BAC Information

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BAC

Clone NameMSMg01-545O20
Chromosome8 (Build37)
Map Location 76,598,602 - 76,760,065
singlet/doubletdoublet
Overlap genenone
Upstream geneLarge, LOC100039001, LOC666134, Crry-ps, LOC666146
Downstream geneIsx, Hmgb2l1, Tom1, LOC100039134, Hmox1, Mcm5, Rasd2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-545O20.T7 (MSMg01no545_o20.b1)MSMg01-545O20.TJ (MSMg01no545_o20.g1)
ACCAG610872AG610873
length756743
length of high quality
(start - end)		650 (35 - 684)645 (64 - 708)
definitionCHROMAT_FILE: MSMg01no545_o20.b1 PHD_FILE: MSMg01no545_o20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:27:02 2005CHROMAT_FILE: MSMg01no545_o20.g1 PHD_FILE: MSMg01no545_o20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:27:02 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(76,598,602 - 76,599,247)(76,759,601 - 76,760,065)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTGCACA
TTATCAGGCAACAATGAGTATCACTAAGTATTATATAGTAATTCATGTTA
CTAAGAAAAATGATCAATGCATATATTAAATGTGCTATTGAATATGGCAA
ATTTCACATCAATTCAAAAATATTTTTTTCTGAAAAAAAAAAGGAGTAGT
TGGCAACATACTAATGAAAGGAGAGATGTCTGCAGACAGGAGAACACAGG
CAGACAGGCCAGGTCTCTGACAGGTCAAAATTCCTGCCAAAAGGGAGTGC
AGAACAGAGAGAATCTCATACACAACACACACATCTAGAACATCACTCAC
CCATTCATCCACTCACTACTCTGTTCATTTTTCTACAAATAGAAATTAAT
CATCCACTACCATCTAGCCATATCCTATGGGCATAAGAAAGAAAGAGAAA
AAAGATATTTTCTGTTATTTGTGGCAATTGTGAAGGATAGAGACTGAGAG
AATGGTCAATCAATGATTGCCTCAAATTGAGATGTATTCTGTGGGCAAGA
ACCAATCCCAGGCACTATTAATGATATCTTGTCACACTTGCAGACAGGAA
CCTAGCATAACTATTCTCTGAGAGTCTCCACCCAGCAGGCAATGGAAAGA
GATGCAGAGACTCACACCCAAACACTTGGTGTAGCTCAGGGAATTTTAAA
GGAGAGTTGGGAGAAGGATTGAGGGAGCCAAGGAGGACAGGGATTCTATA
GGAAGG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXAAAGACTAAATTAGAGGTAGCCTCTGTACTGAACTGC
TCCACTTCCCTGTACTGAAGACACAGTGGTGATGGTTTCTGCCTTTGAGG
GAAACCCCAAAAAGCAATGAATAGCTTCTCTTGGAAGATTTATTAGTGCT
TGCCTTGGCACTCAAGAAACAAATGTAGTAGCCCAGAATCTGCCTAGATC
TGTAAGACCATATGAATATACAAAAGAAGGGTTTACTGTTTTATTAAATA
TTTCCTTTTCCATAATCTTTTTTGTATCAATATTTTAAACTTTTAATTAA
AATATAATTACCTTTTGTTTGTTTGTTTGTTTGTTTTTTGAGACAGGGTT
TCTCTGTATAGCTCTGGCTGTCCTGGAACTCACTTTGTAGACCAGGCTGG
CCTCAAACTTAGAAATCCTCCTGCCTCTGCCTCCCAAGTGCTGGGATTAA
AGGCGTGCACCACCACATAATTACATTATTTATCCTCCCTTTTTCTCCTT
CTAATCCCTTTGATGTTTTCTTACCCCAAGCTCTCTCATCCTCTGAGTCA
CACTCAAAATGATGGCCTCTTTTTGTTTGGTTGTGGTATTTATATACATA
TATGTATACATATGCATATTATCAATTCCTATCATCCCCAGAAAAGACTA
ATTATATCCCCTTTCAGAGTTTCTTCAATTTTTTATTGATTAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no545_o20.b1 MSMg01no545_o20.b1 CHROMAT_FILE:
MSMg01no545_o20.b1 PHD_FILE: MSMg01no545_o20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:27:02 2005
         (650 letters)



>mm_chr8_76598398_76599447
          Length = 1050

 Score = 1234 bits (638), Expect = 0.0
 Identities = 644/646 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctgcacattatcaggcaacaatgagtatcactaagtattatatagtaattcatgt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctgcacattatcaggcaacaatgagtatcactaagtattatatagtaattcatgt 264

