Query= MSMg01no547_a16.b1 MSMg01no547_a16.b1 CHROMAT_FILE:
MSMg01no547_a16.b1 PHD_FILE: MSMg01no547_a16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:28:33 2005
(673 letters)
>mm_chr8_70071685_70072757
Length = 1073
Score = 1270 bits (657), Expect = 0.0
Identities = 666/669 (99%)
Strand = Plus / Plus
Query: 5 gaattcattgattctaattttcttgagaagaacacacatcgaaaaatatattcttttact 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcattgattctaattttcttgagaagaacacacatcgaaaaatatattcttttact 264
Query: 65 cttgaaccacgaacgattgaagatttccggagtataagtacatactaccaggtatctcga 124
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 265 cttgaaccacgaacgattgaagatttctggagtataagtacatactaccaggtatctcga 324
Query: 125 acatctgtgatgacaaacacatcactttgttccctacataccaaagacggagtccaaggc 184
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 325 acatctgtgatgacaaacacatcactttgttccctacataccaaagacggagtccatggc 384
Query: 185 ttaatgggcaccattcttgcctataagaagttcaattataaggacaatatagatctggta 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ttaatgggcaccattcttgcctataagaagttcaattataaggacaatatagatctggta 444
Query: 245 gagtttaagactctgaaggaagaagaaatagaagaagtcctgaagagtgtttttggaatt 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gagtttaagactctgaaggaagaagaaatagaagaagtcctgaagagtgtttttggaatt 504
Query: 305 cacttggagacaaagcttgtgcccaaatgtggcaatgtcttttttactatttagagtaat 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 cacttggagacaaagcttgtgcccaaatgtggcaatgtcttttttactatttagagtaat 564
Query: 365 aaggggaaatgatctttaatgtttctatatgcacttattctttcatgaaaaacaatcaaa 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 aaggggaaatgatctttaatgtttctatatgcacttattctttcatgaaaaacaatcaaa 624
Query: 425 ttatgcaaaattaggtgacagactgagaagccttgagatatcatcacaaagttcatcaat 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ttatgcaaaattaggtgacagactgagaagccttgagatatcatcacaaagttcatcaat 684
Query: 485 gattgactggtatatcaacatctgtcccctacattatggtaagaaaatcatagacatcaa 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 gattgactggtatatcaacatctgtcccctacattatggtaagaaaatcatagacatcaa 744
Query: 545 atatctctttctgcaaaattaaccatttatgtaactaaatgacttttgaagaaatgtgcc 604
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 atagctctttctgcaaaattaaccatttatgtaactaaatgacttttgaagaaatgtgcc 804
Query: 605 attaaaaatgtaatcgcaataaaagtgctttaatgatgatatagttgtcttgatttatac 664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 attaaaaatgtaatcgcaataaaagtgctttaatgatgatatagttgtcttgatttatac 864
Query: 665 tataaaacc 673
|||||||||
Sbjct: 865 tataaaacc 873
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 673
Length of database: 1073
Length adjustment: 10
Effective length of query: 663
Effective length of database: 1063
Effective search space: 704769
Effective search space used: 704769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no547_a16.g1 MSMg01no547_a16.g1 CHROMAT_FILE:
MSMg01no547_a16.g1 PHD_FILE: MSMg01no547_a16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:28:33 2005
(594 letters)
>mm_chr8_70229196_70230188
Length = 993
Score = 1133 bits (586), Expect = 0.0
Identities = 592/594 (99%), Gaps = 1/594 (0%)
Strand = Plus / Minus
Query: 1 ctggaaatttaactttttttttcccttttagttgaaagctatcttaaattatgtacaaag 60
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 793 ctggaaatttaac-ttttttttcccttttagttgaaagctatcttaaattatgtacaaag 735
Query: 61 atagagaccaaaaatcagcaatatctagatgttcatctcaggtaataatagaatcaagaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 734 atagagaccaaaaatcagcaatatctagatgttcatctcaggtaataatagaatcaagaa 675
Query: 121 tctttgttatttgtaattccatattgtattacacaatgcaaaaggactaagaagtcttga 180
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 674 tctttgttatttgtaattccatattgtattacacaatgcaaaaagactaagaagtcttga 615
Query: 181 agtttaatctctcactgattacagttgccagcaaagggaagaaaggcctagaaacacatt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 agtttaatctctcactgattacagttgccagcaaagggaagaaaggcctagaaacacatt 555
Query: 241 ctttgagcttcatttaaggagaagttagtgccttgccttgagaagacagactaagcattc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 ctttgagcttcatttaaggagaagttagtgccttgccttgagaagacagactaagcattc 495
Query: 301 agttatttccttgaactgactcaaaccctaagtcttttcttaatcagctgtgcatatgtt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 agttatttccttgaactgactcaaaccctaagtcttttcttaatcagctgtgcatatgtt 435
Query: 361 cctaaagcgtcttctttaatgactgtcgctttccttttgcttaacatggcatccaaagga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 cctaaagcgtcttctttaatgactgtcgctttccttttgcttaacatggcatccaaagga 375
Query: 421 aaaggagatgagagtgaaaaaagggaggggtatgattagcagagactgggagtcatctgc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 aaaggagatgagagtgaaaaaagggaggggtatgattagcagagactgggagtcatctgc 315
Query: 481 ctatagttctggaggatctggagaaagatgtggtgtgagccagagtcaagaccagcctat 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 ctatagttctggaggatctggagaaagatgtggtgtgagccagagtcaagaccagcctat 255
Query: 541 ggcactgtagcaagacgctttctcaaaaagcaaagctctgtactaatcaaaact 594
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 ggcactgtagcaagacgctttctcaaaaagcaaagctctgtactaatcaaaact 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 594
Length of database: 993
Length adjustment: 10
Effective length of query: 584
Effective length of database: 983
Effective search space: 574072
Effective search space used: 574072
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
