Query= MSMg01no548_a12.b1 MSMg01no548_a12.b1 CHROMAT_FILE:
MSMg01no548_a12.b1 PHD_FILE: MSMg01no548_a12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:29:51 2005
(403 letters)
>mm_chr8_116620349_116621150
Length = 802
Score = 719 bits (372), Expect = 0.0
Identities = 390/396 (98%), Gaps = 1/396 (0%)
Strand = Plus / Plus
Query: 5 gaattcttccatgcccttgccacctctgagaccgtgggtcagtgtaaatccttcgtgtct 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttccatgcccttgccacctctgagaccgtgggtcagtgtaaatccttcgtgtct 264
Query: 65 ccagttgttctatcacatacgccgtcacagcgacgaggaagacaatacaggcaatatgga 124
|||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||
Sbjct: 265 ccagttgttctatcacatacgccgtcacagtgacaaggaagacaatacaggcaatatgga 324
Query: 125 ggatgtacaccatgctttagccagctcctaacattcctctcttgaactaccaccaagaaa 184
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 325 ggatgtacaccatgctttagccagctcctaatattcctctcttgaactaccaccaagaaa 384
Query: 185 aactccagattatatcaatagtaattcgaagaaatactttccagttcctaaaccagctat 244
||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 385 aactccaga-tatatcaatagtaattcgaagaaatattttccagttcctaaaccagctat 443
Query: 245 aacctttcccaccttcttatgctttccaataaatctaaccttcagctagtttattgagaa 304
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 aacatttcccaccttcttatgctttccaataaatctaaccttcagctagtttattgagaa 503
Query: 305 ccataaatgtgtatgtatgtgtgtgttaggattgaaaccatatgcaaatttcatcttatt 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ccataaatgtgtatgtatgtgtgtgttaggattgaaaccatatgcaaatttcatcttatt 563
Query: 365 ttgtattctttagatttcctccatgtttgtaacttg 400
||||||||||||||||||||||||||||||||||||
Sbjct: 564 ttgtattctttagatttcctccatgtttgtaacttg 599
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 403
Length of database: 802
Length adjustment: 9
Effective length of query: 394
Effective length of database: 793
Effective search space: 312442
Effective search space used: 312442
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no548_a12.g1 MSMg01no548_a12.g1 CHROMAT_FILE:
MSMg01no548_a12.g1 PHD_FILE: MSMg01no548_a12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:29:51 2005
(509 letters)
>mm_chr8_116764077_116764985
Length = 909
Score = 977 bits (505), Expect = 0.0
Identities = 508/509 (99%)
Strand = Plus / Minus
Query: 1 attgagaccaccagtgctgggcacatggcatgatttacttagggtgctctagtagagact 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 attgagaccaccagtgctgggcacatggcatgatttacttagggtgctctagtagagact 500
Query: 61 ccttttgtggttgatcattttcaagggtttgaatgatactgagagatacctcattcatac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 ccttttgtggttgatcattttcaagggtttgaatgatactgagagatacctcattcatac 440
Query: 121 tgaatggagtgtagtcatgccctccatttctcatgaaaacccaagccacctccatttcta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 tgaatggagtgtagtcatgccctccatttctcatgaaaacccaagccacctccatttcta 380
Query: 181 ataaaattccttacccttgtgatcagttcattctaaatgtgcttctcacaaaggtcttcg 240
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 ataaaactccttacccttgtgatcagttcattctaaatgtgcttctcacaaaggtcttcg 320
Query: 241 gcttcctccatgatccaattcacccagcatccttagagtgcaattacctgaaagttaaac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 gcttcctccatgatccaattcacccagcatccttagagtgcaattacctgaaagttaaac 260
Query: 301 tgtactccctttccaaaacacatggacagatcagctctttcttcacagcctgctttcttc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 tgtactccctttccaaaacacatggacagatcagctctttcttcacagcctgctttcttc 200
Query: 361 tctccctctccctcccctctctccctccccctttccctttcctcctctcctctctctccc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 tctccctctccctcccctctctccctccccctttccctttcctcctctcctctctctccc 140
Query: 421 tctccctcctctctctccccattatttcagctctctcttcacagcttgcttctctctctc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139 tctccctcctctctctccccattatttcagctctctcttcacagcttgcttctctctctc 80
Query: 481 cccaactatttttctttccatctctcttc 509
|||||||||||||||||||||||||||||
Sbjct: 79 cccaactatttttctttccatctctcttc 51
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 509
Length of database: 909
Length adjustment: 10
Effective length of query: 499
Effective length of database: 899
Effective search space: 448601
Effective search space used: 448601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
