BAC Information

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BAC

Clone NameB6Ng01-004O11
Chromosome9 (Build37)
Map Location 93,116,631 - 93,117,846
singlet/doubletsinglet
Overlap genenone
Upstream genePlscr1, Plscr2, 1700057G04Rik, LOC666850, Plscr4, Plod2, LOC100039921, LOC100039931, LOC100039944, LOC667009, LOC100040114
Downstream geneLOC674371, LOC384967
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-004O11.bB6Ng01-004O11.g
ACCDH842189DH842190
length1,1901,163
definitionDH842189|Mus musculus domesticus DNA, BAC clone: B6Ng01-004O11, 5' end.DH842190|Mus musculus domesticus DNA, BAC clone: B6Ng01-004O11, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctaaacccaaataagcctccagtgcttacacttgtgttgtatagt
gtatgtcaaactcactgccaggcaaagacattctcaacatcatacaactg
cacaaccatgaaggaccagacagtaaaaattggaacaaaccacaaagcca
taaaagcccccaatactgacccctttcccatgacaatgactgctggtaat
aacagaaatttgaattttcacataatttcttgtaggatacagaagaaact
gctatttatgggggaaataatcgttactttgttaaaacattatataatga
cctaattctattctgaagtatgcttctaaaagaaaggaaacctactatca
cccaaatatattttatattttatatgtttttagacttggacatagctact
atttgattctacttataaaagttcatggaaaatataacttgtattgggac
caacctgtagcataaacaccaactacaaatatgtggcattagaaaataag
tttatataactcttttaatgatggtttcagacacatgactatacctacag
ataagactcctgatttgaaaatatataatatatgtatatgtaatatatat
atatatatacatatatatatattctaaaattttaatctcctaaaatgaaa
acatattatgattaaaagttttaggtctgggataatataataaaaacaga
aacatctgtgtgttcttttctaagaagaaatatggtaaataatatgataa
gacattattgttcaaatttttaaaatgagattctttataaggtcaaaaat
tgaaaagaaggaccatgccaataaatggtaaagatacagaaaacatgaag
tcacaaagcagtttttatgtacccatgctaggcactaccttctgatctga
cagagtgtctagtcaatcctccaggttgtatactctggcggaatggaagc
tgatggtatagggcaataactagaattatcagagcccaagtatgggtaaa
agataaacaatttgtaacttgtagtagatttcaccaagcagaatgagtaa
tttatgcatccatggagtaattgacttcaaacataattttagtagtacag
ccaaaaatacaggtctacctgctaatttatcctattatttgaggagtaaa
atcttgggaggtgacagacccgatctgagaggaggagtca
gaattcaatgacatcaagtggacctagtggttatatttagcatattacaa
ccaaactccaaaaaatatcacttctattcagcagcaacagaggcatcttt
acaataaaccagatattgggacataaaacgaatctgaggaaatctgtaaa
aattgaaataactccatgctgtatgctatttgaatacaatgatataaaaa
tgtaacagcaaatacaaagaaatccccagtgagtacacaaactcagggag
attatccaactcattacttaatgatgaatgggtcaaaaaatcaagaaaga
tacaagtttcaaaacctgaatgaaaacacaatacagtaaaacttctggaa
tgcattaaattctttcttcagagggaaaaaattaaagataaataaaaaat
ggaaaggacacaaatcaatgattcagtaatgcaactaaaatattagaaaa
caaggaacaaaccaaacttaagtcacatctaatatttcaaagaaatagaa
agaaaaccctatggtaaaattccccaaatcccccacaaaataccctggat
acctaaaacaactttgagcaaaaagtcaactcttgagagataactcttcc
acatatcaagatacattatgaagctgtagtaggaaaaacagacatataga
ccacaggaacaaaataagtgactcaaggattactgcatacaactatgtca
atttaacatttaataatgataacaaaaccatacactgtaatgaagaacca
tcttcaacaaatcgtgcaagaaaactggtttcccagatacagaaaaatga
agttagatctgaacctgacacaaaatacaactctctatgtatgaaggggc
aaaagtgaaacctggatcatttaaagtgctagaagcaaacatagtatgta
cataaaagtgtatgagagatactgcagagtcattcattctgaataaaatg
catctgccataacaaagtctctctatgacagatccagaaagtattaggtg
tgcacaatagaaaaaagagtcgaagaagccaccactcatgaaagtctgca
gcaaaactgacaagtgatatctataccagactcagaaccacggagaacca
tatgaattaatggctgtaatgacagattccaatttcatgagaccttagag
gattcaaaaatat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_93116631_93117846
seq2: B6Ng01-004O11.b_47_1236 (reverse)

seq1  TGACTCCTCCTTCCTTTTCATGATCTGGTTTCTGTCACTCTCCAATGATT  50
      ||||||||||     | ||| |||| ||  |||||||| |||| | || |
seq2  TGACTCCTCC-----TCTCA-GATCGGG--TCTGTCAC-CTCCCAAGA-T  40

seq1  TTTACTTCCTCAAAAATTTATATGAATAAAATTATGCAGTGTAGA-CTGT  99
      ||||| ||||||||   | ||| ||   |||||| |||| ||||| ||||
seq2  TTTAC-TCCTCAAA---TAATAGGA--TAAATTA-GCAG-GTAGACCTGT  82

