Query= MSMg01no548_b13.b1 MSMg01no548_b13.b1 CHROMAT_FILE:
MSMg01no548_b13.b1 PHD_FILE: MSMg01no548_b13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:29:55 2005
(578 letters)
>mm_chr8_82834459_82835440
Length = 982
Score = 1073 bits (555), Expect = 0.0
Identities = 572/579 (98%), Gaps = 4/579 (0%)
Strand = Plus / Minus
Query: 4 ggaattctcccagctgctgctatagatcatgtgcagcagtccttgtgagagctaaggcac 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 782 ggaattctcccagctgctgctatagatcatgtgcagcagtccttgtgagagctaaggcac 723
Query: 64 tgctggacattttgttgtcttctaggttctgaatacagacaaagaactgccattacaacc 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 722 tgctggacattttgttgtcttctaggttctgaatacagacaaagaactgccattacaacc 663
Query: 124 tgctcattggacttagtgcttaggaacatcctttcctgcaagtggttcctgtcggtggcg 183
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 662 tgctcattggacttagtgcttaggaacatcctttcctgcaagtggttcctgtcggtggca 603
Query: 184 agggtagctctcatgctcattctttcttccttctcagcactagagccctgtcacttctta 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 agggtagctctcatgctcattctttcttccttctcagcactagagccctgtcacttctta 543
Query: 244 ctgtccttagactaagtaattgcctctcatcttcaatctggtcttgtacagtcaacaatt 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 ctgtccttagactaagtaattgcctctcatcttcaatctggtcttgtacagtcaacaatt 483
Query: 304 ccaaatgtaagtcctttgggagctgggagcctagctgtttagagcgtcctaagagtctct 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 ccaaatgtaagtcctttgggagctgggagcctagctgtttagagcgtcctaagagtctct 423
Query: 364 gatctcttcataatttcctctgccagtgctcttcatcccatcctgcaaccaaacacagga 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 gatctcttcataatttcctctgccagtgctcttcatcccatcctgcaaccaaacacagga 363
Query: 424 aggaga---tcttggctagccacaccccactgtgtcctgagatggtcatctaatccaaac 480
|||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 aggagatcttcttggttagccacaccccactgtgtcctgagatggtcatctaatccaaac 303
Query: 481 cagctc-ccctgctgaacctcttcttacttgattagtacatcaaaaaatatacaaggtca 539
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 cagctctccctgctgaacctcttcttacttgattagtacatcaaaaaatatacaaggtca 243
Query: 540 aagccttgtggcaagatctagagaggagtgggagccatg 578
||||||||||| |||||||||||||||||||||||||||
Sbjct: 242 aagccttgtggtaagatctagagaggagtgggagccatg 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 578
Length of database: 982
Length adjustment: 10
Effective length of query: 568
Effective length of database: 972
Effective search space: 552096
Effective search space used: 552096
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no548_b13.g1 MSMg01no548_b13.g1 CHROMAT_FILE:
MSMg01no548_b13.g1 PHD_FILE: MSMg01no548_b13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:29:55 2005
(532 letters)
>mm_chr8_82641551_82642482
Length = 932
Score = 934 bits (483), Expect = 0.0
Identities = 516/535 (96%), Gaps = 16/535 (2%)
Strand = Plus / Plus
Query: 1 ttgagccccatctcattgctaagcaccttagtctgcactgggagcacaagtgggcaaggc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttgagccccatctcattgctaagcaccttagtctgcactgggagcacaagtgggcaaggc 260
Query: 61 aaacacagttgctgtagtcactgacaaatattgaaagtttctctcttacacaaaaactat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaacacagttgctgtagtcactgacaaatattgaaagtttctctcttacacaaaaactat 320
Query: 121 ttattctagatttatttattttgtacgtgtgaatgatttttcttcacacgtatctatgca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttattctagatttatttattttgtacgtgtgaatgatttttcttcacacgtatctatgca 380
Query: 181 ccacatgtgagcctgtctccttcagaggtagtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 240
||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 381 ccacatgtgagcctgtctccttcagaggt------------tgtgtgtgtgtgtgtgtgt 428
Query: 241 gtgtgtattatatgtgacatacaagtagcccatgagctgactatgtacacgggactgtat 300
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 429 gtgtgtattatatgtgacatacaagtagcccatgagctgactgtgtacacgggactgtat 488
Query: 301 tgctagcggtgacacactggagtgaaaggaatgggacactgattggtcactcccagaact 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 tgctagcggtgacacactggagtgaaaggaatgggacactgattggtcactcccagaact 548
Query: 361 gggcagcaactatgaagtggaggacagaaaatgaagacggttaaaagattttaaaagttt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 gggcagcaactatgaagtggaggacagaaaatgaagacggttaaaagattttaaaagttt 608
Query: 421 aaaaaccacactgagacctctgcattctttcatctccatggtgatggtttgaatgac--g 478
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 609 aagaaccacactgagacctctgcattctttcatctccatggtgatggtttgaatgacatg 668
Query: 479 tgtgg-catatagtctgtgacctttgaatacttgactcccagtttggtatatgta 532
||||| | ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 669 tgtggtc-tatagtctgtgacctttgaatacttgactaccagtttggtatatgta 722
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 532
Length of database: 932
Length adjustment: 10
Effective length of query: 522
Effective length of database: 922
Effective search space: 481284
Effective search space used: 481284
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
