BAC Information

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BAC

Clone NameB6Ng01-003M12
Chromosome9 (Build37)
Map Location 58,992,760 - 59,113,238
singlet/doubletdoublet
Overlap geneEG665330
Upstream geneStra6, Islr, Islr2, LOC665268, Pml, Stoml1, Loxl1, Tbc1d21, 6030419C18Rik, Cd276, Nptn, 2410076I21Rik, Hcn4, Neo1, LOC100040186
Downstream geneAdpgk, Bbs4, Arih1, LOC621119, 4930425N13Rik, Hexa, Brunol6, Parp6, Pkm2, 4933407I18Rik, Gramd2, Senp8, Myo9a, EG665385, LOC100040361, Nr2e3, EG665389, Thsd4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-003M12.bB6Ng01-003M12.g
ACCDH841386DH841387
length1,132269
definitionDH841386|Mus musculus domesticus DNA, BAC clone: B6Ng01-003M12, 5' end.DH841387|Mus musculus domesticus DNA, BAC clone: B6Ng01-003M12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(58,992,760 - 58,993,899)(59,112,970 - 59,113,238)
sequence
gaattcagtgtaatcagacagcgcctagcatctgggatgttcctggtgtt
catgtctgtctgtctgtttctctctctctctctccctctctctctctctc
tctctctcattctctctacttcctcctcctgttccttcttctgccttccc
tcctttttattctgatcttgcctcatagcccacactgatcttaaactttc
aatccccctgtgtcatccttccaggcaatgccaccacacccagtagcagc
tatctgtgttttctttctttctttctttctttctttctttctttctttct
ttctttctttctttctctttcttcctttcttcctttcttcctttcttcct
ttcttcctttcttcctttcttcctttcttcctttctttccttctttcctt
ctttccttctttcttttttcttctgtgttttcttaaagaccagtagggta
ggattcctaaaagacagactgtggagtcagggacagagcccagtggtaaa
gcatctgtctatcatgaacaaggtcagaggtttaatcctcagcaatgaga
agaaattcattcaaattgtccctcaaccattcctccaatattggggtcct
cacagggatactctgtagcctcttgtaccctggttatgaacacgtgactg
cttcttgcatatccatctcttttttttttttttcatttctcagaaaattt
tattggctttttggataaagtttattttccaggaaggatgatcccatcgt
acttctgctggaaccagcgcatggcctcctccttgctgattctgtgtttt
ggccccaacgcagcctgttctgcgcttcttgtctgcgatgctgaaccctg
gcctacccagcaccacataaaagtccaggccgtagatcccaatgcttggg
tcgtatttgatgcccaggtcaatgtgctcttgaattccaaaccaaagttt
cagtatccgagagttatttttcgcaactcacactcttcgcaccttcaggc
ttttctcagaatttctctgcttggctccgcggactgtgcagtgaacagca
tttttcttcattctcgatgcaaaggacttgacaggtgtattagctttgga
gaacccaggttctggcctgtgagctgcctcca
tgatctaggttttgttaatttgggggccattgtagagagagtaccttatt
ccctcaggaccatccctgggttaagaggcttttgtttttcatctgtgatg
ttcaaagttaacaagaaaatgtgttgtccctgtccccatgtctcccctct
ccccacatggctggttccttgtataacttctaggaattcataacagatac
acataggggtaagagggttctctctctcttctctctctcctctctctctc
tctctcaaccccctctctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_58992760_58993899
seq2: B6Ng01-003M12.b_45_1176

seq1  GAATTCAGTGTAATCAGACAGCGCCTAGCATCTGGGATGTTCCTGGTGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTGTAATCAGACAGCGCCTAGCATCTGGGATGTTCCTGGTGTT  50

seq1  CATGTCTGTCTGTCTGTTTCTCTCTCTCTCTCTCCCTCTCTCTCTCTCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTCTGTCTGTCTGTTTCTCTCTCTCTCTCTCCCTCTCTCTCTCTCTC  100

seq1  TCTCTCTCATTCTCTCTACTTCCTCCTCCTGTTCCTTCTTCTGCCTTCCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCATTCTCTCTACTTCCTCCTCCTGTTCCTTCTTCTGCCTTCCC  150

seq1  TCCTTTTTATTCTGATCTTGCCTCATAGCCCACACTGATCTTAAACTTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTTTATTCTGATCTTGCCTCATAGCCCACACTGATCTTAAACTTTC  200

seq1  AATCCCCCTGTGTCATCCTTCCAGGCAATGCCACCACACCCAGTAGCAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCCCCTGTGTCATCCTTCCAGGCAATGCCACCACACCCAGTAGCAGC  250

seq1  TATCTGTGTTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTGTGTTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCT  300

seq1  TTCTTTCTTTCTTTCTCTTTCTTCCTTTCTTCCTTTCTTCCTTTCTTCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTCTTTCTTTCTCTTTCTTCCTTTCTTCCTTTCTTCCTTTCTTCCT  350

seq1  TTCTTCCTTTCTTCCTTTCTTCCTTTCTTCCTTTCTTTCCTTCTTTCCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCCTTTCTTCCTTTCTTCCTTTCTTCCTTTCTTTCCTTCTTTCCTT  400

seq1  CTTTCCTTCTTTCTTTTTTCTTCTGTGTTTTCTTAAAGACCAGTAGGGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCTTCTTTCTTTTTTCTTCTGTGTTTTCTTAAAGACCAGTAGGGTA  450