                                                                       
Query: 65  tactaagaaaaatgatcaatgcatatattaaatgtgctattgaatatggcaaatttcaca 124
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 265 tactaagaaaaatgatcaatgcatatattaaatgtgctattgaatatgccaaatttcaca 324

                                                                       
Query: 125 tcaattcaaaaatatttttttctgaaaaaaaaaaggagtagttggcaacatactaatgaa 184
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tcaattaaaaaatatttttttctgaaaaaaaaaaggagtagttggcaacatactaatgaa 384

                                                                       
Query: 185 aggagagatgtctgcagacaggagaacacaggcagacaggccaggtctctgacaggtcaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aggagagatgtctgcagacaggagaacacaggcagacaggccaggtctctgacaggtcaa 444

                                                                       
Query: 245 aattcctgccaaaagggagtgcagaacagagagaatctcatacacaacacacacatctag 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aattcctgccaaaagggagtgcagaacagagagaatctcatacacaacacacacatctag 504

                                                                       
Query: 305 aacatcactcacccattcatccactcactactctgttcatttttctacaaatagaaatta 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aacatcactcacccattcatccactcactactctgttcatttttctacaaatagaaatta 564

                                                                       
Query: 365 atcatccactaccatctagccatatcctatgggcataagaaagaaagagaaaaaagatat 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 atcatccactaccatctagccatatcctatgggcataagaaagaaagagaaaaaagatat 624

                                                                       
Query: 425 tttctgttatttgtggcaattgtgaaggatagagactgagagaatggtcaatcaatgatt 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tttctgttatttgtggcaattgtgaaggatagagactgagagaatggtcaatcaatgatt 684

                                                                       
Query: 485 gcctcaaattgagatgtattctgtgggcaagaaccaatcccaggcactattaatgatatc 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 gcctcaaattgagatgtattctgtgggcaagaaccaatcccaggcactattaatgatatc 744

                                                                       
Query: 545 ttgtcacacttgcagacaggaacctagcataactattctctgagagtctccacccagcag 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 ttgtcacacttgcagacaggaacctagcataactattctctgagagtctccacccagcag 804

                                                         
Query: 605 gcaatggaaagagatgcagagactcacacccaaacacttggtgtag 650
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 gcaatggaaagagatgcagagactcacacccaaacacttggtgtag 850


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 650
Length of database: 1050
Length adjustment: 10
Effective length of query: 640
Effective length of database: 1040
Effective search space:   665600
Effective search space used:   665600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no545_o20.g1 MSMg01no545_o20.g1 CHROMAT_FILE:
MSMg01no545_o20.g1 PHD_FILE: MSMg01no545_o20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:27:02 2005
         (645 letters)



>mm_chr8_76759601_76760645
          Length = 1045

 Score =  891 bits (461), Expect = 0.0
 Identities = 464/465 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaagactaaattagaggtagcctctgtactgaactgctccacttccctgtactgaagaca 60
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 465 aaagactaaattagaggtagcctctgtactgaactgctctacttccctgtactgaagaca 406

                                                                       
Query: 61  cagtggtgatggtttctgcctttgagggaaaccccaaaaagcaatgaatagcttctcttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 cagtggtgatggtttctgcctttgagggaaaccccaaaaagcaatgaatagcttctcttg 346

                                                                       
Query: 121 gaagatttattagtgcttgccttggcactcaagaaacaaatgtagtagcccagaatctgc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 gaagatttattagtgcttgccttggcactcaagaaacaaatgtagtagcccagaatctgc 286

                                                                       
Query: 181 ctagatctgtaagaccatatgaatatacaaaagaagggtttactgttttattaaatattt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 ctagatctgtaagaccatatgaatatacaaaagaagggtttactgttttattaaatattt 226

                                                                       
Query: 241 ccttttccataatcttttttgtatcaatattttaaacttttaattaaaatataattacct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 225 ccttttccataatcttttttgtatcaatattttaaacttttaattaaaatataattacct 166

                                                                       
Query: 301 tttgtttgtttgtttgtttgttttttgagacagggtttctctgtatagctctggctgtcc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 165 tttgtttgtttgtttgtttgttttttgagacagggtttctctgtatagctctggctgtcc 106

                                                                       
Query: 361 tggaactcactttgtagaccaggctggcctcaaacttagaaatcctcctgcctctgcctc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105 tggaactcactttgtagaccaggctggcctcaaacttagaaatcctcctgcctctgcctc 46

                                                        
Query: 421 ccaagtgctgggattaaaggcgtgcaccaccacataattacatta 465
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45  ccaagtgctgggattaaaggcgtgcaccaccacataattacatta 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 645
Length of database: 1045
Length adjustment: 10
Effective length of query: 635
Effective length of database: 1035
Effective search space:   657225
Effective search space used:   657225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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