BAC Information

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BAC

Clone NameB6Ng01-002G21
Chromosome9 (Build37)
Map Location 4,027,704 - 4,181,143
singlet/doubletdoublet
Overlap genenone
Upstream gene4930433N12Rik, LOC664797, Olfr369-ps1, Alkbh8, Cwf19l2, LOC384911, Gucy1a2, LOC100039236
Downstream geneLOC384912, LOC100039253, Aasdhppt, Kbtbd3, LOC664860, 8430410K20Rik, Gria4, EG664889
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-002G21.bB6Ng01-002G21.g
ACCDH840456DH840457
length1,0111,124
definitionDH840456|Mus musculus domesticus DNA, BAC clone: B6Ng01-002G21, 5' end.DH840457|Mus musculus domesticus DNA, BAC clone: B6Ng01-002G21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(4,027,704 - 4,028,241)(4,180,017 - 4,181,143)
sequence
gaattcctaagataggcacagccaccatccaccataactcccaggcagga
ctatggagcataaataaattttatgccttggtccggctatttttattata
taatcagggaggaattgtaggatctcccagcctgaagcaggctgatccag
actttgaccttgctgccactaagaaggagattacctatggtggatcctct
gacctagatgactcttttgttttgtcacctgccactgctctctccaagac
agtgctatctgctgagagacccctgagatattccggaggaacatcctatc
ctgcatgtcgcctacaggctggctccagacaccaagaatggactggcagg
gaatgggccttcccccttataagcacattctcttagtaaactggcaggcc
ttgaacagcttcctgtcttggtctccattaatctcttgctgtctaagtct
ttttcagacccagcctgcctcccaggtgtacctggttcaagtaggccgtg
ggaaggtatacaacagtaatcatcttatgagagatctaatacagctctct
gtgaccatacaaagctcagaacaccctcagctgggcttgtgtggctttct
tttgttttgcaaacagtgcctagggaagttctcccctgccttcaggggaa
tttctttttagcaaacaaaacaaaaacaaaaaaacaaaaaacaaaaacaa
acaaacaaaaaacaaaaacaaaaccaacaacaaaacaaaacaaaaaaatc
attgttgcagatctatccagatgttattctaaataaagtttaaattcaga
atttataaaaggtcaatcaggctgtagaacatataaagacattacaatct
ggcttgcctacttcatataaaataattatagattcaaagttgcatcctgt
taattataaaggatttgcttctagtgaactggtgatcactggaaattttg
cttctaggtatggctaatgtagctttacattatgtaaaaaaaaaatttta
tgtctctgctt

gaattctattgttaatgtagtttgaagttagatgttgttggtttcagatt
tattttacctccttgtcaaactgccagactttgcatactgagaccccgat
tttcagatactttcatatgactaagaaggtaaactgtttgaataatctag
aaacctcagcaatgtttggaaatagttttgaaaaatttatgtgttctttg
taaacccataggaaagaaataatattaacagaacttagcaagcttagact
atatttagagaactcttagatttctttttactcttctaaacaaatattta
agaagcaaaataaggtacaggcagatttttgtttgttttgatttgtttta
gattattcgtagattagtcaaagcactgttcagttatgtgaaactttatt
caagtcaaaaccacctaaacaagagactagattcaatattaaaggtattt
cccagcagctaaagaagtcttttttataatatagcttcaactgttttttg
ctaatactgtagaagcaagttattcagataatactgtgcaaaagttaccc
atactgccaggttatttctgccatcatcttctcttggatgcttgggatcc
tttcaagtagatttccaacagatcaaagcctgtttgatctgtggaaggac
actgtggtgagactacatggtagcctaaagcaaaacaagacaggaaagga
tcaaggagaaggacacaatccaaccatgcaaatgccctccagtaagccct
acctgaagactccactctcatgatgacacacttgagatcagctttcatgt
atatgctttggcatacatttcatatcacaactaatatacacttcaccttg
tgtgacccatgacttctgaaaaattgatactccctacataaaagggcatt
tgttgtgttacatggttgatttaaaggatcttggtgtcttttaacctttt
ccaaaaaaaaaaaaaaatcactaatgagagtaccctttcatatactagta
attctgcaaagaatttatttttaaggtttgaagtctgccactgtgatgaa
catttctctttaatttttgctgcatgacatattgaacagggatcaacaaa
agggagaccactctctcaaaataa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_4027704_4028241
seq2: B6Ng01-002G21.b_44_581

