BAC Information

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BAC

Clone NameB6Ng01-001A14
Chromosome9 (Build37)3 (Build37)
Map Location 28,331,759 - 28,332,68441,058,856 - 41,059,411
singlet/doubletsingletsinglet
Overlap geneOpcml
Upstream geneLOC666440, LOC100041202
Downstream geneHnt, LOC625222
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-001A14.bB6Ng01-001A14.g
ACCDH839467DH839468
length924883
definitionDH839467|Mus musculus domesticus DNA, BAC clone: B6Ng01-001A14, 5' end.DH839468|Mus musculus domesticus DNA, BAC clone: B6Ng01-001A14, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(28,331,759 - 28,332,684)(41,058,856 - 41,059,411)
sequence
gaattctacagaaacatgctttggaactctgctgacccatgttttaggca
gagcactaaggaacttgggctcacaagtggtattttcactgtttcttcat
cttatctttctttttctctctctttctctttctctctctctatctatcta
tttatctatctatctatgtctatatatctaggcatctgtgcatctatata
tatctatgtatatctagatagatagatgtatgtatcgattatatcaatgt
atgtatgtatctatgtatctatgactatctagccatctatctatttatcc
ttctatgtatctaagcatctatgcatctatgtatctatgtctctatgtct
atctatctatctatctatctatctatctatctatctatctatctagacat
atctattatatcaatgtatctatatatctatgtagtatgtatctatgtat
gtatgtatgtctctatctatcatatatttatttatttttcctttttagaa
aataccaacaggatctttgaggcatacacctgaatggaaggatgatactg
aacaagatcagaactgcaggttagttaggagacaagtctcaatgaggaaa
caaggtcatctcatagtaggaagaagacctcccaggtcccactaaaatga
caaggaaattaacaagggatgattcaaccttaccaaggcacattgacttt
ttggagttcagaggccaaatgaggggaggctggataatccatattttagt
agataataaaaatatatgcactttaatttgtaataaaagggatattacaa
aggtacctggcaatttttctggagaaaaagactgtgggctactaaaatat
acatagaaattcccggcagtatttgtagtatacaaagtgaggttacactt
tttggcaaagtaaataaaacaata
gaattctttgtttagttctgagccccattttttaatggggttatttgatt
ttctggagtccaccttcttgagttctttttatatattggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggtca
ttttgttttattgatggtgtcttttgccttgcagaagctttgcaacttta
tgaggtaccatttatcgattcttgatcttacagcacaagccattgctgtt
ctattcagggattttccccctgtacccatatattcaaggcttttccctac
tttctcctctataagtttcagtgtctctggttttatgtggagttccttaa
tccacttagatttgacattagtacaaggagataggaatggatcaattcga
aatcttctacatgataacagccagttgtgccagcaccatttgttgaaaat
gctgtcttttttccactggatggttttagctcccttgtcaaaaatcaagt
gaccataggtgtgtgggttcatctctgggtcttcaattctattccattgg
tctacttgtctgtcgctataccagtaccatgcagtttatatcacaattgc
tctatagtacagctttaggtcaggcatggtgattccaccagaggttctgt
tatccttgagaagagtttttgctatcctaggttttttgttataccagatg
aatctgccgattttcctttctaattcgttgaagaattgagttgggatttt
gatggggattacattgaatctgtagattgcttttggcaagatagccattt
ttactatattgatcctgccaatccatgagcatgggagatctttccatctt
ctgagatttcttatattcctttcttccgagact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_28331759_28332684
seq2: B6Ng01-001A14.b_46_969 (reverse)

seq1  TATTGTTTTATTTACTTTGCCATAAAGTGTTAACCTTCACTTTGTATACT  50
      |||||||||||||||||||||| |||||| ||||| ||||||||||||||
seq2  TATTGTTTTATTTACTTTGCCAAAAAGTG-TAACC-TCACTTTGTATACT  48

