BAC Information

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BAC

Clone NameB6Ng01-001H20
Chromosome9 (Build37)
Map Location 56,812,456 - 56,888,821
singlet/doubletdoublet
Overlap geneSnupn, Ptpn9
Upstream gene4930563M21Rik, LOC664995, LOC665005, Rcn2, Pstpip1, Tspan3, C230081A13Rik, Hmg20a, LOC100039535, LOC100039549, LOC640537, Lingo1, Odf3l1, Cspg4, Sh3px3, Imp3
Downstream gene2700012I20Rik, Sin3a, Man2c1, Neil1, Commd4, 1700041C23Rik, Trcg1, 1700017B05Rik, EG330948, Ppcdc, Scamp5, D9Wsu149, LOC620603, Rpp25, Cox5a, 2310046O06Rik, Mpi1, Scamp2, Ulk3, Cplx3, Lman1l, Csk, Cyp1a2, Cyp1a1, Edc3, Clk3, Arid3b, LOC665235, LOC677423, LOC100039509, Ubl7, Sema7a, Cyp11a1, 4930535E21Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-001H20.bB6Ng01-001H20.g
ACCDH839794DH839795
length1,1671,144
definitionDH839794|Mus musculus domesticus DNA, BAC clone: B6Ng01-001H20, 5' end.DH839795|Mus musculus domesticus DNA, BAC clone: B6Ng01-001H20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(56,812,456 - 56,813,641)(56,887,656 - 56,888,821)
sequence
gaattccagatcctttaaatttttacttccaagtgtagaattctaagtgc
gctttaccgcagctaattctagaatagttttatcaccaacacacacatac
ttacagatactccatagtcatttgttcccaactagctcataactcagtta
tcccgtttatactaatctacgttctgctacatggctgattacctctcctc
agtttcatatgtctggcttcttccacagctttgtagttagtctctctgag
cctgattcttcccgcagtccctctctctgtctggaagtcccgcctactgt
ttccttcccagctactggccatcagctctttattaaaactagtcagggaa
tttcttaggtgggggaaggacagagacaccttcacacagtatacaaaaat
gttattccagtagccattttatatatatatacaaacaatacatcatatat
aataaatattatataaaatatataataaagtatatatattatgtagtaaa
acaaatacatttatatattatatgtgtatatataatataatttatatata
atataaaataatataatttatattatatataaatatgtatatatatatat
ataataaaacatttatatatactctttagaaaaatgtctgttctatcctt
tgccagtcattctccactatttttcattttccttttacaaaatctgtcta
catttatcaacgagcctattctggataactgtggccttttgtgactgtct
tctttcagtgagcataagattttcatggctcatttatgttacagtattta
tctttctgtgtgtttattgtcaatattccattaacaggacatatttactc
atccttcaattaatggctttttgtgttgcttctgctttttgacgattatg
aatgatgctaccatggttttgtgtgtgtgtgtgtgttgtagggttgcctt
ttaatatgcttacattttaatatgctaactattatatatactctttagaa
aaatgtctgtctattctttacattattttcttatgtcagaatatttcatt
tatattagtattatgtgtgcacaatggagcccatgttgatgaacacttgc
aatggctattttcttcacttgcttggcatgtagtacttagtcctgatttc
ctaccttgtctccttcc
gaattcactttgtagatcaggatagcctcaaactcacagagatctgcttg
cctctgcctcctgggtactaggattaaagcagtgaaccacaccacacttc
acttaactacactgtctttaaaaataaaaaataaaaaaaattgaggggag
cgttgaacaattgaaactctgatatttacttcacaatccagaattccaag
agagatacagtttgctctctgtaggcagtcttactagaccctggttgaag
aagggaagaccaggagctagtaaggcttatggttctagatcatcaagcaa
gagctccacagttcaatcaaaggcacaaccatgaagtcctctcaattcta
aaatagcagcagattgaaatggtacaagcagacaacctcgctctttcaag
atgattgcttgaggcaacgagtaactacaggagtacccatatcaaaatct
taaagctcccaaaagtgtattctttcttgctcccaagttatttccttaat
tcctactgaggaaactgaagatagtggtgcatacctgtaattccatcata
caagagggagagacagaaatatcattagttcaaagtcatccttggctaca
cagcaagttttagggggcaccctgggctagatgagaccctatggagtagg
aagaaaaggtgtagggtgggtgacagtggctatggggaaagttgtgcatg
gtagttttgaagagtggttcggcacttaagagactgagacaggaggatca
tcattttaggctagccagatacaaagtctgttcaaggatagttagggaac
aactgttctgccttggaagcagatttaatatataaatctagagatcttca
gcacataaaaagaaaaagaagttagagaaaatagtatttctttctctttt
ttgttttgtttgtttttcaggacaaggattctctatgtacagctctggct
atcctggaactagcttgtaagtcagctggctctactctcagagatcctct
acttctgcacctagtactagataaagcatgtgcacaactgcccagcttcc
cctctatatatgcctgctttcccttcgttccttacaactcaggacttcat
catcggacaggcctcgaccatgagaactacagcttagcttcttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_56812456_56813641
seq2: B6Ng01-001H20.b_40_1206

