BAC Information

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BAC

Clone NameMSMg01-545N01
Chromosome8 (Build37)
Map Location 64,079,923 - 64,080,578
singlet/doubletsinglet
Overlap genePalld
Upstream geneMfap3l, LOC100040679, 2700029M09Rik, Clcn3, B230317F23Rik, Nek1, Sh3rf1, EG664975, Cbr4
Downstream geneLOC100040872, BC013672, Anxa10, LOC100040775, LOC384830, LOC100040804, LOC665267
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-545N01.T7 (MSMg01no545_n01.b1)MSMg01-545N01.TJ (MSMg01no545_n01.g1)
ACCAG610787AG610788
length804741
length of high quality
(start - end)
112 (36 - 147)656 (64 - 719)
definitionCHROMAT_FILE: MSMg01no545_n01.b1 PHD_FILE: MSMg01no545_n01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:26:54 2005CHROMAT_FILE: MSMg01no545_n01.g1 PHD_FILE: MSMg01no545_n01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:26:54 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGGCCGCTAAACGACTCACTATTTGCGAGAGAGGGGCGGAATTCATTTAA
TGACTGAAGAATTTGATCGATCTCTCTCTCCTTTCTCTCTCCTTTCTCTC
TCCTCTTTCTCTCCTCTCTCTCTCTACTCTCTCTCCTCTCTCTCTCCACT
CTCGCTTCTCTCGCGCTCTGCCTCTCCTCCGCTCCTCCTCTCCTCGTCGC
CTCGAGGGGGCGTCGGGTGCCGCGGGGGGGGAGGGGGGGAGGAGGTAGGG
AGGGGGGGGAGGGGGGGGGGAGAGGGGGGGGGGAGGGGGGGGGGGGAGGG
GGGGAGCGGATGTTGTTGTAGGGATGGGAGCAGAGGCCGCGGGAGGGGAA
GGGGGGAGGGAGGGGGGGTGGGGGAGGGTGGGTGGGAGGCGGGGGGAAGG
GGGGGAGGGGGGGGGAGGAGGAGAGAGGGGAGAGGGGAGGGGGGGGGGGG
GAGAGGGAGGGGGAGGGAAAGAGGGGAGAGTAGAGTGGGGGAGGTAGGGG
GGGGGGGAGGGAAGGGAGGAGGGGGAGGTGGGAGGGGGGGGGGGGGAGGG
GGGGGAGGGGGGGGGGAGGAGGAGGAGATGAGGGGGGGGGGTGGGGGGAT
GGAGAAGGAGGAGGGGGAAGAGGGGAGGGGGGAGGGAGGGAGGGGGGGGA
GGGGGGGGGGGGGGGGAAGGGGGAGGGGAGGAAGAGAGGGGGGGAAGAGT
GTGTCGGGGGAAAGAGGGGAGAGAAGGGGAGGGGAAGAGGGGGGGGAGGG
GGAGAGGAGGGGGGTGGGGGGGGGCAGAAGGGGGGAGAAAGGGAAGGGGG
GGGA
GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTTCTTTGTGGAGATTTAAAACATATATATTAATATAT
GTACTATATATGTATATATAATTATACACATATATCATATATATTAATAT
ATAGTTAGGTATTATATATTTATATACATATATTATATATACATATCATA
TATATACATTGTATACATCCATAGTACATATACACTTTAATATATGTGTA
TGTATACATACATACGTACATATGTGCATAAGTAACTCAGTTCACTAGAT
GGAATGCAGAAGATTTGGGACTTTCACCTGTTGTACTATTTAGTCTGTAG
CAAAAAGGTTGAAGTTAGGAAGTTTAACTTGTTATGAAGCTATTTGGTTT
TTTATTTCAACAATTTGGGTGGAGGGATGTCTAGATGACAGGTTAAGGTA
ATTGCTTCCAATTGTTCCTTTATTTTGAGGCTCCATTATGTACCCTGGAG
CAAGACTGACAGACTCACACAAAGACTGGTAGCATGGCTGTCACCTTCAT
CCTACGTGACACTGCACTCCATAGTGGCAGGTACAGTGTTATGACCTCTA
CGTTTGCAGCTTGGCTGCTGTGGACAAGCAGAACATGATTCGCCAAATCC
TCTCCCTATGGATGTGGCAGAACTCATATGTTGGCCCCCAAAGGACAGAA
ACATTAGTTATTTAATTCTGACGAAGATCCTTATTTAATTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no545_n01.g1 MSMg01no545_n01.g1 CHROMAT_FILE:
MSMg01no545_n01.g1 PHD_FILE: MSMg01no545_n01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:26:54 2005
         (656 letters)



>mm_chr8_64079723_64080778
          Length = 1056

 Score = 1261 bits (652), Expect = 0.0
 Identities = 655/656 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttctttgtggagatttaaaacatatatattaatatatgtactatatatgtatatataatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttctttgtggagatttaaaacatatatattaatatatgtactatatatgtatatataatt 260

                                                                       
Query: 61  atacacatatatcatatatattaatatatagttaggtattatatatttatatacatatat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atacacatatatcatatatattaatatatagttaggtattatatatttatatacatatat 320

                                                                       
Query: 121 tatatatacatatcatatatatacattgtatacatccatagtacatatacactttaatat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tatatatacatatcatatatatacattgtatacatccatagtacatatacactttaatat 380

                                                                       
Query: 181 atgtgtatgtatacatacatacgtacatatgtgcataagtaactcagttcactagatgga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atgtgtatgtatacatacatacgtacatatgtgcataagtaactcagttcactagatgga 440

                                                                       
Query: 241 atgcagaagatttgggactttcacctgttgtactatttagtctgtagcaaaaaggttgaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atgcagaagatttgggactttcacctgttgtactatttagtctgtagcaaaaaggttgaa 500

                                                                       
Query: 301 gttaggaagtttaacttgttatgaagctatttggttttttatttcaacaatttgggtgga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gttaggaagtttaacttgttatgaagctatttggttttttatttcaacaatttgggtgga 560

                                                                       
Query: 361 gggatgtctagatgacaggttaaggtaattgcttccaattgttcctttattttgaggctc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gggatgtctagatgacaggttaaggtaattgcttccaattgttcctttattttgaggctc 620

                                                                       
Query: 421 cattatgtaccctggagcaagactgacagactcacacaaagactggtagcatggctgtca 480
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 621 cattatgtaccctggagcaagactgacagacccacacaaagactggtagcatggctgtca 680

                                                                       
Query: 481 ccttcatcctacgtgacactgcactccatagtggcaggtacagtgttatgacctctacgt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ccttcatcctacgtgacactgcactccatagtggcaggtacagtgttatgacctctacgt 740

                                                                       
Query: 541 ttgcagcttggctgctgtggacaagcagaacatgattcgccaaatcctctccctatggat 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ttgcagcttggctgctgtggacaagcagaacatgattcgccaaatcctctccctatggat 800

                                                                   
Query: 601 gtggcagaactcatatgttggcccccaaaggacagaaacattagttatttaattct 656
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 gtggcagaactcatatgttggcccccaaaggacagaaacattagttatttaattct 856


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 45
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 656
Length of database: 1056
Length adjustment: 10
Effective length of query: 646
Effective length of database: 1046
Effective search space:   675716
Effective search space used:   675716
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)