BAC Information

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BAC

Clone NameMSMg01-545F08
Chromosome8 (Build37)
Map Location 83,243,056 - 83,414,733
singlet/doubletdoublet
Overlap geneSmarca5, Gab1, LOC666237, LOC100039496
Upstream geneAnapc10, LOC100039439, Hhip, LOC546075, Gypa, Frem3
Downstream geneLOC234501, LOC100039518, Usp38, EG70793, LOC236010, LOC384852, Inpp4b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-545F08.T7 (MSMg01no545_f08.b1)MSMg01-545F08.TJ (MSMg01no545_f08.g1)
ACCAG610421AG610422
length749744
length of high quality
(start - end)		704 (36 - 739)612 (65 - 676)
definitionCHROMAT_FILE: MSMg01no545_f08.b1 PHD_FILE: MSMg01no545_f08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:26:16 2005CHROMAT_FILE: MSMg01no545_f08.g1 PHD_FILE: MSMg01no545_f08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:26:16 2005
singlet/doubletdoubletdoublet
BLAST hitpluralunique
Map location.(83,243,056 - 83,243,755)(83,414,165 - 83,414,733)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAGAAT
ACTGTAAGTAGAAATACTTTTGAGTACATGTAAATAATATTTAAGTAAAT
ATTTTTAAATTCATAAAAGAAAATAACAGGAACACAACATCACTGTCTAA
CAAAGTATCTGGGAAAGGTGTATGTAGGAAAGGCATTCCTGGTATCTTAT
GAAAAAGATGAAATTTCTAGGAAACCTACATGAAGTTAAAATGGTCGCTA
CTCTGCATGTTTATCATTTTCTATAAGAATTTAAGCCTAAAATTAAGGGA
AGAGGATTTGGCTGAAATTTTTAGATCTTTTTAAACATTTAACATTTCAA
CTTTAAAAACTGTTAGAATAGACATTTCAAAATGTTGTGTTTCATCCTCT
TAATTCTAGAATTTTTAAAGTCTTCATTACTTTACAATTAAACGCCAGTA
ATATAGATACCTTGTTCTTTCAGTTTAGGGAGTAGCTTGTCTAACACCAC
CATCTTGCCACTGTTGGTAACTAGATGCATATCTGTTGTGTACGGTGGAC
CAGGTTCAGCTCCATCGAAGAGATAAGGATGATTGCAGCATTTCCTCAAC
TGCATCAAAATGTTCAATAGCCTCATTTTGTCCATCTTCCCTGCTGAGTT
TAATATGTCTATATCTTTCATTAATATCCGAGTATACCTATTAAAAAGAA
AAATTGTTTAATATGCCTACCACATTGCATACTTAATCCCCTCACCCAN

GGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXTTGATTGTGTGCTGGAAGTTTTCTTCAGACTCTGAG
GTGAGTGGCTCCTTTCTTTTTCATGTCCCCACAATTTCCCTGTAATCTCT
TCTGCCTCAGTTATCTTATTCTTTACCAAAGATGTTTTAGTCTCTCAAGG
TCCTTTCTATTCAGAATCCCTCTGTACATTTTTGAGGGCAGGACTGTGTT
TGAGATGGCTGGTGTAATGATCGAGAATATCTTAAACTTATGGATTGATC
TCGGAAGAAATTGGTAACTTGGTAATGCATTTTGATTCACAAACTCTATA
TTTCTTACTAGATTCTTCTTTAAATTTAAATTTAAATTCTCTAAGCAATA
CCTCTCTAATATAAATATATGAATTTATAGCTGTGTATTGGCCTGTTTTT
TGTGTCAACTTGACACAAGCTAGAATCATCAGAAAGGCAAGATGAAAATG
CCTCCATGAGGTCCAGCATTATGGCTTTTTCTTAGTGATCAAGGTGAGAG
GGCCCAGCCCATGATGGTGGTGCTGTCCCTGGGCTGGTGGTCCTGGGTTC
TGTAAGGAAGCAGGCTGAGCAAGCCATGGAGAGCAAACCAGTAAGTAGCA
CCCCTCCATGACCTCTGCATCAGCTCCTGCCTCCAGGTTGCAGCCCTGCA
TGAGCTCCTGTCCTGACTTCCTCCAATGATGGACTATTATCTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no545_f08.b1 MSMg01no545_f08.b1 CHROMAT_FILE:
MSMg01no545_f08.b1 PHD_FILE: MSMg01no545_f08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:26:16 2005
         (704 letters)



>mm_chr8_83242852_83243955
          Length = 1104

 Score = 1346 bits (696), Expect = 0.0
 Identities = 699/700 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcagaatactgtaagtagaaatacttttgagtacatgtaaataatatttaagtaaa 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagaatactgtaagtagaaatacttttgagtacatgtaaataatatttaagtaaa 264

                                                                       
Query: 65  tatttttaaattcataaaagaaaataacaggaacacaacatcactgtctaacaaagtatc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tatttttaaattcataaaagaaaataacaggaacacaacatcactgtctaacaaagtatc 324

