Query= MSMg01no547_f08.b1 MSMg01no547_f08.b1 CHROMAT_FILE:
MSMg01no547_f08.b1 PHD_FILE: MSMg01no547_f08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:28:56 2005
(650 letters)
>mm_chr8_61493756_61494806
Length = 1051
Score = 1118 bits (578), Expect = 0.0
Identities = 625/650 (96%), Gaps = 20/650 (3%)
Strand = Plus / Plus
Query: 5 gaattccataaaaatatcgtaaacagtgaatgtataaa-gccaacataaatgaatagcct 63
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 205 gaattccataaaaatatcgtaaacagtgaatgtataaaagccaacataaatgaatagcct 264
Query: 64 tataggcagcatagaagttcatggagatttttagatattgactgttgttaattttgatat 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tataggcagcatagaagttcatggagatttttagatattgactgttgttaattttgatat 324
Query: 124 gtaatatatttttaaataaaattaagaaattaacaaagtaaataataaattaaaattata 183
||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||
Sbjct: 325 gtaatatatttttaaataaaattaagaaattaaaaaagtaaataataaattaaaatcata 384
Query: 184 atagagtctattgtattgatgttgaccttttttacttcccagaaattgaaagttgaaaga 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 atagagtctattgtattgatgttgaccttttttacttcccagaaattgaaagttgaaaga 444
Query: 244 gagagagagagagagagagagagaaagagagagaaagagagaaacttatatgtgggatat 303
|||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 445 gagagagagagagagagagagaga--------------gagaaacttatatgtgggatat 490
Query: 304 cacccttttcaaagagaac-tcccgaaacaaagaatacattttattgtcatggttctgag 362
|||||||| |||||||||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct: 491 caccctttgcaaagagaacctcc-gaaacaaagaatacattttattgtcatggttctgag 549
Query: 363 ctgatttccctacctatgtgtaagatattgttgttgaaagcaccaccacacattttagtt 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 ctgatttccctacctatgtgtaagatattgttgttgaaagcaccaccacacattttagtt 609
Query: 423 caaggtgtttaaagagttagagaaaccaagctcggggg--aggggggactaggaagactc 480
|||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||
Sbjct: 610 caaggtgtttaaagagttagagaaaccaagctcgggggggagggggg-ctaggaagactc 668
Query: 481 ccttttagtgcctcattcttatagtactggacagtgttttgaaggctgattgggggcaaa 540
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 669 ccttttagtgcctcattcttatagtactggacagtgttgtgaaggctgattgggggcaaa 728
Query: 541 tttattaatagcactatattgctataaatcctgtgaacaacaatagggaccagtctggca 600
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 729 tttattaatagcactatattcctataaatcctgtgaacaacaatagggaccagtctggca 788
Query: 601 aaatatttccaatggtgaaactcaatagcactaatattattgggaaaatt 650
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 789 aaatatttccaatggtgaaactcaatagcactaatattattgggaaaatt 838
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 50
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 650
Length of database: 1051
Length adjustment: 10
Effective length of query: 640
Effective length of database: 1041
Effective search space: 666240
Effective search space used: 666240
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no547_f08.g1 MSMg01no547_f08.g1 CHROMAT_FILE:
MSMg01no547_f08.g1 PHD_FILE: MSMg01no547_f08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:28:56 2005
(659 letters)
>mm_chr8_61691245_61692303
Length = 1059
Score = 1243 bits (643), Expect = 0.0
Identities = 655/659 (99%)
Strand = Plus / Minus
Query: 1 aattgaaaaattaaatatactatgaatttttgtaagcctaagccagatggctaattagaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 771 aattgaaaaattaaatatactatgaatttttgtaagcctaagccagatggctaattagaa 712
Query: 61 ataatgatgaattatgtagctcataattatcaaactgctgaaacctgaggtgtaggaaac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 711 ataatgatgaattatgtagctcataattatcaaactgctgaaacctgaggtgtaggaaac 652
Query: 121 acacacacaaagaaaaacaaaacaaaacctcagaaatcttagattaagtccacattgact 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 651 acacacacaaagaaaaacaaaacaaaacctcagaaatcttagattaagtccacattgact 592
Query: 181 ttgaaaactttctgaaataagtcagtattgattctgtgctgagttttgaaatgactttcc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 591 ttgaaaactttctgaaataagtcagtattgattctgtgctgagttttgaaatgactttcc 532
Query: 241 tacatttgatccatcaggtcattataagaaagcactgttagccacatgatcatctcattt 300
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 531 tacatttgatccatcaggtcattataagaaagcactgttagccacgtgatcatctcattt 472
Query: 301 gcaggctacagttaaactgtggtcacctcaagattctttcctattttctatttttactta 360
|||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 471 gcaggctacagttacactgtggtcacctcaagattctttcctattttctatgtttactta 412
Query: 361 ggacttcagccaaggggaacaggcagaggacacatgcctcttgtttttccaacatcaaaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 ggacttcagccaaggggaacaggcagaggacacatgcctcttgtttttccaacatcaaaa 352
Query: 421 ttcatgttgagaatggtctctgaaataattctcttataaacgtcactgtagctacagaaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 ttcatgttgagaatggtctctgaaataattctcttataaacgtcactgtagctacagaaa 292
Query: 481 agaataaaaaaacatagattgacgataaatttctttacacattgcttttctcattattac 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 agaataaaaaaacatagattgacgataaatttctttacacattgcttttctcattattac 232
Query: 541 taatattgctcacagtagaatctcaaaggacattttaaaaaatttaaatatatagtttgc 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 231 taatattgctcacagtagaatctcaaaggacattttaaaaaatttaaatatatagtttgc 172
Query: 601 attcttcacatgtaaatagttgattgtgagtcaatgaaccttgagaaggaaaacagacg 659
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 171 attcttcacatgtaaatagttgattgtgagtcaatgaactttgagaaggaaaacagacg 113
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 659
Length of database: 1059
Length adjustment: 10
Effective length of query: 649
Effective length of database: 1049
Effective search space: 680801
Effective search space used: 680801
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
