Query= MSMg01no545_i18.b1 MSMg01no545_i18.b1 CHROMAT_FILE:
MSMg01no545_i18.b1 PHD_FILE: MSMg01no545_i18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:26:32 2005
(721 letters)
>mm_chr8_12165726_12166845
Length = 1120
Score = 1328 bits (687), Expect = 0.0
Identities = 708/715 (99%), Gaps = 1/715 (0%)
Strand = Plus / Minus
Query: 7 gaattctgtatttttggcctctttagtcaggggcttcttccagaagagtccattcctttt 66
||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 920 gaattctgtatttgaggcctctttagtcaggggcttcttccag-agagtccattcctttt 862
Query: 67 ccttgggtgggaaacactgtaacccaaaggtgagactgacatgagctttggcaatgagga 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 861 ccttgggtgggaaacactgtaacccaaaggtgagactgacatgagctttggcaatgagga 802
Query: 127 aaagatcctctgagataaaggccttgtcgagtggtgggaagggccaacccaaggggaaga 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 aaagatcctctgagataaaggccttgtcgagtggtgggaagggccaacccaaggggaaga 742
Query: 187 gagaacctgcagggatcgcaagtaactcagggggagtcttcctggactccatatgccaaa 246
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 741 gagaacctgcagggatcgcaagtaactcagggggagtctttctggactccatatgccaaa 682
Query: 247 ttcattttctcttgctttgtaaaataatatctgaccacacagatattcattattttaggt 306
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ttcattttctcttgctttgtaaaataatatctgaccacacagatattcattattttaggt 622
Query: 307 tccaattttgttttataagcacaatgcaccctcgttctctgcagtggtggatctgggcca 366
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tccaattttgttttataagcacaatgcaccctcgttctctgcagtggtggatctgggcca 562
Query: 367 cattgcttggtgggaacacacactgtcgaatgacgagatcttccaaccccaggttcgtgg 426
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cattgcttggtgggaacacacactgtcgaatgacgagatcttccaaccccaggttcgtgg 502
Query: 427 taatatctgaggctaggggtgcagggtgcctatgatgtgaatcctattgggctcccagag 486
|||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 501 taatatctaaggctaggggtgcagggtgcctatgatgtgaatcctactgggctcccagag 442
Query: 487 cagcctgcagtctgggtgccgggcagcagcccggtgaggcctccctcacctgatggcaag 546
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cagcctgcagtctgggtgccgggcagcagcccggtgaggcctccctcacctgatggcaag 382
Query: 547 cccactaccctgagcacagccacctccctggcaaacgcatcccaacccagtcggccagct 606
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 381 cccactaccctgagcacagccacctccctggcaaacgcgtcccaacccagtcggccagct 322
Query: 607 tttgtttcccgtgccctgagttctgcgtctctgagccctgagatttccctgggcggaagt 666
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttgtttcccgtgccctgagttctgcgtctctgagccctgagatttccctgggcggaagt 262
Query: 667 ggctgcacgcctccttcctttgtctcaagcagagggtttaatagctaaagtaact 721
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggctgcacgcctccttcctttgtctcaagcagagggtttaatagctaaagtaact 207
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 721
Length of database: 1120
Length adjustment: 10
Effective length of query: 711
Effective length of database: 1110
Effective search space: 789210
Effective search space used: 789210
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no545_i18.g1 MSMg01no545_i18.g1 CHROMAT_FILE:
MSMg01no545_i18.g1 PHD_FILE: MSMg01no545_i18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:26:33 2005
(560 letters)
>mm_chr8_11914547_11915506
Length = 960
Score = 1075 bits (556), Expect = 0.0
Identities = 559/560 (99%)
Strand = Plus / Plus
Query: 1 ttttggctttcattctgcactttgtcaacgccccctccccctcccagttcccgctggcaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttttggctttcattctgcactttgtcaacgccccctccccctcccagttcccgctggcaa 260
Query: 61 agccgcaggctcggagctttattcttgtgctgtgaaaggcaggattgctaactgtcagaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agccgcaggctcggagctttattcttgtgctgtgaaaggcaggattgctaactgtcagaa 320
Query: 121 ttacctttcagggtggtgtaatggaaactataaaggaaagttcactgtgctgtttcccag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttacctttcagggtggtgtaatggaaactataaaggaaagttcactgtgctgtttcccag 380
Query: 181 aggaacaacagaaaactggttttagtcagagaaaaccgttacttagtctctacatggaaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aggaacaacagaaaactggttttagtcagagaaaaccgttacttagtctctacatggaaa 440
Query: 241 ttgtgatttcttcatcttgtactcaggtggtctttcatctgatgtccgcctgtcttgacg 300
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 441 ttgtgatttcttcatcttgtactcgggtggtctttcatctgatgtccgcctgtcttgacg 500
Query: 301 cagagggggttcagggcaatttctgtctggtagggacagctgagtgccgtggcagaggcc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cagagggggttcagggcaatttctgtctggtagggacagctgagtgccgtggcagaggcc 560
Query: 361 aggtgggcagccctggagcctcagtggcagtgtctgggaaagatcacgtgacttggaggg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aggtgggcagccctggagcctcagtggcagtgtctgggaaagatcacgtgacttggaggg 620
Query: 421 ccctggccggaagcccaagcttttctctagttcctaagcagagaaaaacagctgtgctca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ccctggccggaagcccaagcttttctctagttcctaagcagagaaaaacagctgtgctca 680
Query: 481 ctcttctgtcttgaagacttggcgatttcttttcttccctcttctggaccccccagtgct 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ctcttctgtcttgaagacttggcgatttcttttcttccctcttctggaccccccagtgct 740
Query: 541 aagatggaagccagggcttt 560
||||||||||||||||||||
Sbjct: 741 aagatggaagccagggcttt 760
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 560
Length of database: 960
Length adjustment: 10
Effective length of query: 550
Effective length of database: 950
Effective search space: 522500
Effective search space used: 522500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