seq1  ATTTTTGGCTGTACTTACTAAAATAATTGTTTTGAAGTCCAATTAACTCA  149
      |||||||||||||| ||||||||| ||   |||||||| ||||| |||| 
seq2  ATTTTTGGCTGTAC-TACTAAAATTAT--GTTTGAAGT-CAATT-ACTCC  127

seq1  TTGGATGCATAAATTACTCATTCTTGCTTTTGGTGAAATCTACTACAAGT  199
       |||||||||||||||||||||| |||  |||||||||||||||||||||
seq2  ATGGATGCATAAATTACTCATTC-TGC--TTGGTGAAATCTACTACAAGT  174

seq1  TACAAATTGTTTATCTATTACCCATACTTGGGCTCCTGATAATTCTAGTT  249
      |||||||||||||||| ||||||||||||||||| |||||||||||||||
seq2  TACAAATTGTTTATCTTTTACCCATACTTGGGCT-CTGATAATTCTAGTT  223

seq1  ATTGCCCTATACCATCAGCTTCCATTCCGCCAGAGTATACAACCTGGAGG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCCCTATACCATCAGCTTCCATTCCGCCAGAGTATACAACCTGGAGG  273

seq1  ATTGACTAGACACTCTGTCAGATCAGAAGGTAGTGCCTAGCATGGGTACA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGACTAGACACTCTGTCAGATCAGAAGGTAGTGCCTAGCATGGGTACA  323

seq1  TAAAAACTGCTTTGTGACTTCATGTTTTCTGTATCTTTACCATTTATTGG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAACTGCTTTGTGACTTCATGTTTTCTGTATCTTTACCATTTATTGG  373

seq1  CATGGTCCTTCTTTTCAATTTTTGACCTTATAAAGAATCTCATTTTAAAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGTCCTTCTTTTCAATTTTTGACCTTATAAAGAATCTCATTTTAAAA  423

seq1  ATTTGAACAATAATGTCTTATCATATTATTTACCATATTTCTTCTTAGAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGAACAATAATGTCTTATCATATTATTTACCATATTTCTTCTTAGAA  473

seq1  AAGAACACACAGATGTTTCTGTTTTTATTATATTATCCCAGACCTAAAAC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACACACAGATGTTTCTGTTTTTATTATATTATCCCAGACCTAAAAC  523

seq1  TTTTAATCATAATATGTTTTCATTTTAGGAGATTAAAATTTTAGAATATA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAATCATAATATGTTTTCATTTTAGGAGATTAAAATTTTAGAATATA  573

seq1  TATATATGTATATATATATATATATTACATATACATATATTATATATTTT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATGTATATATATATATATATTACATATACATATATTATATATTTT  623

seq1  CAAATCAGGAGTCTTATCTGTAGGTATAGTCATGTGTCTGAAACCATCAT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATCAGGAGTCTTATCTGTAGGTATAGTCATGTGTCTGAAACCATCAT  673

seq1  TAAAAGAGTTATATAAACTTATTTTCTAATGCCACATATTTGTAGTTGGT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGAGTTATATAAACTTATTTTCTAATGCCACATATTTGTAGTTGGT  723

seq1  GTTTATGCTACAGGTTGGTCCCAATACAAGTTATATTTTCCATGAACTTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTATGCTACAGGTTGGTCCCAATACAAGTTATATTTTCCATGAACTTT  773

seq1  TATAAGTAGAATCAAATAGTAGCTATGTCCAAGTCTAAAAACATATAAAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAGTAGAATCAAATAGTAGCTATGTCCAAGTCTAAAAACATATAAAA  823

seq1  TATAAAATATATTTGGGTGATAGTAGGTTTCCTTTCTTTTAGAAGCATAC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAAATATATTTGGGTGATAGTAGGTTTCCTTTCTTTTAGAAGCATAC  873

seq1  TTCAGAATAGAATTAGGTCATTATATAATGTTTTAACAAAGTAACGATTA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGAATAGAATTAGGTCATTATATAATGTTTTAACAAAGTAACGATTA  923

seq1  TTTCCCCCATAAATAGCAGTTTCTTCTGTATCCTACAAGAAATTATGTGA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCCCATAAATAGCAGTTTCTTCTGTATCCTACAAGAAATTATGTGA  973

seq1  AAATTCAAATTTCTGTTATTACCAGCAGTCATTGTCATGGGAAAGGGGTC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCAAATTTCTGTTATTACCAGCAGTCATTGTCATGGGAAAGGGGTC  1023

seq1  AGTATTGGGGGCTTTTATGGCTTTGTGGTTTGTTCCAATTTTTACTGTCT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATTGGGGGCTTTTATGGCTTTGTGGTTTGTTCCAATTTTTACTGTCT  1073

seq1  GGTCCTTCATGGTTGTGCAGTTGTATGATGTTGAGAATGTCTTTGCCTGG  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCTTCATGGTTGTGCAGTTGTATGATGTTGAGAATGTCTTTGCCTGG  1123

seq1  CAGTGAGTTTGACATACACTATACAACACAAGTGTAAGCACTGGAGGCTT  1199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGAGTTTGACATACACTATACAACACAAGTGTAAGCACTGGAGGCTT  1173

seq1  ATTTGGGTTTAGAATTC  1216
      |||||||||||||||||
seq2  ATTTGGGTTTAGAATTC  1190