG
GACTGGAATGTACACGGCTTTCACTGGCCAAAGCTGGGCCTATTTAGGAT
TCAGGATAATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no543_p11.g1 MSMg01no543_p11.g1 CHROMAT_FILE:
MSMg01no543_p11.g1 PHD_FILE: MSMg01no543_p11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:24:29 2005
         (588 letters)



>mm_chr8_17659987_17660974
          Length = 988

 Score = 1108 bits (573), Expect = 0.0
 Identities = 585/589 (99%), Gaps = 2/589 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   catagagtgatgtgattgtgttacccaggcacaaagcacacccactgagtacaaatgaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 catagagtgatgtgattgtgttacccaggcacaaagcacacccactgagtacaaatgaga 556

                                                                       
Query: 61  gagagtg-aaaatgtgtaaacttctaatattagtttagtgtctagatcggttttaaaaga 119
           ||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 555 gagagtgaaaaatgtgtaaacttctaatattagtttagtgtctagattggttttaaaaga 496

                                                                       
Query: 120 aactgagtcataagactataatttgataaagacacttccgggggtgaaaggctaaccatc 179
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 495 aactgagtcataagactataatttgataaagatacttccgggggtgaaaggctaaccatc 436

                                                                       
Query: 180 attgctgttttgtggcttttatttcaacagagcctcgagtgacttggtggcttttcatgg 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 attgctgttttgtggcttttatttcaacagagcctcgagtgacttggtggcttttcatgg 376

                                                                       
Query: 240 ctgtagtgagagttaatagattactgtaaataggagattggcttatgcacatggctttaa 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 ctgtagtgagagttaatagattactgtaaataggagattggcttatgcacatggctttaa 316

                                                                       
Query: 300 gcttagcatctacggcttcagtgagaacttgtgttacagataatgacacaaaaaaaattc 359
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 315 gcttagcatctacggcttcagtgagaacttgtgttacagataatgacac-aaaaaaattc 257

                                                                       
Query: 360 tcaagtgtctctatagagaggtaggatgggcgaatgttctgtggcaaccacattgcctct 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 tcaagtgtctctatagagaggtaggatgggcgaatgttctgtggcaaccacattgcctct 197

                                                                       
Query: 420 atcagctgagagggcctgaaagcagagacagtcccagtcctcagcatatctaattaggag 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 196 atcagctgagagggcctgaaagcagagacagtcccagtcctcagcatatctaattaggag 137

                                                                       
Query: 480 atcttgatttttattctcttctgtaatgaaaatggcaaatgttccttggataagtcacag 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 136 atcttgatttttattctcttctgtaatgaaaatggcaaatgttccttggataagtcacag 77

                                                            
Query: 540 attatgaggccaggaggttatctgcaaaagactatacaagggagtacta 588
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 76  attatgaggccaggaggttatctgcaaaagactatacaagggagtacta 28


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 588
Length of database: 988
Length adjustment: 10
Effective length of query: 578
Effective length of database: 978
Effective search space:   565284
Effective search space used:   565284
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)