BAC Information

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BAC

Clone NameMSMg01-547G04
Chromosome8 (Build37)
Map Location 113,892,502 - 113,892,905
singlet/doubletsinglet
Overlap geneFa2h
Upstream geneHydin, LOC672398, Vac14, BC060632, 2010004A03Rik, Sf3b3, Cog4, Fuk, St3gal2, Ddx19a, Ddx19b, Aars, Exosc6, Mrcl, 4930402E16Rik, 9430091E24Rik, Glg1, Rfwd3, LOC547023, Mlkl
Downstream geneWdr59, Znrf1, Ldhd, Zfp1, Ctrb1, Bcar1, Cfdp1, Tmem170, Chst5, 4932417I16Rik, Gabarapl2, Adat1, Kars, Terf2ip, EG627828, LOC672498, LOC100042040
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-547G04.T7 (MSMg01no547_g04.b1)MSMg01-547G04.TJ (MSMg01no547_g04.g1)
ACCAG611987AG611988
length768775
length of high quality
(start - end)
404 (55 - 458)211 (110 - 320)
definitionCHROMAT_FILE: MSMg01no547_g04.b1 PHD_FILE: MSMg01no547_g04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:29:00 2005CHROMAT_FILE: MSMg01no547_g04.g1 PHD_FILE: MSMg01no547_g04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:29:00 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CGCTATACGACTCCTATATGTACAGGATCCGCGGGAATCACTAAAAGTTT
TTCGACCTGGCACAACTGTGAGGTTTTTTTTTTCTCTCTCTCTCTTAATT
AAATCATTTGCCCTCCTGGTCTCCCACGGCTCCCTTGGTAGGTCACAGCA
GTGTGTGCAGTGGTGGCCACTCCATGACAGGTTTGTCATGGCACCTGATA
CTGCCATGGTGCCCAAGAGGAAGGTTATCTGGGTTGAAGGAGCCAAGGTG
GAGCCCAGGAGCCACTCCCTGGCACTGTTGGGGATAGCGGGAGACAATAA
ATCACCAGAGTAAAACTGTAAACGGAAGGGAAGAGTGAAAAACTCATCTG
AAGGAGGAAGACCCACTTCTAATCCCAATCTCTGTAGGAAGATACACCTG
GGATCCAGAGCTTTTAAAGTGGAAGATAAACCTTTATAACCTGGGCCACA
CCTTCTGCAGACAGTCTATATAAAGTCATGGAAGAAGGAAACTTTCTCTC
TCTCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCACTCACAC
TATATCATTCTTTCTTCATAACAGTTTAATCTTTTCTGTCTCTTTAACTC
TTTTTCTTTTTGTCTCCCTTTTTATTCCTTCTATAATCTTTTTCTTTTCC
TACTAATTATATATTTCTTTTCTTATTTTTTCATTTTTTCTTCAATTCTG
CTACCAATCGATATTATCTTTCTTTGTACCTCTTTTCCGCTTGCGATGTA
TCTTCTTCAACCCTTTTG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXCAGATAGAACAGGACAGCAATAGGGCAAGACCTGAGAAAGAG
TGGATAGCGGAAGTTCTGAAACAGAATCTGGAGACAGCTCAAGGTAGTGT
TTGCCTTCAGTGTATGAAACCAATTCAGTCACCATCATGAACAAACTGGG
CAGGTAATTCTAGCACTGATGGGTGGAGGCATGAGATGTTCAAGCTTATC
CTCGGCTACACAGTGAGTTTGTCAGCTTGGACTATAACAAAGCAAAACAA
AACCCAACCTGAATCAAAATCAGAGAGGAGGGGCTGTCTCCTACCTCCAA
AACAAAACATCAACAAAAAACACTACTCAACCATTTTTACTCCGAGGTAT
ATATGTAAAACTATGGTATATGGCCCTTTTGCTAGAGCCTTAAACATCCC
CATTCGCTATTAGAGGCGGTGGTGGTGTATAAATGGTCTCAAAGAGCATT
TGCTCTTTTCACTGCTTTATTATCTCATATCTTGTAAGTCATTCCGTGCG
TCCGAAGACTGATGCTTGTATTATCAAATGGGTATAATCTATTGTCATAT
GGTATACTCCATAACCCTTTATTGGGTACTTGTTCTACCCCTTAAATAGA
AGATAATCCTGAACTGGTAATAGCAATCCTCTGTGATGAAACTTACCTGT
TATTCTATTATGCATCCATGTATAAAATTCTTAAATAACTATCATTCTTT
ATTATAATTGAAAAATATGTGTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no547_g04.b1 MSMg01no547_g04.b1 CHROMAT_FILE:
MSMg01no547_g04.b1 PHD_FILE: MSMg01no547_g04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:29:00 2005
         (404 letters)



>mm_chr8_113892302_113893105
          Length = 804

 Score =  766 bits (396), Expect = 0.0
 Identities = 402/404 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   acctggcacaactgtgaggttttttttttctctctctctcttaattaaatcatttgccct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acctggcacaactgtgaggttttttttttctctctctctcttaattaaatcatttgccct 260

                                                                       
Query: 61  cctggtctcccacggctcccttggtaggtcacagcagtgtgtgcagtggtggccactcca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cctggtctcccacggctcccttggtaggtcacagcagtgtgtgcagtggtggccactcca 320

                                                                       
Query: 121 tgacaggtttgtcatggcacctgatactgccatggtgcccaagaggaaggttatctgggt 180
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgacaggtttgtcatggcacctggtactgccatggtgcccaagaggaaggttatctgggt 380

                                                                       
Query: 181 tgaaggagccaaggtggagcccaggagccactccctggcactgttggggatagcgggaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgaaggagccaaggtggagcccaggagccactccctggcactgttggggatagcgggaga 440

                                                                       
Query: 241 caataaatcaccagagtaaaactgtaaacggaagggaagagtgaaaaactcatctgaagg 300
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 441 caataaatcaccagagtaaaactgtaaacagaagggaagagtgaaaaactcatctgaagg 500

                                                                       
Query: 301 aggaagacccacttctaatcccaatctctgtaggaagatacacctgggatccagagcttt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aggaagacccacttctaatcccaatctctgtaggaagatacacctgggatccagagcttt 560

                                                       
Query: 361 taaagtggaagataaacctttataacctgggccacaccttctgc 404
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 taaagtggaagataaacctttataacctgggccacaccttctgc 604


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 404
Length of database: 804
Length adjustment: 9
Effective length of query: 395
Effective length of database: 795
Effective search space:   314025
Effective search space used:   314025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)