seq1  GGATTCCTAAAAGACAGACTGTGGAGTCAGGGACAGAGCCCAGTGGTAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTCCTAAAAGACAGACTGTGGAGTCAGGGACAGAGCCCAGTGGTAAA  500

seq1  GCATCTGTCTATCATGAACAAGGTCAGAGGTTTAATCCTCAGCAATGAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCTGTCTATCATGAACAAGGTCAGAGGTTTAATCCTCAGCAATGAGA  550

seq1  AGAAATTCATTCAAATTGTCCCTCAACCATTCCTCCAATATTGGGGTCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATTCATTCAAATTGTCCCTCAACCATTCCTCCAATATTGGGGTCCT  600

seq1  CACAGGGATACTCTGTAGCCTCTTGTACCCTGGTTATGAACACGTGACTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGGATACTCTGTAGCCTCTTGTACCCTGGTTATGAACACGTGACTG  650

seq1  CTTCTTGCATATCCATCTCTTTTTTTTTTTTTTCATTTCTCAGAAAATTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTGCATATCCATCTCTTTTTTTTTTTTTTCATTTCTCAGAAAATTT  700

seq1  TATTGGCTTTTTGGATAAAGTTTATTTTCCAGGAAGGATGATCCCATCGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGGCTTTTTGGATAAAGTTTATTTTCCAGGAAGGATGATCCCATCGT  750

seq1  ACTTCTGCTGGAACCAGCGCATGGCCTCCTCCTTGCTGATTCTGTG-TTT  799
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  ACTTCTGCTGGAACCAGCGCATGGCCTCCTCCTTGCTGATTCTGTGTTTT  800

seq1  GGCCCCAACGCAGCCTGTTCTGCGCTTCTTGTCTGCGATGCTGAACCCTG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCCAACGCAGCCTGTTCTGCGCTTCTTGTCTGCGATGCTGAACCCTG  850

seq1  GCCTACCCAGCACCACATAGAAGTCCAGGCCGTAGATCCCAATGCTTGGG  899
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GCCTACCCAGCACCACATAAAAGTCCAGGCCGTAGATCCCAATGCTTGGG  900

seq1  TCGTATTTGATGCCCAGGTCAATGTGCTCTTGAATTCCAAAACCAAAGTT  949
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TCGTATTTGATGCCCAGGTCAATGTGCTCTTGAATTCC-AAACCAAAGTT  949

seq1  TCCAGTATCCGAGAAGTTATTTTTCCGCAACTCACACTC-TCGCACCTTC  998
      | ||||||||||| |||||||||| |||||||||||||| ||||||||||
seq2  T-CAGTATCCGAG-AGTTATTTTT-CGCAACTCACACTCTTCGCACCTTC  996

seq1  AGGCCTTTCTCCAGAATTTCCTCTGCCTTGGCTCCGCGGACTGTGCAGTG  1048
      |||| ||||| |||||||| ||||| ||||||||||||||||||||||||
seq2  AGGCTTTTCT-CAGAATTT-CTCTG-CTTGGCTCCGCGGACTGTGCAGTG  1043

seq1  AACAGCAATCTTCTCATTTCTCCGGATGCCAAAGGACCTGACA-GTGTAT  1097
      ||||||| | ||||   |||||  |||| |||||||| ||||| ||||||
seq2  AACAGCATTTTTCTTCATTCTC--GATG-CAAAGGACTTGACAGGTGTAT  1090

seq1  CTAGCTTTGGAGAACACCAGGGTCTGGCCTGTGAGCTG-CTCCA  1140
       |||||||||||||| ||||| |||||||||||||||| |||||
seq2  -TAGCTTTGGAGAAC-CCAGGTTCTGGCCTGTGAGCTGCCTCCA  1132

seq1: chr9_59112970_59113238
seq2: B6Ng01-003M12.g_70_344 (reverse)

seq1  GAGAGAG------GAGAGAGAGAGAGAGAGGAGAGAGAGAAGAGAGAGAG  44
      |||||||      |||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGGGGGTTGAGAGAGAGAGAGAGAGGAGAGAGAGAAGAGAGAGAG  50

seq1  AACCCTCTTACCCCTATGTGTATCTGTTATGAATTCCTAGAAGTTATACA  94
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCTCTTACCCCTATGTGTATCTGTTATGAATTCCTAGAAGTTATACA  100

seq1  AGGAACCAGCCATGTGGGGAGAGGGGAGACATGGGGACAGGGACAACACA  144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAACCAGCCATGTGGGGAGAGGGGAGACATGGGGACAGGGACAACACA  150

seq1  TTTTCTTGTTAACTTTGAACATCACAGATGAAAAACAAAAGCCTCTTAAC  194
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTGTTAACTTTGAACATCACAGATGAAAAACAAAAGCCTCTTAAC  200

seq1  CCAGGGATGGTCCTGAGGGAATAAGGTACTCTCTCTACAATGGCCCCCAA  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGATGGTCCTGAGGGAATAAGGTACTCTCTCTACAATGGCCCCCAA  250

seq1  ATTAACAAAACCTAGATCAGAATTC  269
      |||||||||||||||||||||||||
seq2  ATTAACAAAACCTAGATCAGAATTC  275