seq1  GAATTCCAGATCCTTTAAATTTTTACTTCCAAGTGTAGAATTCTAAGTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGATCCTTTAAATTTTTACTTCCAAGTGTAGAATTCTAAGTGC  50

seq1  GCTTTACCGCAGCTAATTCTAGAATAGTTTTATCACCAACACACACATAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTACCGCAGCTAATTCTAGAATAGTTTTATCACCAACACACACATAC  100

seq1  TTACAGATACTCCATAGTCATTTGTTCCCAACTAGCTCATAACTCAGTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGATACTCCATAGTCATTTGTTCCCAACTAGCTCATAACTCAGTTA  150

seq1  TCCCGTTTATACTAATCTACGTTCTGCTACATGGCTGATTACCTCTCCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCGTTTATACTAATCTACGTTCTGCTACATGGCTGATTACCTCTCCTC  200

seq1  AGTTTCATATGTCTGGCTTCTTCCACAGCTTTGTAGTTAGTCTCTCTGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCATATGTCTGGCTTCTTCCACAGCTTTGTAGTTAGTCTCTCTGAG  250

seq1  CCTGATTCTTCCCGCAGTCCCTCTCTCTGTCTGGAAGTCCCGCCTACTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGATTCTTCCCGCAGTCCCTCTCTCTGTCTGGAAGTCCCGCCTACTGT  300

seq1  TTCCTTCCCAGCTACTGGCCATCAGCTCTTTATTAAAACTAGTCAGGGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTCCCAGCTACTGGCCATCAGCTCTTTATTAAAACTAGTCAGGGAA  350

seq1  TTTCTTAGGTGGGGGAAGGACAGAGACACCTTCACACAGTATACAAAAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTAGGTGGGGGAAGGACAGAGACACCTTCACACAGTATACAAAAAT  400

seq1  GTTATTCCAGTAGCCATTTTATATATATATACAAACAATACATCATATAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATTCCAGTAGCCATTTTATATATATATACAAACAATACATCATATAT  450

seq1  AATAAATATTATATAAAATATATAATAAAGTATATATATTATGTAGTAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAATATTATATAAAATATATAATAAAGTATATATATTATGTAGTAAA  500

seq1  ACAAATACATTTATATATTATATGTGTATATATAATATAATTTATATATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATACATTTATATATTATATGTGTATATATAATATAATTTATATATA  550

seq1  ATATAAAATAATATAATTTATATTATATATAAATATGTATATATATATAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAAAATAATATAATTTATATTATATATAAATATGTATATATATATAT  600

seq1  ATAATAAAACATTTATATATACTCTTTAGAAAAATGTCTGTTCTATCCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATAAAACATTTATATATACTCTTTAGAAAAATGTCTGTTCTATCCTT  650

seq1  TGCCAGTCATTCTCCACTATTTTTCATTTTCCTTTTACAAAATCTGTCTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAGTCATTCTCCACTATTTTTCATTTTCCTTTTACAAAATCTGTCTA  700

seq1  CATTTATCAACGAGCCTATTCTGGATAACTGTGGCCTTTTGTGACTGTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTATCAACGAGCCTATTCTGGATAACTGTGGCCTTTTGTGACTGTCT  750

seq1  TCTTTCAGTGAGCATAAGATTTTCATGGCTCATTTATGTTACAGTATTTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCAGTGAGCATAAGATTTTCATGGCTCATTTATGTTACAGTATTTA  800