seq1  ACAAATACT-CCTGGTATTTCTATGTATATTTTAGTAGCCCACAGTCTTT  99
      ||||||||| || || ||||||||||||||||||||||||||||||||||
seq2  ACAAATACTGCCGGGAATTTCTATGTATATTTTAGTAGCCCACAGTCTTT  98

seq1  TTCTCCTG-AAAATTGCCAGGTACCTTTTTTAATATACCTTTTATTAAAA  148
      |||||| | |||||||||||||||| ||| |||||| |||||||||| ||
seq2  TTCTCCAGAAAAATTGCCAGGTACC-TTTGTAATATCCCTTTTATTACAA  147

seq1  ATTAAATTGCATATATTTTTATTATCTACTAAAATATGGATTATCCAGCC  198
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAGTGCATATATTTTTATTATCTACTAAAATATGGATTATCCAGCC  197

seq1  TCCCCTCATTTTTGCCTCTGAACTCCAAAAAGTCAATGTGCCTTGGTAAG  248
      |||||||| ||| |||||||||||||||||||||||||||||||||||||
seq2  TCCCCTCA-TTTGGCCTCTGAACTCCAAAAAGTCAATGTGCCTTGGTAAG  246

seq1  GTTGAATCATCCCTTGTTAACTTCCTTGTCATTTTAGTGGGACCTGGGAG  298
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  GTTGAATCATCCCTTGTTAATTTCCTTGTCATTTTAGTGGGACCTGGGAG  296

seq1  GTTTTCTTCCTACTATGAGATGACCTTGTTTCCTCATTGAGACTTGTCTC  348
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTCTTCCTACTATGAGATGACCTTGTTTCCTCATTGAGACTTGTCTC  346

seq1  CTAACTAACCTGCAGTTCTGATCTTGTTCAGTATCATCCTTCCATTCAGG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACTAACCTGCAGTTCTGATCTTGTTCAGTATCATCCTTCCATTCAGG  396

seq1  TGTATGCCTCAAAGATCCTGTTGGTATTTTCTAAAAAGGAAAAATAAATA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGCCTCAAAGATCCTGTTGGTATTTTCTAAAAAGGAAAAATAAATA  446

seq1  AATATATGATAGATAGAGACATACATACATACATAGATACATACTACATA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATATGATAGATAGAGACATACATACATACATAGATACATACTACATA  496

seq1  GATATATAGATACATTGATATAATAGATATGTCTAGATAGATAGATAGAT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATATAGATACATTGATATAATAGATATGTCTAGATAGATAGATAGAT  546

seq1  AGATAGATAGATAGATAGATAGATAGATAGACATAGAGACATAGATACAT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAGATAGATAGATAGATAGATAGATAGACATAGAGACATAGATACAT  596

seq1  AGATGCATAGATGCTTAGATACATAGAAGGATAAATAGATAGATGGCTAG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGCATAGATGCTTAGATACATAGAAGGATAAATAGATAGATGGCTAG  646

seq1  ATAGTCATAGATACATAGATACATACATACATTGATATAATCGATACATA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTCATAGATACATAGATACATACATACATTGATATAATCGATACATA  696

seq1  CATCTATCTATCTAGATATACATAGATATATATAGATGCACAGATGCCTA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTATCTATCTAGATATACATAGATATATATAGATGCACAGATGCCTA  746

seq1  GATATATAGACATAGATAGATAGATAAATAGATAGATAGAGAGAGAGAAA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATATAGACATAGATAGATAGATAAATAGATAGATAGAGAGAGAGAAA  796

seq1  GAGAAAGAGAGAGAAAAAGAAAGATAAGATGAAGAAACAGTGAAAATACC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAGAGAGAGAAAAAGAAAGATAAGATGAAGAAACAGTGAAAATACC  846

