BAC Information

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BAC

Clone NameB6Ng01-001O10
Chromosome9 (Build37)
Map Location 17,146,599 - 17,288,143
singlet/doubletdoublet
Overlap genenone
Upstream geneFat3, EG434373, LOC100040074
Downstream geneLOC100040090, LOC244710, LOC100040508, EG665548, LOC665554, LOC665567, Chordc1, Naalad2, B020006M18Rik, Map1lc3-ps, Mbd3l2, Zfp558, Mbd3l1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-001O10.bB6Ng01-001O10.g
ACCDH840090DH840091
length9731,125
definitionDH840090|Mus musculus domesticus DNA, BAC clone: B6Ng01-001O10, 5' end.DH840091|Mus musculus domesticus DNA, BAC clone: B6Ng01-001O10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(17,287,531 - 17,288,143)(17,146,599 - 17,147,735)
sequence
gaattcatattttccaggaacctatttaatcttactttctcttcactcca
ctgggctggaaggaaatggtatgttgtctacttggggaaagacctcccct
ttgggagtgaagaagagtcttagtcagggtttctattgctgtgataaaac
accaagaccaagaacaactttggaagaaaagggtttattttgcttaaaca
gccatgttataatccatcttcctgggacatcagggtagaaattcaaggca
ggaaactgaatgcaggaactgaagctgaggcaatggtggagtgttagttg
ttgtcttgatcttcccggcctgttcatattttttttttaaatatacccac
agggttactgacccagtgatggcactacacacagagttgacatctctaat
gacaatcactaacaaataaaatgtacaacagacttgcctacttgcaaatt
aatggaggctctttctgaaatgagagtctgtcttctcaaattatcttgct
taagtcaatttggcacaatactagtcagaataattgacccactgatggct
tgacacaccagtacattgctgaacagtagccctttcttttttgtttatcc
cacagtatctcataatataagcacggtataactttaaaagtactacagtt
ttaaaatgtcaataattttaaagttaaatctcaaaaagaaaaaaatccaa
agtctctttcaaagtttaagccttctaaaatatcaaatgtacccaaaata
ttcatagtctgtctttctaaaatagctccagtctctctaaaaatacctcg
catttttcagctgtggaatcttgtaaaatgaaagtgagtcaaatagttgt
acagtccaagagaaaataacccgggtcagtaaaattaaatcaagcaaatc
aagggactcagtcataatcttctgagctcctccaaaatttgtgcacatat
aaaatattttagcttttctgctt
gaattctctggtgatagcaatgtaaatacaaaatccttgatttgattatc
ctaataattctgcaatttaagaataataattagagaggttggaatggttt
ttaatcaaggggaagttattgtgggtcaggaagagcagagttctatttaa
gacctatttttgccacatattttgatttataattgaaaatgaagagtaaa
tatttatgcgaatatgaaattcagagcagaatccagggaaaagcttataa
gctttagactaaaaatgtaatttcattttttaatttgtcattcagcaata
taaaatttttaaagatggatgtgctggtttataaagcattaaattttgtc
tgaacatttgatgctaaaggtcatagagccttttgaatctttttcagaga
taaccaatgtttggatttcataatgattaatattgagttccacagtatga
aatggtagaagtatgtttagggccattgcagaaaatgatagaaactttgc
cttaaggataagccaaaagcaaaagaactgtgtttgtttgtttgcttctt
tggtattcatcttcttttcagtgtttgtgtgagagtctgtatgcatatct
gtacactatctactttcgatgtgcttgtagcatccagaagggatgtcata
cctctagaatctaaattatttgtgattgtgaggcaccatattgatgctga
aaaccacagttgggtcctctggaagagaagcagtgtctgaacactgagcc
ctctccagcactagagcaactgctattttgttgttactaaaattcaagtc
aaaacaaagtcttaagttaatttctagtttgattttggcatgagtcatga
ccttgatactaaatttgtgaacttaggcaagcaacttgtccagtgacact
tttgctcatcatgattatattatcactgataatgatgatactacctaaaa
cacttaataaattgagaatataaatataaactatacatatacatatgcac
acacatatatatatattcacacatatacacacactacatatacatataca
tataataattattaacattttataaaggtagttataactatatttaggtg
ataattagtctttgtcaacatgaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_17287531_17288143
seq2: B6Ng01-001O10.b_46_658 (reverse)

