BAC Information

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BAC

Clone NameMSMg01-546H20
Chromosome8 (Build37)
Map Location 95,182,523 - 95,378,119
singlet/doubletdoublet
Overlap geneIrx6, LOC100041325, Mmp2
Upstream geneAJ237917, LOC674324, LOC100040628, Irx3, 4933436C20Rik, Irx5
Downstream geneAytl1, Capns2, LOC100040752, Slc6a2, EG244595, LOC382044, Es1, LOC676523, Ces3, Es22, AU018778, Ces1, 2310039D24Rik, Ces7, Gnao1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-546H20.T7 (MSMg01no546_h20.b1)MSMg01-546H20.TJ (MSMg01no546_h20.g1)
ACCAG611302AG611303
length751749
length of high quality
(start - end)		716 (32 - 747)675 (64 - 738)
definitionCHROMAT_FILE: MSMg01no546_h20.b1 PHD_FILE: MSMg01no546_h20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:27:48 2005CHROMAT_FILE: MSMg01no546_h20.g1 PHD_FILE: MSMg01no546_h20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:27:48 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(95,377,409 - 95,378,119)(95,182,523 - 95,183,197)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXTTCAGGATCCGCGGAATTCATTGACA
AATCTCTACATGGGAGGTCGGGGGAGGGGGAGGACTAGAGGTAGAAGAAG
CTCCCACATTTATTGTGGCTATGTTTAGAAAGCAGGCACATCATCCCCTC
AAAATGTGTTTCCTTGGGGAGGTTTTAGGGGTGACGGAAGCTGCTGCTGC
TGCTGTCTGCGGTCTGTGGTGGCAGCTGCGGCAACTCTGGGTTTATGTTC
TTCATCATTTGGCCCCAGCTCAAATTTTGTTTCTAACAGCCGACTCTCTG
ATCCCGACCAACCACTTTCCTCTGGGCCCTGCTGCCTCTCCTCGGGAAGT
CTGTCCAGGTGATCCTTTAATGGCTCTTAGAAGAGGAGCAGGTGTGGCTG
CTGGGGCTGTCTTTCTCGGAAACTGAACTGCTATTTGGAAAAGGCAAAAG
CAGCTGGCTCCCACCGGGGATGAGGAACCGGACCCACAGAAGAGACGTGA
TTGACGCAATCGTTAGGATCCGCTCTCAGTGTAAAAGAAACAAATGGTTA
AAGGGAAAGTAAACCTCCAACAGACCCCATACCTACAGCAAGGGAATTGC
TGCTGCGTGCGTCCCAGTTCTTCCTCAAGAAGACCAAAACGACCTCTGTG
TCTAGGCTTTTCCCAGTGTAGATCAGGCACATAAGCCTACTCACTCTGGA
GTTCTTAGTTTAGCACCTCTGACCTTTCCAGCATGCATCCTCTGTGCCTT
A

GGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXCACATTCAAAACAGAGTGCAATGCAGATAGAGTGCCA
TGTTTCTGCTGCGTGCCTAATTGTCATGTCATCTCAGCTCCGTGAGACCC
CAGGATTTACAATTCTCCACCTCATGAAAGAGGTTAAACGGCTTGGCAAA
ATCACTCAGCTAGCAAAAGGCAGAAGCAAAACTTGAATATAGATTGCCTT
CCTCCACACTTGAGGCTGTTTTTGCCGCAGGATCCGAATTGTTCTAATTG
ACATTGTAGCCCCGAGTTTATATTTTTCATGCACCATGGAAATTCACTTC
AATTATGTAAATTGGAATATTTATTTAAGACACAGGAAAATACAATATAG
CCAAGAGCATACATGCGCATGAGCACACATACTAACAACGTAGACACAGA
AACCAAAGGGTCCGCTTTTAGTTCTGTCCTACTGTAATTCTCAACGTGGC
TAAGTGGGCATGCACTAGCGTTATTGCTATAACAGCATCATGAGGTCATA
ATTTAATGACTGATTTACCCAGTACAAAATGAAGACAACATCTCTAGCAT
AGTAGACTTGGCTGGGGAACAGAAGGGCTCCTGTAATTCAATTTTCTGGT
TAGTAAAAAGTGGCTACGTGGAATATTAGAGAGTAGGGAGGAACAATAAA
TTANGTGTATGAAGAGGAATATGGACAGGTTGCAAAAATAAAATGCTGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no546_h20.b1 MSMg01no546_h20.b1 CHROMAT_FILE:
MSMg01no546_h20.b1 PHD_FILE: MSMg01no546_h20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:27:48 2005
         (716 letters)



>mm_chr8_95377204_95378319
          Length = 1116

 Score = 1367 bits (707), Expect = 0.0
 Identities = 710/711 (99%)
 Strand = Plus / Minus

                                                                       
Query: 6   ggaattcattgacaaatctctacatgggaggtcgggggagggggaggactagaggtagaa 65
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 916 ggaattcattgacaaatcactacatgggaggtcgggggagggggaggactagaggtagaa 857

                                                                       
Query: 66  gaagctcccacatttattgtggctatgtttagaaagcaggcacatcatcccctcaaaatg 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 856 gaagctcccacatttattgtggctatgtttagaaagcaggcacatcatcccctcaaaatg 797

                                                                       
Query: 126 tgtttccttggggaggttttaggggtgacggaagctgctgctgctgctgtctgcggtctg 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 796 tgtttccttggggaggttttaggggtgacggaagctgctgctgctgctgtctgcggtctg 737

