BAC Information

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BAC

Clone NameMSMg01-548A03
Chromosome8 (Build37)
Map Location 43,769,937 - 43,770,431
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC671994, Zfp353, EG620772, LOC628212
Downstream geneTriml1, LOC622082, EG622117, LOC100039417, Zfp42, Adam26b, Adam26a, EG384813, Adam34, EG384814
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-548A03.T7 (MSMg01no548_a03.b1)MSMg01-548A03.TJ (MSMg01no548_a03.g1)
ACCAG612459AG612460
length765735
length of high quality
(start - end)
382 (47 - 428)495 (75 - 569)
definitionCHROMAT_FILE: MSMg01no548_a03.b1 PHD_FILE: MSMg01no548_a03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:29:49 2005CHROMAT_FILE: MSMg01no548_a03.g1 PHD_FILE: MSMg01no548_a03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:29:49 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
ACCTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCAGATAGACAAGAACCTGGAGGCAGGAGCCAATGCAGACATCAGA
GGATACTGCTTATGGGCCTCTCCACAGGGCTGGTTCAGTCTGCTATTTTA
TAGAAACTAGAACCACCTGCCCAGGGGTGACACTACCCAAAATGAGGTGG
TGCCTCCCCTATCAATCACTAATAAGAAAATGCTCCACAGGCTTGCTACA
GCCTCATCTTATAGAAGCATTTTCTTTGTTTTGTTTTTGTTTTTGTTTTG
TTTTGTTTTTGTTTTTGTTTTTTGTTTTTAGAGACAGGGTTTTTCTGTGT
AGCCCTGGCTGTCCTGGAACCCACTCTGTAGACCAGGCTGGCCTCAAACT
CAGAAATCTGCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGTGTGTG
CCTCCACCCCCGGCTTAGAAGCATTTTCTTAATTGAATTTCCCTCTTGTC
AGATGACTTTAGCTTGTGTCAAGTTGACTTTATACTAACCAGCTCATTCA
AGTCTCATTGCCTTACAAGTAGGTCTACTATCTATTTGGTTATTGAAGTT
CAAGGAATTAGATTTTAAAATTTGTTTTTGTATTGGATTTGAACAGAAAA
TTTACCCTTTTTTTTTTTTTCAATATTATGGAATAAAAGAACATTCTATT
TTTATAAATTTTTGGTTTCCAAAATCTATACTTCCTGACGAAAGTTTTGG
TTTGGACAATAATTT
CGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCTAGAGACACCTACTGTGTATGTGTT
CTAGGCCAAGTTTTGAGACACTGTGTGATTTAGCAACATTCTTGTTTTTC
AGCATTGCGTACATTTCTGTGTTTTCTTTCTTCATCAACAGATTCTATGG
ACAATGCTATTTTAGGTTTCAAACTCACAAAGCTTAAACACTCACCTTAA
GAACTATCTTCAAAGTTCTTAAATACGTTTAATACTCTTTTCTGATTCTT
CATAAAAATTGTAAGTATTTAGGTAGCATTTTAAGGAATATTTCATTAAG
TGTACATTATTAGAAGAGTTAATATTACATATTCTATTTCTAGGTGTATC
AGGAGTCATGAGTTAGAGGCAGGTGTCTTTTCAAGCAAACTTAGACTAAT
CATTCAGTCTTGGAAATAAAATGGTGCTTCATATGTTATATATAAAAAGG
ATTTATTACCTTCATAGCCTCTTAATACTTTATATCTTACTTACCTCAAG
TATAACCTCATTCAGAAGCCCTTTGGCCTTAAGAAATAATTTAATCTATT
AGCTCAGAAATGAATTTAAGTCAATCCTTGACAGTTAAGAGAAGGCAATG
GTTGTATTAAAAATATGGTGTCACTGAGGGTCACATCCGTGGCACAAAAG
ACAGTGTGGGCAGAAAAATATACACGTTGATTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no548_a03.g1 MSMg01no548_a03.g1 CHROMAT_FILE:
MSMg01no548_a03.g1 PHD_FILE: MSMg01no548_a03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:29:49 2005
         (495 letters)



>mm_chr8_43769737_43770631
          Length = 895

 Score =  957 bits (495), Expect = 0.0
 Identities = 495/495 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctagagacacctactgtgtatgtgttctaggccaagttttgagacactgtgtgatttagc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 695 ctagagacacctactgtgtatgtgttctaggccaagttttgagacactgtgtgatttagc 636

                                                                       
Query: 61  aacattcttgtttttcagcattgcgtacatttctgtgttttctttcttcatcaacagatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 aacattcttgtttttcagcattgcgtacatttctgtgttttctttcttcatcaacagatt 576

                                                                       
Query: 121 ctatggacaatgctattttaggtttcaaactcacaaagcttaaacactcaccttaagaac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 ctatggacaatgctattttaggtttcaaactcacaaagcttaaacactcaccttaagaac 516

                                                                       
Query: 181 tatcttcaaagttcttaaatacgtttaatactcttttctgattcttcataaaaattgtaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 tatcttcaaagttcttaaatacgtttaatactcttttctgattcttcataaaaattgtaa 456

                                                                       
Query: 241 gtatttaggtagcattttaaggaatatttcattaagtgtacattattagaagagttaata 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 gtatttaggtagcattttaaggaatatttcattaagtgtacattattagaagagttaata 396

                                                                       
Query: 301 ttacatattctatttctaggtgtatcaggagtcatgagttagaggcaggtgtcttttcaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 ttacatattctatttctaggtgtatcaggagtcatgagttagaggcaggtgtcttttcaa 336

                                                                       
Query: 361 gcaaacttagactaatcattcagtcttggaaataaaatggtgcttcatatgttatatata 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 gcaaacttagactaatcattcagtcttggaaataaaatggtgcttcatatgttatatata 276

                                                                       
Query: 421 aaaaggatttattaccttcatagcctcttaatactttatatcttacttacctcaagtata 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 aaaaggatttattaccttcatagcctcttaatactttatatcttacttacctcaagtata 216

                          
Query: 481 acctcattcagaagc 495
           |||||||||||||||
Sbjct: 215 acctcattcagaagc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 495
Length of database: 895
Length adjustment: 10
Effective length of query: 485
Effective length of database: 885
Effective search space:   429225
Effective search space used:   429225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)