seq1  TCTTTCTGTGTGTTTATTGTCAATATTCCATTAACAGGACATATTTACTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTGTGTGTTTATTGTCAATATTCCATTAACAGGACATATTTACTC  850

seq1  ATCCTTCAATTAATGGCTTTTTGTGTTGCTTCTGCTTTTTGACGATTATG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTTCAATTAATGGCTTTTTGTGTTGCTTCTGCTTTTTGACGATTATG  900

seq1  AATGATGCTACCATGGTTTTGTGTGTGTGTGTGTG-TGTAGGG-TGGCTT  948
      ||||||||||||||||||||||||||||||||||| ||||||| || |||
seq2  AATGATGCTACCATGGTTTTGTGTGTGTGTGTGTGTTGTAGGGTTGCCTT  950

seq1  TTAATATGCTTACATTTTAATATGCTAACTATTTATATATACTCTTTAGA  998
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TTAATATGCTTACATTTTAATATGCTAACTA-TTATATATACTCTTTAGA  999

seq1  AAAATGTCTGTTCTATCCTTTACCATTTATTTTCTTTATGTTCAAGAATA  1048
      |||||||||| ||||| ||||||   |||||||| ||||||   ||||||
seq2  AAAATGTCTG-TCTATTCTTTAC--ATTATTTTC-TTATGT--CAGAATA  1043

seq1  TTTCATTTATTATTAGTATTATGTGTGCACAAGTGTGCCCATGTGGTGA-  1097
      ||||||||| ||||||||||||||||||||||  | ||||||||  ||| 
seq2  TTTCATTTA-TATTAGTATTATGTGTGCACAATGGAGCCCATGT--TGAT  1090

seq1  GACAACTTGCAGTGGCT-TTTTCCTCACTGGCTTGCACAGCAAGCACGTT  1146
      ||  ||||||| ||||| ||||| ||||| |||||  ||   || || ||
seq2  GAACACTTGCAATGGCTATTTTCTTCACTTGCTTG-GCATGTAGTAC-TT  1138

seq1  AGCCCTGATTTCCTACCCTTCTGTCCTCCCTTCTCCTTCC  1186
      || |||||||||||| |||| | |||| ||          
seq2  AGTCCTGATTTCCTA-CCTTGTCTCCTTCC----------  1167

seq1: chr9_56887656_56888821
seq2: B6Ng01-001H20.g_67_1210 (reverse)

seq1  AAAGAAGCTAGGGCTGTAG-TCTCATGGTCGAGCGCTGTCTGGAATTGAT  49
      ||||||||||  ||||||| |||||||||||||  ||||| |    ||||
seq2  AAAGAAGCTA-AGCTGTAGTTCTCATGGTCGAGGCCTGTCCG---ATGAT  46

seq1  GAGGTCCTGGGTTTGTAGAGAAACGAAAGGGAAAGCAGGGCATATATTAA  99
      || |||||| | ||||| || |||| ||||||||||| |||||||||  |
seq2  GAAGTCCTGAG-TTGTA-AGGAACG-AAGGGAAAGCA-GGCATATAT--A  90

seq1  GAGGGGAAAGCTGGGCAGTTGTGGCACATGCCTTTAATCCTAGTACTAGG  149
      |||||| ||||||||||||||| ||||||| |||||   |||||||||||
seq2  GAGGGG-AAGCTGGGCAGTTGT-GCACATG-CTTTA--TCTAGTACTAGG  135

seq1  GTGGCAGAAGTAGGAGGATCTCTGAGAGTTAGAGGCCAGCCTGACCTACA  199
         ||||||||| ||||||||||||||| |||| ||||| ||||| ||| 
seq2  --TGCAGAAGTA-GAGGATCTCTGAGAG-TAGA-GCCAG-CTGACTTAC-  178

seq1  AAGCTAGTTCCAGGATAGCCAGAGCTGTTACATAGAGAATCCTTGTCTTG  249
      ||||||||||||||||||||||||||| ||||||||||||||||||| ||
seq2  AAGCTAGTTCCAGGATAGCCAGAGCTG-TACATAGAGAATCCTTGTCCTG  227