                                                                       
Query: 125 tgggaaaggtgtatgtaggaaaggcattcctggtatcttatgaaaaagatgaaatttcta 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tgggaaaggtgtatgtaggaaaggcattcctggtatcttatgaaaaagatgaaatttcta 384

                                                                       
Query: 185 ggaaacctacatgaagttaaaatggtcgctactctgcatgtttatcattttctataagaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ggaaacctacatgaagttaaaatggtcgctactctgcatgtttatcattttctataagaa 444

                                                                       
Query: 245 tttaagcctaaaattaagggaagaggatttggctgaaatttttagatctttttaaacatt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tttaagcctaaaattaagggaagaggatttggctgaaatttttagatctttttaaacatt 504

                                                                       
Query: 305 taacatttcaactttaaaaactgttagaatagacatttcaaaatgttgtgtttcatcctc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 505 taacatttcaactttaaaaactgttagaatagacatttcaaaatgttgtatttcatcctc 564

                                                                       
Query: 365 ttaattctagaatttttaaagtcttcattactttacaattaaacgccagtaatatagata 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ttaattctagaatttttaaagtcttcattactttacaattaaacgccagtaatatagata 624

                                                                       
Query: 425 ccttgttctttcagtttagggagtagcttgtctaacaccaccatcttgccactgttggta 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ccttgttctttcagtttagggagtagcttgtctaacaccaccatcttgccactgttggta 684

                                                                       
Query: 485 actagatgcatatctgttgtgtacggtggaccaggttcagctccatcgaagagataagga 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 actagatgcatatctgttgtgtacggtggaccaggttcagctccatcgaagagataagga 744

                                                                       
Query: 545 tgattgcagcatttcctcaactgcatcaaaatgttcaatagcctcattttgtccatcttc 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 tgattgcagcatttcctcaactgcatcaaaatgttcaatagcctcattttgtccatcttc 804

                                                                       
Query: 605 cctgctgagtttaatatgtctatatctttcattaatatccgagtatacctattaaaaaga 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 cctgctgagtttaatatgtctatatctttcattaatatccgagtatacctattaaaaaga 864

                                                   
Query: 665 aaaattgtttaatatgcctaccacattgcatacttaatcc 704
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 865 aaaattgtttaatatgcctaccacattgcatacttaatcc 904


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 704
Length of database: 1104
Length adjustment: 10
Effective length of query: 694
Effective length of database: 1094
Effective search space:   759236
Effective search space used:   759236
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)

Query= MSMg01no545_f08.g1 MSMg01no545_f08.g1 CHROMAT_FILE:
MSMg01no545_f08.g1 PHD_FILE: MSMg01no545_f08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:26:16 2005
         (612 letters)



>mm_chr8_83414165_83415176
          Length = 1012

 Score = 1100 bits (569), Expect = 0.0
 Identities = 569/569 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttgattgtgtgctggaagttttcttcagactctgaggtgagtggctcctttctttttcat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 ttgattgtgtgctggaagttttcttcagactctgaggtgagtggctcctttctttttcat 510

                                                                       
Query: 61  gtccccacaatttccctgtaatctcttctgcctcagttatcttattctttaccaaagatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 gtccccacaatttccctgtaatctcttctgcctcagttatcttattctttaccaaagatg 450

                                                                       
Query: 121 ttttagtctctcaaggtcctttctattcagaatccctctgtacatttttgagggcaggac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 ttttagtctctcaaggtcctttctattcagaatccctctgtacatttttgagggcaggac 390

                                                                       
Query: 181 tgtgtttgagatggctggtgtaatgatcgagaatatcttaaacttatggattgatctcgg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 tgtgtttgagatggctggtgtaatgatcgagaatatcttaaacttatggattgatctcgg 330

                                                                       
Query: 241 aagaaattggtaacttggtaatgcattttgattcacaaactctatatttcttactagatt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 aagaaattggtaacttggtaatgcattttgattcacaaactctatatttcttactagatt 270

                                                                       
Query: 301 cttctttaaatttaaatttaaattctctaagcaatacctctctaatataaatatatgaat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 cttctttaaatttaaatttaaattctctaagcaatacctctctaatataaatatatgaat 210

                                                                       
Query: 361 ttatagctgtgtattggcctgttttttgtgtcaacttgacacaagctagaatcatcagaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209 ttatagctgtgtattggcctgttttttgtgtcaacttgacacaagctagaatcatcagaa 150

                                                                       
Query: 421 aggcaagatgaaaatgcctccatgaggtccagcattatggctttttcttagtgatcaagg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 149 aggcaagatgaaaatgcctccatgaggtccagcattatggctttttcttagtgatcaagg 90

                                                                       
Query: 481 tgagagggcccagcccatgatggtggtgctgtccctgggctggtggtcctgggttctgta 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89  tgagagggcccagcccatgatggtggtgctgtccctgggctggtggtcctgggttctgta 30

                                        
Query: 541 aggaagcaggctgagcaagccatggagag 569
           |||||||||||||||||||||||||||||
Sbjct: 29  aggaagcaggctgagcaagccatggagag 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 612
Length of database: 1012
Length adjustment: 10
Effective length of query: 602
Effective length of database: 1002
Effective search space:   603204
Effective search space used:   603204
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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