Query= MSMg01no547_d18.b1 MSMg01no547_d18.b1 CHROMAT_FILE:
MSMg01no547_d18.b1 PHD_FILE: MSMg01no547_d18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:28:48 2005
(643 letters)
>mm_chr8_96798512_96799554
Length = 1043
Score = 1147 bits (593), Expect = 0.0
Identities = 626/637 (98%)
Strand = Plus / Plus
Query: 7 gaattctctatgtatatcaggctggcctcaaactgacaagagatccacctgcctctgcat 66
|||||||||||||| ||||||||||||||||| ||||||||||||| |||||||||||||
Sbjct: 207 gaattctctatgtagatcaggctggcctcaaattgacaagagatccgcctgcctctgcat 266
Query: 67 cccaagtgctaggattaaaggcatgcgccaccacgccttttcttgcttattttgtcttta 126
||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct: 267 cccaagtgctaggattaaaggcatgtgccaccactccttttcttgcttattttgtcttta 326
Query: 127 tgccttttattcatgccttggcagttcattcatttgtagtgttcattcctaatatcactg 186
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 327 tgccttttattcatgccttggcagttcattcaattgtagtgttcattcctaatatcactg 386
Query: 187 ttgacttcacattaatattttgatttgggggctggctagatgactcatcgagtaaaagca 246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 ttgacttcacattaatattttgatttgggggctggctagatgactcatcgagtaaaagca 446
Query: 247 tttgctgccaaatctaagaacttgagctcaaactctggaagccatgtgatggaaggagag 306
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 tttgctgccaaatctaagaacttgagctcaaactctggaagccatgtgatggaaggagag 506
Query: 307 aaccaactcactggttgtctctgacctctgacctctacatgtgtcatgacccctggccca 366
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 aaccaactcactggttgtctctgacctctgacctctacatgtgtcatgacccctggccca 566
Query: 367 aataagaaaatgtaaaattttaaatgtaagtattttgaatgttggttattacagatttcc 426
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 567 aataagaaaatgtaaaattttaaatgtaagtattttgaatgttggttattacagagttcc 626
Query: 427 tgttgatttgtatctgtcatacatattaaatgggaggtagcacagaggttctgtgctgtc 486
|||||||||||||||||||| |||||||||||||||| ||||| ||||||||||||||||
Sbjct: 627 tgttgatttgtatctgtcatgcatattaaatgggaggcagcaccgaggttctgtgctgtc 686
Query: 487 cactgtggattttgcatcttgtcagatacccacgggctgtagtgctgtctccatttgaca 546
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 cactgtggattttgcatcttgtcagatacccacgggctgtagtgctgtctccatttgaca 746
Query: 547 gcatggttggctggttggtctgttgaaggaaagagagaataaggagtattttgtgtcatg 606
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 747 gcatggttggctggttggtctgttgaaggaaagagagaataaggagtgttttgtgtcatg 806
Query: 607 agggccatatcaaatatggcttttcctttgtgcagca 643
|||||||||||||||||||||||||||||||||||||
Sbjct: 807 agggccatatcaaatatggcttttcctttgtgcagca 843
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 643
Length of database: 1043
Length adjustment: 10
Effective length of query: 633
Effective length of database: 1033
Effective search space: 653889
Effective search space used: 653889
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no547_d18.g1 MSMg01no547_d18.g1 CHROMAT_FILE:
MSMg01no547_d18.g1 PHD_FILE: MSMg01no547_d18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:28:48 2005
(678 letters)
>mm_chr8_96941578_96942656
Length = 1079
Score = 1216 bits (629), Expect = 0.0
Identities = 669/683 (97%), Gaps = 7/683 (1%)
Strand = Plus / Minus
Query: 1 atggtgttaaaagaaaggggttagtgtgtcgagaacacacaatttattgactcaaggaca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 797 atggtgttaaaagaaaggggttagtgtgtcgagaacacacaatttattgactcaaggaca 738
Query: 61 aatgtaaactgagaccctg-aaaaaaaaatctcctgttgttccatgcttccagagccgtc 119
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 aatgtaaactgagaccctgaaaaaaaaaatctcctgttgttccatgcttccagagccgtc 678
Query: 120 tctagtcaggaaagggatacgcccacaatctcgctaagactactcccaccaggactcagt 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 tctagtcaggaaagggatacgcccacaatctcgctaagactactcccaccaggactcagt 618
Query: 180 ttaatgtcccctcgatctagccagactacaccagtgccagccatgtagctggctccaccc 239
|||| |||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct: 617 ttaacgtcccctcgatctagccagactacaccagtaccagctatgtagctggctccaccc 558
Query: 240 -aacagccttctgtgtgtcaacttcctcctttgccctctgagcctactgacacagttc-c 297
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct: 557 aaacagccttctgtgtgtcaacttcctcctttgccctctgagcctactgacacag-tctc 499
Query: 298 agcctaccctcagctccatctgcaagtctcactccaaatacccacactgggatatctctc 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 agcctaccctcagctccatctgcaagtctcactccaaatacccacactgggatatctctc 439
Query: 358 gccaccaagatgttaacctgcggtccctgaggatctaacgagtacagcttgctggaagtg 417
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 gccaccaagacgttaacctgcggtccctgaggatctaacgagtacagcttgctggaagtg 379
Query: 418 ttctcacccaacatcctgagtgataccagttcctgaaggccactaatgtgcacagccaag 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 ttctcacccaacatcctgagtgataccagttcctgaaggccactaatgtgcacagccaag 319
Query: 478 tccataaacaggagggaacctccggggaacagagagagagaaagagactggggaagtcag 537
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 318 tccataaacaggagggaacctcc-gggaacagagagagagaaagagactggggaagtcag 260
Query: 538 gggaggaggatgaagtgtaacatctggggagacaatagcttgataggtgccaactgtggt 597
|||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct: 259 gggaggaggatgaagtgtgacatctggggagacaatggcttgataggtgccaactgtggt 200
Query: 598 ctttgcttggccaaactttggtcaagttcctaagaaccattacctacactatcaggcaac 657
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 199 ctttgcttggccaaactttggtcaagttcctaagaaccattgcctacactatcaggcaac 140
Query: 658 cct--cctatctgaccagggcga 678
||| ||||||||||||||||||
Sbjct: 139 cctcccctatctgaccagggcga 117
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 678
Length of database: 1079
Length adjustment: 10
Effective length of query: 668
Effective length of database: 1069
Effective search space: 714092
Effective search space used: 714092
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