seq1  ACTTGTGAGCCCAAGTTCCTTAGTGCTCTGCCTAAAACATGGGTCAGCAG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGTGAGCCCAAGTTCCTTAGTGCTCTGCCTAAAACATGGGTCAGCAG  896

seq1  AGTTCCAAAGCATGTTTCTGTAGAATTC  926
      ||||||||||||||||||||||||||||
seq2  AGTTCCAAAGCATGTTTCTGTAGAATTC  924

seq1: chr3_41058856_41059411
seq2: B6Ng01-001A14.g_394_948 (reverse)

seq1  AGTCTCTGAAGAAAGAAATTAAAGAAGATCTCAGAAGATGGAAAGATCTC  50
      |||||| |||||||| |||  ||||| |||||||||||||||||||||||
seq2  AGTCTCGGAAGAAAGGAATATAAGAA-ATCTCAGAAGATGGAAAGATCTC  49

seq1  CCATGCTCATGGATTGGCAGGATCAACATTGTAAAAATGGCTATCTTGCC  100
      |||||||||||||||||||||||||| || ||||||||||||||||||||
seq2  CCATGCTCATGGATTGGCAGGATCAATATAGTAAAAATGGCTATCTTGCC  99

seq1  AAAAGCAATCTACAGATTCAATGCAATCCCCATCAAAATTCCAACTCAAT  150
      ||||||||||||||||||||||| ||||||||||||||| ||||||||||
seq2  AAAAGCAATCTACAGATTCAATGTAATCCCCATCAAAATCCCAACTCAAT  149

seq1  TCTTCAACGAATTTGAAAGAGCAATCTGCAAATTCATCTGGAATAACAAA  200
      ||||||||||||| |||||   |||| ||| |||||||||| ||||||||
seq2  TCTTCAACGAATTAGAAAGGAAAATCGGCAGATTCATCTGGTATAACAAA  199

seq1  AAACCTAGGATAGCAAAAACTCTTCTCAAGGATAACAGAACCTCTGGTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCTAGGATAGCAAAAACTCTTCTCAAGGATAACAGAACCTCTGGTGG  249

seq1  AATCACCATGCCTGACCTAAAGCTTTACTACAGAGCAATTGTGATAAAAA  300
      |||||||||||||||||||||||| ||||| ||||||||||||||| |||
seq2  AATCACCATGCCTGACCTAAAGCTGTACTATAGAGCAATTGTGATATAAA  299

seq1  CTGCATGGTACTGGTATAGTGACAGACAAGCAGACCAATGGAATAGAATT  350
      ||||||||||||||||||| |||||||||| |||||||||||||||||||
seq2  CTGCATGGTACTGGTATAGCGACAGACAAGTAGACCAATGGAATAGAATT  349

seq1  GAAGACTCAGAAACGAATCCACACACCTATGGTCACTTGATCTTCGACAA  400
      |||||| |||| | ||| ||||||||||||||||||||||| || |||||
seq2  GAAGACCCAGAGATGAACCCACACACCTATGGTCACTTGATTTTTGACAA  399

seq1  GGGAGCTAAAACCATCCAGTGGAAAAAAGACAGCATTTTCAACAAATGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGCTAAAACCATCCAGTGGAAAAAAGACAGCATTTTCAACAAATGGT  449

seq1  GCTGGCACAACTGGTTGTTATCATGTAGAAGAATGCGAATTGATCCACTC  500
      |||||||||||||| ||||||||||||||||| | |||||||||||| ||
seq2  GCTGGCACAACTGGCTGTTATCATGTAGAAGATTTCGAATTGATCCATTC  499

seq1  CTATCTCCTTGTACTAAGGTCAAATCTAAGTGGATCAAGGAACGCCACAT  550
      ||||||||||||||||| ||||||||||||||||| ||||||| ||||||
seq2  CTATCTCCTTGTACTAATGTCAAATCTAAGTGGATTAAGGAACTCCACAT  549

seq1  AAAACC  556
      ||||||
seq2  AAAACC  555