seq1  AAAAACAAACAAAACAAAAAAGAGAAAGAAATACTATTTTCTCTAACTTC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACAAACAAAACAAAAAAGAGAAAGAAATACTATTTTCTCTAACTTC  277

seq1  TTTTTCTTTTTATGTGCTGAAGATCTCTAGATTTATATATTAAATCTGCT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTTTTTATGTGCTGAAGATCTCTAGATTTATATATTAAATCTGCT  327

seq1  TCCAAGGCAGAACAGTTGTTCCCTAACTATCCTTGAACAGACTTTGTATC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAGGCAGAACAGTTGTTCCCTAACTATCCTTGAACAGACTTTGTATC  377

seq1  TGGCTAGCCTAAAATGATGATCCTCCTGTCTCAGTCTCTTAAGTGCCGAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTAGCCTAAAATGATGATCCTCCTGTCTCAGTCTCTTAAGTGCCGAA  427

seq1  CCACTCTTCAAAACTACCATGCACAACTTTCCCCATAGCCACTGTCACCC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTCTTCAAAACTACCATGCACAACTTTCCCCATAGCCACTGTCACCC  477

seq1  ACCCTACACCTTTTCTTCCTACTCCATAGGGTCTCATCTAGCCCAGGGTG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTACACCTTTTCTTCCTACTCCATAGGGTCTCATCTAGCCCAGGGTG  527

seq1  CCCCCTAAAACTTGCTGTGTAGCCAAGGATGACTTTGAACTAATGATATT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCTAAAACTTGCTGTGTAGCCAAGGATGACTTTGAACTAATGATATT  577

seq1  TCTGTCTCTCCCTCTTGTATGATGGAATTACAGGTATGCACCACTATCTT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCTCTCCCTCTTGTATGATGGAATTACAGGTATGCACCACTATCTT  627

seq1  CAGTTTCCTCAGTAGGAATTAAGGAAATAACTTGGGAGCAAGAAAGAATA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTCCTCAGTAGGAATTAAGGAAATAACTTGGGAGCAAGAAAGAATA  677

seq1  CACTTTTGGGAGCTTTAAGATTTTGATATGGGTACTCCTGTAGTTACTCG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTTTGGGAGCTTTAAGATTTTGATATGGGTACTCCTGTAGTTACTCG  727

seq1  TTGCCTCAAGCAATCATCTTGAAAGAGCGAGGTTGTCTGCTTGTACCATT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCTCAAGCAATCATCTTGAAAGAGCGAGGTTGTCTGCTTGTACCATT  777

seq1  TCAATCTGCTGCTATTTTAGAATTGAGAGGACTTCATGGTTGTGCCTTTG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATCTGCTGCTATTTTAGAATTGAGAGGACTTCATGGTTGTGCCTTTG  827

seq1  ATTGAACTGTGGAGCTCTTGCTTGATGATCTAGAACCATAAGCCTTACTA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAACTGTGGAGCTCTTGCTTGATGATCTAGAACCATAAGCCTTACTA  877

seq1  GCTCCTGGTCTTCCCTTCTTCAACCAGGGTCTAGTAAGACTGCCTACAGA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCTGGTCTTCCCTTCTTCAACCAGGGTCTAGTAAGACTGCCTACAGA  927

seq1  GAGCAAACTGTATCTCTCTTGGAATTCTGGATTGTGAAGTAAATATCAGA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAAACTGTATCTCTCTTGGAATTCTGGATTGTGAAGTAAATATCAGA  977

seq1  GTTTCAATTGTTCAACGCTCCCCTCAATTTTTTTTATTTTTTATTTTTAA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCAATTGTTCAACGCTCCCCTCAATTTTTTTTATTTTTTATTTTTAA  1027

seq1  AGACAGTGTAGTTAAGTGAAGTGTGGTGTGGTTCACTGCTTTAATCCTAG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGTGTAGTTAAGTGAAGTGTGGTGTGGTTCACTGCTTTAATCCTAG  1077

seq1  TACCCAGGAGGCAGAGGCAAGCAGATCTCTGTGAGTTTGAGGCTATCCTG  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCAGGAGGCAGAGGCAAGCAGATCTCTGTGAGTTTGAGGCTATCCTG  1127

seq1  ATCTACAAAGTGAATTC  1166
      |||||||||||||||||
seq2  ATCTACAAAGTGAATTC  1144