seq1  ATGAGATACTGTGGGATAAACAAAAAAGAAAGGGCTACTGTTCAGCAATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGATACTGTGGGATAAACAAAAAAGAAAGGGCTACTGTTCAGCAATG  50

seq1  TACTGGTGTGTCAAGCCATCAGTGGGTCAATTATTCTGACTAGTATTGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGGTGTGTCAAGCCATCAGTGGGTCAATTATTCTGACTAGTATTGTG  100

seq1  CCAAATTGACTTAAGCAAGATAATTTGAGAAGACAGACTCTCATTTCAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAATTGACTTAAGCAAGATAATTTGAGAAGACAGACTCTCATTTCAGA  150

seq1  AAGAGCCTCCATTAATTTGCAAGTAGGCAAGTCTGTTGTACATTTTATTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGCCTCCATTAATTTGCAAGTAGGCAAGTCTGTTGTACATTTTATTT  200

seq1  GTTAGTGATTGTCATTAGAGATGTCAACTCTGTGTGTAGTGCCATCACTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGTGATTGTCATTAGAGATGTCAACTCTGTGTGTAGTGCCATCACTG  250

seq1  GGTCAGTAACCCTGTGGGTATATTTAAAAAAAAAATATGAACAGGCCGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAGTAACCCTGTGGGTATATTTAAAAAAAAAATATGAACAGGCCGGG  300

seq1  AAGATCAAGACAACAACTAACACTCCACCATTGCCTCAGCTTCAGTTCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATCAAGACAACAACTAACACTCCACCATTGCCTCAGCTTCAGTTCCT  350

seq1  GCATTCAGTTTCCTGCCTTGAATTTCTACCCTGATGTCCCAGGAAGATGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTCAGTTTCCTGCCTTGAATTTCTACCCTGATGTCCCAGGAAGATGG  400

seq1  ATTATAACATGGCTGTTTAAGCAAAATAAACCCTTTTCTTCCAAAGTTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATAACATGGCTGTTTAAGCAAAATAAACCCTTTTCTTCCAAAGTTGT  450

seq1  TCTTGGTCTTGGTGTTTTATCACAGCAATAGAAACCCTGACTAAGACTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGGTCTTGGTGTTTTATCACAGCAATAGAAACCCTGACTAAGACTCT  500

seq1  TCTTCACTCCCAAAGGGGAGGTCTTTCCCCAAGTAGACAACATACCATTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCACTCCCAAAGGGGAGGTCTTTCCCCAAGTAGACAACATACCATTT  550

seq1  CCTTCCAGCCCAGTGGAGTGAAGAGAAAGTAAGATTAAATAGGTTCCTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCAGCCCAGTGGAGTGAAGAGAAAGTAAGATTAAATAGGTTCCTGG  600

seq1  AAAATATGAATTC  613
      |||||||||||||
seq2  AAAATATGAATTC  613

seq1: chr9_17146599_17147735
seq2: B6Ng01-001O10.g_67_1191

seq1  GAATTCTCTGGTGATAGCAATGTAAATACAAAATCCTTGATTTGATTATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGGTGATAGCAATGTAAATACAAAATCCTTGATTTGATTATC  50

seq1  CTAATAATTCTGCAATTTAAGAATAATAATTAGAGAGGTTGGAATGGTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATAATTCTGCAATTTAAGAATAATAATTAGAGAGGTTGGAATGGTTT  100

seq1  TTAATCAAGGGGAAGTTATTGTGGGTCAGGAAGAGCAGAGTTCTATTTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATCAAGGGGAAGTTATTGTGGGTCAGGAAGAGCAGAGTTCTATTTAA  150

seq1  GACCTATTTTTGCCACATATTTTGATTTATAATTGAAAATGAAGAGTAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTATTTTTGCCACATATTTTGATTTATAATTGAAAATGAAGAGTAAA  200

seq1  TATTTATGCGAATATGAAATTCAGAGCAGAATCCAGGGAAAAGCTTATAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTATGCGAATATGAAATTCAGAGCAGAATCCAGGGAAAAGCTTATAA  250