                                                                       
Query: 186 tggtggcagctgcggcaactctgggtttatgttcttcatcatttggccccagctcaaatt 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 tggtggcagctgcggcaactctgggtttatgttcttcatcatttggccccagctcaaatt 677

                                                                       
Query: 246 ttgtttctaacagccgactctctgatcccgaccaaccactttcctctgggccctgctgcc 305
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 ttgtttctaacagccgactctctgatcccgaccaaccactttcctctgggccctgctgcc 617

                                                                       
Query: 306 tctcctcgggaagtctgtccaggtgatcctttaatggctcttagaagaggagcaggtgtg 365
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 tctcctcgggaagtctgtccaggtgatcctttaatggctcttagaagaggagcaggtgtg 557

                                                                       
Query: 366 gctgctggggctgtctttctcggaaactgaactgctatttggaaaaggcaaaagcagctg 425
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 gctgctggggctgtctttctcggaaactgaactgctatttggaaaaggcaaaagcagctg 497

                                                                       
Query: 426 gctcccaccggggatgaggaaccggacccacagaagagacgtgattgacgcaatcgttag 485
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 gctcccaccggggatgaggaaccggacccacagaagagacgtgattgacgcaatcgttag 437

                                                                       
Query: 486 gatccgctctcagtgtaaaagaaacaaatggttaaagggaaagtaaacctccaacagacc 545
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 gatccgctctcagtgtaaaagaaacaaatggttaaagggaaagtaaacctccaacagacc 377

                                                                       
Query: 546 ccatacctacagcaagggaattgctgctgcgtgcgtcccagttcttcctcaagaagacca 605
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 ccatacctacagcaagggaattgctgctgcgtgcgtcccagttcttcctcaagaagacca 317

                                                                       
Query: 606 aaacgacctctgtgtctaggcttttcccagtgtagatcaggcacataagcctactcactc 665
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 aaacgacctctgtgtctaggcttttcccagtgtagatcaggcacataagcctactcactc 257

                                                              
Query: 666 tggagttcttagtttagcacctctgacctttccagcatgcatcctctgtgc 716
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 tggagttcttagtttagcacctctgacctttccagcatgcatcctctgtgc 206


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 716
Length of database: 1116
Length adjustment: 10
Effective length of query: 706
Effective length of database: 1106
Effective search space:   780836
Effective search space used:   780836
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)

Query= MSMg01no546_h20.g1 MSMg01no546_h20.g1 CHROMAT_FILE:
MSMg01no546_h20.g1 PHD_FILE: MSMg01no546_h20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:27:48 2005
         (675 letters)



>mm_chr8_95182323_95183397
          Length = 1075

 Score = 1299 bits (672), Expect = 0.0
 Identities = 674/675 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cacattcaaaacagagtgcaatgcagatagagtgccatgtttctgctgcgtgcctaattg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cacattcaaaacagagtgcaatgcagatagagtgccatgtttctgctgcgtgcctaattg 260

                                                                       
Query: 61  tcatgtcatctcagctccgtgagaccccaggatttacaattctccacctcatgaaagagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcatgtcatctcagctccgtgagaccccaggatttacaattctccacctcatgaaagagg 320

                                                                       
Query: 121 ttaaacggcttggcaaaatcactcagctagcaaaaggcagaagcaaaacttgaatataga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttaaacggcttggcaaaatcactcagctagcaaaaggcagaagcaaaacttgaatataga 380

                                                                       
Query: 181 ttgccttcctccacacttgaggctgtttttgccgcaggatccgaattgttctaattgaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttgccttcctccacacttgaggctgtttttgccgcaggatccgaattgttctaattgaca 440

                                                                       
Query: 241 ttgtagccccgagtttatatttttcatgcaccatggaaattcacttcaattatgtaaatt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttgtagccccgagtttatatttttcatgcaccatggaaattcacttcaattatgtaaatt 500

                                                                       
Query: 301 ggaatatttatttaagacacaggaaaatacaatatagccaagagcatacatgcgcatgag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggaatatttatttaagacacaggaaaatacaatatagccaagagcatacatgcgcatgag 560

                                                                       
Query: 361 cacacatactaacaacgtagacacagaaaccaaagggtccgcttttagttctgtcctact 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cacacatactaacaacgtagacacagaaaccaaagggtccgcttttagttctgtcctact 620

                                                                       
Query: 421 gtaattctcaacgtggctaagtgggcatgcactagcgttattgctataacagcatcatga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gtaattctcaacgtggctaagtgggcatgcactagcgttattgctataacagcatcatga 680

                                                                       
Query: 481 ggtcataatttaatgactgatttacccagtacaaaatgaagacaacatctctagcatagt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ggtcataatttaatgactgatttacccagtacaaaatgaagacaacatctctagcatagt 740

                                                                       
Query: 541 agacttggctggggaacagaagggctcctgtaattcaattttctggttagtaaaaagtgg 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 agacttggctggggaacagaagggctcctgtaattcaattttctggttagtaaaaagtgg 800

                                                                       
Query: 601 ctacgtggaatattagagagtagggaggaacaataaattangtgtatgaagaggaatatg 660
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 801 ctacgtggaatattagagagtagggaggaacaataaattaggtgtatgaagaggaatatg 860

                          
Query: 661 gacaggttgcaaaaa 675
           |||||||||||||||
Sbjct: 861 gacaggttgcaaaaa 875


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 675
Length of database: 1075
Length adjustment: 10
Effective length of query: 665
Effective length of database: 1065
Effective search space:   708225
Effective search space used:   708225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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