seq1  GAATTCCTAAGATAGGCACAGCCACCATCCACCATAACTCCCAGGCAGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTAAGATAGGCACAGCCACCATCCACCATAACTCCCAGGCAGGA  50

seq1  CTATGGAGCATAAATAAATTTTATGCCTTGGTCCGGCTATTTTTATTATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGGAGCATAAATAAATTTTATGCCTTGGTCCGGCTATTTTTATTATA  100

seq1  TAATCAGGGAGGAATTGTAGGATCTCCCAGCCTGAAGCAGGCTGATCCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCAGGGAGGAATTGTAGGATCTCCCAGCCTGAAGCAGGCTGATCCAG  150

seq1  ACTTTGACCTTGCTGCCACTAAGAAGGAGATTACCTATGGTGGATCCTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGACCTTGCTGCCACTAAGAAGGAGATTACCTATGGTGGATCCTCT  200

seq1  GACCTAGATGACTCTTTTGTTTTGTCACCTGCCACTGCTCTCTCCAAGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTAGATGACTCTTTTGTTTTGTCACCTGCCACTGCTCTCTCCAAGAC  250

seq1  AGTGCTATCTGCTGAGAGACCCCTGAGATATTCCGGAGGAACATCCTATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCTATCTGCTGAGAGACCCCTGAGATATTCCGGAGGAACATCCTATC  300

seq1  CTGCATGTCGCCTACAGGCTGGCTCCAGACACCAAGAATGGACTGGCAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCATGTCGCCTACAGGCTGGCTCCAGACACCAAGAATGGACTGGCAGG  350

seq1  GAATGGGCCTTCCCCCTTATAAGCACATTCTCTTAGTAAACTGGCAGGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGGGCCTTCCCCCTTATAAGCACATTCTCTTAGTAAACTGGCAGGCC  400

seq1  TTGAACAGCTTCCTGTCTTGGTCTCCATTAATCTCTTGCTGTCTAAGTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAACAGCTTCCTGTCTTGGTCTCCATTAATCTCTTGCTGTCTAAGTCT  450

seq1  TTTTCAGACCCAGCCTGCCTCCCAGGTGTACCTGGTTCAAGTAGGCCGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAGACCCAGCCTGCCTCCCAGGTGTACCTGGTTCAAGTAGGCCGTG  500

seq1  GGAAGGTATACAACAGTAATCATCTTATGAGAGATCTA  538
      ||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGTATACAACAGTAATCATCTTATGAGAGATCTA  538


seq1: chr9_4180017_4181143
seq2: B6Ng01-002G21.g_67_1190 (reverse)

seq1  TTATTTTGAG-GTGTGGTCTCCCTTTTGTTGATCACTGTTTCATATGTCA  49
      |||||||||| | ||||||||||||||||||||| |||||  ||||||||
seq2  TTATTTTGAGAGAGTGGTCTCCCTTTTGTTGATCCCTGTTCAATATGTCA  50

seq1  TGCAGCAAAAAATTAAAGAGAAATG-TCATCACAGTGCAGGACTTCAAAA  98
      |||||| |||||||||||||||||| |||||||||||   ||||||||| 
seq2  TGCAGC-AAAAATTAAAGAGAAATGTTCATCACAGTGGCAGACTTCAAAC  99

seq1  CTTAAAAATTAAATTCTTTTGCAGAATTTACTAGTATATG-AAGGGTACT  147
      |||||||| ||||||| ||||||||| ||||||||||||| |||||||||
seq2  CTTAAAAA-TAAATTC-TTTGCAGAA-TTACTAGTATATGAAAGGGTACT  146

seq1  CTCATTAGTGATTTTTTTTTTTTTTTTGGAAAAGGTTAAAAAGACACCAA  197
      ||||||||||| ||||||||||||||||||||||||| ||||||||||||
seq2  CTCATTAGTGA-TTTTTTTTTTTTTTTGGAAAAGGTT-AAAAGACACCAA  194

seq1  GATCCTTTTAAATCAACCATGTAACACAACAAATGCCCTTTTATGTA-GG  246
      ||||| ||||||||||||||||||||||||||||||||||||||||| ||
seq2  GATCC-TTTAAATCAACCATGTAACACAACAAATGCCCTTTTATGTAGGG  243