seq1  GCTTTAGACTAAAAATGTAATTTCATTTTTTAATTTGTCATTCAGCAATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTAGACTAAAAATGTAATTTCATTTTTTAATTTGTCATTCAGCAATA  300

seq1  TAAAATTTTTAAAGATGGATGTGCTGGTTTATAAAGCATTAAATTTTGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATTTTTAAAGATGGATGTGCTGGTTTATAAAGCATTAAATTTTGTC  350

seq1  TGAACATTTGATGCTAAAGGTCATAGAGCCTTTTGAATCTTTTTCAGAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACATTTGATGCTAAAGGTCATAGAGCCTTTTGAATCTTTTTCAGAGA  400

seq1  TAACCAATGTTTGGATTTCATAATGATTAATATTGAGTTCCACAGTATGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCAATGTTTGGATTTCATAATGATTAATATTGAGTTCCACAGTATGA  450

seq1  AATGGTAGAAGTATGTTTAGGGCCATTGCAGAAAATGATAGAAACTTTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGTAGAAGTATGTTTAGGGCCATTGCAGAAAATGATAGAAACTTTGC  500

seq1  CTTAAGGATAAGCCAAAAGCAAAAGAACTGTGTTTGTTTGTTTGCTTCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAGGATAAGCCAAAAGCAAAAGAACTGTGTTTGTTTGTTTGCTTCTT  550

seq1  TGGTATTCATCTTCTTTTCAGTGTTTGTGTGAGAGTCTGTATGCATATCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTATTCATCTTCTTTTCAGTGTTTGTGTGAGAGTCTGTATGCATATCT  600

seq1  GTACACTATCTACTTTCGATGTGCTTGTAGCATCCAGAAGGGATGTCATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACACTATCTACTTTCGATGTGCTTGTAGCATCCAGAAGGGATGTCATA  650

seq1  CCTCTAGAATCTAAATTATTTGTGATTGTGAGGCACCATATTGATGCTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTAGAATCTAAATTATTTGTGATTGTGAGGCACCATATTGATGCTGA  700

seq1  AAACCACAGTTGGGTCCTCTGGAAGAGAAGCAGTGTCTGAACACTGAGCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCACAGTTGGGTCCTCTGGAAGAGAAGCAGTGTCTGAACACTGAGCC  750

seq1  CTCTCCAGCACTAGAGCAACTGCTATTTTGTTGTTACTAAAATTCAAGTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCAGCACTAGAGCAACTGCTATTTTGTTGTTACTAAAATTCAAGTC  800

seq1  AAAACAAAGTCTTAAGTTAATTTCTAGTTTGATTTTGGCATGAGTCATGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAAAGTCTTAAGTTAATTTCTAGTTTGATTTTGGCATGAGTCATGA  850

seq1  CCTTGATACTAAATTTGTGAACTTAGGCAAGCAACTTGTCCAGTGACAAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  CCTTGATACTAAATTTGTGAACTTAGGCAAGCAACTTGTCCAGTGAC-AC  899

seq1  TTTTGCTCATCAATGATTATATTATCACTGATAATGATGATACTTACCTA  950
      ||||||||||| ||||||||||||||||||||||||||||||| ||||||
seq2  TTTTGCTCATC-ATGATTATATTATCACTGATAATGATGATAC-TACCTA  947

seq1  AAACACTTAATAAATTGAGAATATAAATATAAACTATACATATACATATG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACTTAATAAATTGAGAATATAAATATAAACTATACATATACATATG  997

seq1  CACACACATATATATATATTCACACATATACACACACTTACATATACATA  1050
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  CACACACATATATATATATTCACACATATACACACAC-TACATATACATA  1046

seq1  TTACATATATACATTATTTAACATTTTATAAA-GTAGTTTATAAACTATA  1099
       ||||||||   |||| ||||||||||||||| |||| |||| |||||||
seq2  -TACATATAATAATTA-TTAACATTTTATAAAGGTAG-TTAT-AACTATA  1092

seq1  ATTTTAGGTGATAATTTTAGTCTTTGTTCAACATGACA  1137
        ||||||||||||  |||||||||| |||||||||||
seq2  --TTTAGGTGATAA--TTAGTCTTTG-TCAACATGACA  1125