XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAT
CAGAGATCTGAGAGGGAAAGTTCATTTATATTCTCCCCAGAGAGCTTTAT
CTCTTCAGATGTGACCTTGTATAATTAAATATATTTGAAATATCAAGAGA
AATGGCAGCAAAGCAGACAATGGAATTCTTCATATTATGTCAGACTGAAA
TAAAATGAAATTAAATTATGCGAAACAGTCAAGTATAATGGAAGATAAAA
GGTTCACTGAAATTCCTTCCATATGATCATACTCATTAGCATTAGCATTT
CACAGAAGGACGTTCTTTCTATGAGCTATGTGAAGTTTTTTAAAATTAGA
AATTTATTTCACTAATTCCACATGCCAAAAAGATTTAGATGAAATGACAC
ACACACACACACAAAAATAGTTTACTAGATCATGTATGCAGAAGTTTAGA
TCAAACCCAGAGGATACATAAATAAATTTATTAAATAAACTTAATTAATT
AGTTAGTTAGTTAATTAATTAATTATGTACACTTCTCAGGAAAGTAGATG
TTTCAAATTTCTGTCACGATTAAATTTTTGATGTTATCCATCAATAAAGA
CTATTAAACCATTTTAAAAGTCATGCCTTCAAGATATGTCAGATAAATTA
CATAAGATTAATTTTCACAACAAAATAATTATTAAAAGGCACACATATAA
TTTGCCAGGATATTGAATCTTACCATTTTTGATN

TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAGAAGCA
CCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAA
CAACCCTGAGATTCCACCTCACAGCAGTCAGAATGGCTAAGATCAAAAAT
TCAGGTGACAGTAGATGCTGGCGTGGATGTGGAGAAAGAGGAACACTCCT
CCATTGTTGGTGGGAGTGCAGGCTTGTACAACCACTCTGGAAATCAGTCT
GGCGGTTCCTCAGAAAACTGGATATAGTACTACCGGAGGATCCAGCAATA
CCTCTCCTGGGCATATATCCAGAAGATGCCCCAAGTGGTAAGAAGGACAC
ATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGA
AGGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTAC
ATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAA
ATTCCTCACCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAA
CACATTCACAAAGGAACTCACACAATATGTACTCACTGATAAGCGGATAT
TAGCCCTAAACCTAGGATATGCCAGATATAAGATACCATTTCCTAAACAC
CTGACACTCAAGAAAAATGAAGACTGAAGGGTGTACACTAT

Query= MSMg01no546_o03.b1 MSMg01no546_o03.b1 CHROMAT_FILE:
MSMg01no546_o03.b1 PHD_FILE: MSMg01no546_o03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:28:20 2005
         (592 letters)



>mm_chr8_60743898_60744885
          Length = 988

 Score = 1118 bits (578), Expect = 0.0
 Identities = 584/588 (99%), Gaps = 4/588 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcatcagagatctgagagggaaagttcatttatattctccccagagagctttatct 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gaattcatcagagatctgagagggaaagttcatttatattctccccagagagctttatct 566

                                                                       
Query: 65  cttcagatgtgaccttgtataattaaatatatttgaaatatcaagagaaatggcagcaaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 cttcagatgtgaccttgtataattaaatatatttgaaatatcaagagaaatggcagcaaa 506

                                                                       
Query: 125 gcagacaatggaattcttcatattatgtcagactgaaataaaatgaaattaaattatgcg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gcagacaatggaattcttcatattatgtcagactgaaataaaatgaaattaaattatgcg 446

                                                                       
Query: 185 aaacagtcaagtataatggaagataaaaggttcactgaaattccttccatatgatcatac 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aaacagtcaagtataatggaagataaaaggttcactgaaattccttccatatgatcatac 386

                                                                       
Query: 245 tcattagcattagcatttcacagaaggacgttctttctatgagctatgtgaagtttttta 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tcattagcattagcatttcacagaaggacgttctttctatgagctatgtgaagtttttta 326

                                                                       
Query: 305 aaattagaaatttatttcactaattccacatgccaaaaagatttagatgaaatgacacac 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||    ||
Sbjct: 325 aaattagaaatttatttcactaattccacatgccaaaaagatttagatgaaatg----ac 270

                                                                       
Query: 365 acacacacacaaaaatagtttactagatcatgtatgcagaagtttagatcaaacccagag 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 acacacacacaaaaatagtttactagatcatgtatgcagaagtttagatcaaacccagag 210

                                                                       
Query: 425 gatacataaataaatttattaaataaacttaattaattagttagttagttaattaattaa 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209 gatacataaataaatttattaaataaacttaattaattagttagttagttaattaattaa 150

                                                                       
Query: 485 ttatgtacacttctcaggaaagtagatgtttcaaatttctgtcacgattaaatttttgat 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 149 ttatgtacacttctcaggaaagtagatgtttcaaatttctgtcacgattaaatttttgat 90

                                                           
Query: 545 gttatccatcaataaagactattaaaccattttaaaagtcatgccttc 592
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89  gttatccatcaataaagactattaaaccattttaaaagtcatgccttc 42


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 592
Length of database: 988
Length adjustment: 10
Effective length of query: 582
Effective length of database: 978
Effective search space:   569196
Effective search space used:   569196
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)