Query= MSMg01no547_p11.b1 MSMg01no547_p11.b1 CHROMAT_FILE:
MSMg01no547_p11.b1 PHD_FILE: MSMg01no547_p11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:29:45 2005
(643 letters)
>mm_chr8_59419716_59420759
Length = 1044
Score = 1174 bits (607), Expect = 0.0
Identities = 634/647 (97%), Gaps = 9/647 (1%)
Strand = Plus / Plus
Query: 5 gaattccaatcaaaccatcataagccatcatatatagttcagaagaaatactgaagtcac 64
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccaatcaaaccagcataagccatcatatatagttcagaagaaatactgaagtcac 264
Query: 65 gtcattttatgaccagatgaagaaagataaatatttaattaaaaagtctcatttgttggc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gtcattttatgaccagatgaagaaagataaatatttaattaaaaagtctcatttgttggc 324
Query: 125 ttttcttggaggaaaa-ttgaattttttaaataaggttttagaactgttctaagcactct 183
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttttcttggaggaaaaattgaattttttaaataaggttttagaactgttctaagcactct 384
Query: 184 agaactttccttgtattgcctatactagttagtctaaatttcatttaaaacctcatgtgt 243
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 385 agaactttccttgtattgcctatactagttagtctaaatttcatttaaaacctcatgttt 444
Query: 244 caaacaatgatactgaggccatgtctaccagaaaaccaggtcagttacctgcatatgttg 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 caaacaatgatactgaggccatgtctaccagaaaaccaggtcagttacctgcatatgttg 504
Query: 304 tcttctctgcctctgttcctcaggcctaaccactcagtcttgtccctggttccctagctc 363
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 505 tcttctctgcctctgttcctcaggcctaatcactcagtcttgtccctggttccctagctc 564
Query: 364 tggaatagagcaccaactggagtttcccttcctccctatctacaacctgtttggttccca 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tggaatagagcaccaactggagtttcccttcctccctatctacaacctgtttggttccca 624
Query: 424 cagattattctaccctgacctcacaaccacaactcatcattatatcccaacctccaacac 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 cagattattctaccctgacctcacaaccacaactcatcattatatcccaacctccaacac 684
Query: 484 cagcagacaatctctgtgatcacaccagctgagcaggtcagaaaaatgagcaac------ 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 cagcagacaatctctgtgatcacaccagctgagcaggtcagaaaaatgagcaacatgcaa 744
Query: 538 -catcacactctcccaaaaatccagttaggaaacagaaaacaaagaacaaaacacccacc 596
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 ccatcacactctcccaaaa-tccagttaggaaacagaaaacaaagaacaaaacacccacc 803
Query: 597 caacaaagaaaaatcctaatgtcagcacacaggcttataattattcc 643
|||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 804 caacaaagaaaaatcctaatgtcagcacccaggcttataattattcc 850
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 643
Length of database: 1044
Length adjustment: 10
Effective length of query: 633
Effective length of database: 1034
Effective search space: 654522
Effective search space used: 654522
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no547_p11.g1 MSMg01no547_p11.g1 CHROMAT_FILE:
MSMg01no547_p11.g1 PHD_FILE: MSMg01no547_p11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:29:45 2005
(602 letters)
>mm_chr8_59564790_59565790
Length = 1001
Score = 1125 bits (582), Expect = 0.0
Identities = 597/602 (99%), Gaps = 1/602 (0%)
Strand = Plus / Minus
Query: 1 tagaaaacatggaaataaagttccatgtgaaatacagatataatggcatttctaaatctt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 tagaaaacatggaaataaagttccatgtgaaatacagatataatggcatttctaaatctt 742
Query: 61 attttactccaggagtagaaactaaagtgcaggaaagaagtttttgcatgttaataattg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 attttactccaggagtagaaactaaagtgcaggaaagaagtttttgcatgttaataattg 682
Query: 121 tgtgcctatttttatataccaataaatgtaatgttttatgaatgcttaacattttttcaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 681 tgtgcctatttttatataccaataaatgtaatgttttatgaatgcttaaca-tttttcaa 623
Query: 181 attttgtgagctttctcatgggttcccactgcaactagaaaaaaaggaatatctcaaaca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 attttgtgagctttctcatgggttcccactgcaactagaaaaaaaggaatatctcaaaca 563
Query: 241 actattttgctaaacaaaccaaaacaaagaacaatggactaattctttagggatataatg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 actattttgctaaacaaaccaaaacaaagaacaatggactaattctttagggatataatg 503
Query: 301 aatatatatgataaatccacactgaggtaaaggtcattaaacagtaaaaaatgagtaatg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 aatatatatgataaatccacactgaggtaaaggtcattaaacagtaaaaaatgagtaatg 443
Query: 361 agacaacatattttgatgacatacatatttaaacatcatgaggtttagtgtttaaggcac 420
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 agacaacatattttgatgacatacatatttaaacatcatgaggtttagtgtttaaggcag 383
Query: 421 ctttcctgaagaggatggggctgatgcttgatcttgatagtgggtgagtttggggaagaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 ctttcctgaagaggatggggctgatgcttgatcttgatagtgggtgagtttggggaagaa 323
Query: 481 actgggcaaaagagaaggttctgttgggcagaggaggggaggtccacctggtgctaagaa 540
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 322 actgggcaaaagagaaggttctgttgggcagaggagggtaggtccacctggtgctaagaa 263
Query: 541 aggaagtcaatgagtctctttagagaccaaggcaactgccaattatgcaaagagtgctta 600
| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 262 aagaagtcaatgagtctctttagagaccaaggtaactgccaattatgcaaagagtgctta 203
Query: 601 aa 602
||
Sbjct: 202 aa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 602
Length of database: 1001
Length adjustment: 10
Effective length of query: 592
Effective length of database: 991
Effective search space: 586672
Effective search space used: 586672
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
