Query= MSMg01no547_l17.b1 MSMg01no547_l17.b1 CHROMAT_FILE:
MSMg01no547_l17.b1 PHD_FILE: MSMg01no547_l17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:29:26 2005
(701 letters)
>mm_chr8_107776565_107777665
Length = 1101
Score = 1319 bits (682), Expect = 0.0
Identities = 694/698 (99%)
Strand = Plus / Minus
Query: 4 ggaattcttagttatctctcacggtatcaaacttctcttactcagctgcaggacagaaca 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 901 ggaattcttagttatctctcacggtatcaaacttctcttactcagctgcaggacagaaca 842
Query: 64 tgaaagaacccaaaggggttttccatgtgggtttatggtgtacatggcttttctccagat 123
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 841 tgaaagaacccaaaggggttttccatgtgggtttatggtgtacatgacttttctccagat 782
Query: 124 cactcactgagagagctagggctgggatgaaacaaacacaagtggatatacccatagcca 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 cactcactgagagagctagggctgggatgaaacaaacacaagtggatatacccatagcca 722
Query: 184 ggcctcagccctcgtggacctggcaggcattttcgtatagttactagcttccttccttct 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ggcctcagccctcgtggacctggcaggcattttcgtatagttactagcttccttccttct 662
Query: 244 ctcattggattcccagtggccatatcttatctgttccctttgaggtctggtgttagagct 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 ctcattggattcccagtggccatatcttatctgttccctttgaggtctggtgttagagct 602
Query: 304 aactaagcccttcaggtcgaggtttgcctgtagcatgtggggcggggccatcatgtgtca 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 aactaagcccttcaggtcgaggtttgcctgtagcatgtggggcggggccatcatgtgtca 542
Query: 364 ccgtcttgcccactatacacacacacacaaaactatgccagtgtacttctgaagggtgac 423
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 541 ccgtcttgcccactatacacacacacacaaaaccatgccagtgtacttctgaagggtgac 482
Query: 424 ccatccccctcccggaaggagtcctaagattcctccactataagattgctcatattcttc 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 ccatccccctcccggaaggagtcctaagattcctccactataagattgctcatattcttc 422
Query: 484 aactctagcttcaaggaaatcaacagctcacattttagtacaaacagcccagtggcagca 543
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 aactccagcttcaaggaaatcaacagctcacattttagtacaaacagcccagtggcagca 362
Query: 544 catggcacgctgtcactgtgggcataggtgctttattggaagggggacgaggaagtctcc 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 catggcacgctgtcactgtgggcataggtgctttattggaagggggacgaggaagtctcc 302
Query: 604 tctgttcacgaggatgggaagagtcctggctaccctgacagtgggatgtgcagggtctct 663
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tctgatcacgaggatgggaagagtcctggctaccctgacagtgggatgtgcagggtctct 242
Query: 664 ggccagacgaaggtccaaatgggaagacacctgtcaaa 701
||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ggccagacgaaggtccaaatgggaagacacctgtcaaa 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 701
Length of database: 1101
Length adjustment: 10
Effective length of query: 691
Effective length of database: 1091
Effective search space: 753881
Effective search space used: 753881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no547_l17.g1 MSMg01no547_l17.g1 CHROMAT_FILE:
MSMg01no547_l17.g1 PHD_FILE: MSMg01no547_l17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:29:26 2005
(663 letters)
>mm_chr8_107637176_107638237
Length = 1062
Score = 1197 bits (619), Expect = 0.0
Identities = 652/663 (98%), Gaps = 1/663 (0%)
Strand = Plus / Plus
Query: 1 tttgttcagctctgagccccatttttaatggggttatttgattttctggagcccaccttc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttgttcagctctgagccccatttttaatggggttatttgattttctggagcccaccttc 260
Query: 61 ttgagttctttatgtatattggatattagtcccctatctgatttaggataggtaaagatc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttgagttctttatgtatattggatattagtcccctatctgatttaggataggtaaagatc 320
Query: 121 ctttcccaatctgttggtgctctttttgtcttgttgacggtgtcttttgccttgcagaag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctttcccaatctgttggtgctctttttgtcttgttgacggtgtcttttgccttgcagaag 380
Query: 181 ctttgcaactttatgaggtcccatttatcgattctcgatcttatggcacaagccattgct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctttgcaactttatgaggtcccatttatcgattctcgatcttatggcacaagccattgct 440
Query: 241 gttctattgaggaacttttctcctgtacccatatcttcgaggcttttagaggagaaagta 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gttctattgaggaacttttctcctgtacccatatcttcgaggcttttagaggagaaagta 500
Query: 301 gggaaaaacatactgtcttttaagtttacatataatatgttctcttctctgctaccgttg 360
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gggaaaagcatactgtcttttaagtttacatataatatgttctcttctctgctaccgttg 560
Query: 361 acctctgggaactcctacggctccttaagtttgctgctgagcattgtaaatacagcaggc 420
||||||||||||||||| |||||||||||||||||||||| |||||||||||||| ||||
Sbjct: 561 acctctgggaactcctatggctccttaagtttgctgctgaccattgtaaatacagaaggc 620
Query: 421 aggtttttactgcaagttcttgctggacctcaggcaaaggagtgatcagtgaaggccagt 480
||||| ||||||| ||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 621 aggttcatactgcaggttcttgctggacctcaggcacaggagtgatcagtgaaggccagt 680
Query: 481 gtcaccttgggctctgtgaggctagggtgctcgctgtctgctggtcactgctccccattg 540
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 681 gtcaccttgggctctgtgaggctagggtgctcgctgtctgctggtcactgctcctcattg 740
Query: 541 tcacctgagtactttgccagtgcactaatctctttggagatagaattctctagtgtgtta 600
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 741 tcacctgagtactttgccagtgcactaatctctttggagataaaattctctagtgtgtta 800
Query: 601 ctaagtgttagaattttttttaagaatataaagtaccatgactgaaatattaatatttaa 660
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 801 ctaagtgttagaattttttt-aagaatataaagtaccatgactgaaatattaatatttaa 859
Query: 661 aat 663
|||
Sbjct: 860 aat 862
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 663
Length of database: 1062
Length adjustment: 10
Effective length of query: 653
Effective length of database: 1052
Effective search space: 686956
Effective search space used: 686956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
