Query= MSMg01no548_p06.b1 MSMg01no548_p06.b1 CHROMAT_FILE:
MSMg01no548_p06.b1 PHD_FILE: MSMg01no548_p06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:31:01 2005
(576 letters)
>mm_chr8_116563929_116564905
Length = 977
Score = 1009 bits (522), Expect = 0.0
Identities = 561/574 (97%), Gaps = 1/574 (0%)
Strand = Plus / Plus
Query: 4 ggaattcctctatcctgtaaggaactgagcaaagtcagcatctgtgagaaacagtccctt 63
||||||||||| |||| ||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 204 ggaattcctctgtcctataaggaactgagcgaagtcagcatctgtgagaaacagtccctt 263
Query: 64 gatcatagacttcacaacctcaggtaatccatttctagtgtttataaactgtgtggtcta 123
||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 aatcatagactttacagcctcaggtaatccatttctagtgtttataaactgtgtggtcta 323
Query: 124 aggctaaggtattctgtggagcagtttgaaatgactacatctactcagtaggggctggct 183
|||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||
Sbjct: 324 aggctaaggtattctgtggagcagtttgaaataactacatctactcagtaggagctggct 383
Query: 184 agcctctggaatacggctgtattctacatcttcaatgacttttgcttgtagatgattcga 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 agcctctggaatacggctgtattctacatcttcaatgacttttgcttgtagatgattcga 443
Query: 244 aagggtgctaaaaaaaaaatatatcccattcctgatggaacaaactgcagcttcatgtct 303
||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 444 aagggtgctaaaaaaaatatatatcccattcctgatggaacaaaccgcagcttcatgtct 503
Query: 304 atagcctttgaaatagatttctgtacatggtatatgatgacattatggcaggcaatttgg 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 atagcctttgaaatagatttctgtacatggtatatgatgacattatggcaggcaatttgg 563
Query: 364 cagagtcctgagaactgaagaagtcaaaatgtttcccaagagcttctggaataaataaat 423
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 cagagtcatgagaactgaagaagtcaaaatgtttcccaagagcttctggaataaataaat 623
Query: 424 tgctttaaaaaaaa-tagtagccacgaaacaaacacagacatgcactacacagtgttgtg 482
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 tgctttaaaaaaaaatagtagccacgaaacaaacacagacatgcactacacagtgttgtg 683
Query: 483 atctaacttctgagctttgagaatcagcccaacttcaaacgtacagcaagagcggtcctg 542
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 684 atctaacttctgagctttgagaatcagcccagcttcaaacgtacagcaagagcggtcctg 743
Query: 543 ttcaacctagagtaaataataatctgggacccag 576
||||||||||||||||||||||||||||||||||
Sbjct: 744 ttcaacctagagtaaataataatctgggacccag 777
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 576
Length of database: 977
Length adjustment: 10
Effective length of query: 566
Effective length of database: 967
Effective search space: 547322
Effective search space used: 547322
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no548_p06.g1 MSMg01no548_p06.g1 CHROMAT_FILE:
MSMg01no548_p06.g1 PHD_FILE: MSMg01no548_p06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:31:01 2005
(589 letters)
>mm_chr8_116709306_116710293
Length = 988
Score = 679 bits (351), Expect = 0.0
Identities = 387/399 (96%), Gaps = 3/399 (0%)
Strand = Plus / Minus
Query: 1 attatattgatgatcaaagggttttttttgcattttattactgactttggttaacaatta 60
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 397 attatattgatgatcaaaggg-tttttttgcattttattactgactttggttaacaatta 339
Query: 61 aaaatagaaaaagaaaatcatatttttctgacagtattgggaaggaagccaagtctagag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 aaaatagaaaaagaaaatcatatttttctgacagtattgggaaggaagccaagtctagag 279
Query: 121 ccctagccctgatttatctttgcttctcaagtagtgtcccaatcctccttttcattgact 180
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 ccctagccctgatttatccttgcttctcaagtagtgtcccaatcctccttttcattgaca 219
Query: 181 gtgtggacttttttattatgttttgaacaagaatggccccaatagatccacatatttgaa 240
||||| ||||||| |||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 218 gtgtgaactttttaattatgttttgaacaagaatggccccaatagatccatatatttgaa 159
Query: 241 tgtttagttattaaggaatggcactacttgacagggattatcagatgttgttttgttgga 300
|||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct: 158 tgtttagttattaaggaatggcactacttgacagggattatcaggtgtggttttgttggc 99
Query: 301 gtagg-agtggccttgttagaggaaatgtgtcactaggggtgggctttgggatttccagt 359
||||| | ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98 gtaggta-tggccctgttagaggaaatgtgtcactaggggtgggctttgggatttccagt 40
Query: 360 gttcaaaccaggcccacctgtcccttctgctgcctgtag 398
|||||||||||||||||||||||||||||||||||||||
Sbjct: 39 gttcaaaccaggcccacctgtcccttctgctgcctgtag 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 589
Length of database: 988
Length adjustment: 10
Effective length of query: 579
Effective length of database: 978
Effective search space: 566262
Effective search space used: 566262
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