seq1  AGTATCAATTTTTCAGAAGTCATGGGTCACACAAGGTGAAGTGTATATTA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATCAATTTTTCAGAAGTCATGGGTCACACAAGGTGAAGTGTATATTA  293

seq1  GTTGTGATATGAAATGTATGCCAAAGCATATACATGAAAGCTGATCTCAA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTGATATGAAATGTATGCCAAAGCATATACATGAAAGCTGATCTCAA  343

seq1  GTGTGTCATCATGAGAGTGGAGTCTTCAGGTAGGGCTTACTGGAGGGCAT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTCATCATGAGAGTGGAGTCTTCAGGTAGGGCTTACTGGAGGGCAT  393

seq1  TTGCATGGTTGGATTGTGTCCTTCTCCTTGATCCTTTCCTGTCTTGTTTT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCATGGTTGGATTGTGTCCTTCTCCTTGATCCTTTCCTGTCTTGTTTT  443

seq1  GCTTTGGGCTACCATGTAGTCTCACCACAGTGTCCTTCCACAGATCAAAC  496
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTAGGCTACCATGTAGTCTCACCACAGTGTCCTTCCACAGATCAAAC  493

seq1  AGGCTTTGATCTGTTGGAAATCTACTTGAAAGGATCCCAAGCATCCAAGA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTTTGATCTGTTGGAAATCTACTTGAAAGGATCCCAAGCATCCAAGA  543

seq1  GAAGATGATGGCAGAAATAACCTGGCAGTATGGGTAACTTTTGCACAGTA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGATGATGGCAGAAATAACCTGGCAGTATGGGTAACTTTTGCACAGTA  593

seq1  TTATCTGAATAACTTGCTTCTACAGTATTAGCAAAAAACAGTTGAAGCTA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTGAATAACTTGCTTCTACAGTATTAGCAAAAAACAGTTGAAGCTA  643

seq1  TATTATAAAAAAGACTTCTTTAGCTGCTGGGAAATACCTTTAATATTGAA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATAAAAAAGACTTCTTTAGCTGCTGGGAAATACCTTTAATATTGAA  693

seq1  TCTAGTCTCTTGTTTAGGTGGTTTTGACTTGAATAAAGTTTCACATAACT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGTCTCTTGTTTAGGTGGTTTTGACTTGAATAAAGTTTCACATAACT  743

seq1  GAACAGTGCTTTGACTAATCTACGAATAATCTAAAACAAATCAAAACAAA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAGTGCTTTGACTAATCTACGAATAATCTAAAACAAATCAAAACAAA  793

seq1  CAAAAATCTGCCTGTACCTTATTTTGCTTCTTAAATATTTGTTTAGAAGA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAATCTGCCTGTACCTTATTTTGCTTCTTAAATATTTGTTTAGAAGA  843

seq1  GTAAAAAGAAATCTAAGAGTTCTCTAAATATAGTCTAAGCTTGCTAAGTT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAAAGAAATCTAAGAGTTCTCTAAATATAGTCTAAGCTTGCTAAGTT  893

seq1  CTGTTAATATTATTTCTTTCCTATGGGTTTACAAAGAACACATAAATTTT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTAATATTATTTCTTTCCTATGGGTTTACAAAGAACACATAAATTTT  943

seq1  TCAAAACTATTTCCAAACATTGCTGAGGTTTCTAGATTATTCAAACAGTT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAACTATTTCCAAACATTGCTGAGGTTTCTAGATTATTCAAACAGTT  993

seq1  TACCTTCTTAGTCATATGAAAGTATCTGAAAATCGGGGTCTCAGTATGCA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTTCTTAGTCATATGAAAGTATCTGAAAATCGGGGTCTCAGTATGCA  1043

seq1  AAGTCTGGCAGTTTGACAAGGAGGTAAAATAAATCTGAAACCAACAACAT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCTGGCAGTTTGACAAGGAGGTAAAATAAATCTGAAACCAACAACAT  1093

seq1  CTAACTTCAAACTACATTAACAATAGAATTC  1127
      |||||||||||||||||||||||||||||||
seq2  CTAACTTCAAACTACATTAACAATAGAATTC  1124


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