BAC Information

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BAC

Clone NameB6Ng01-005P06
Chromosome9 (Build37)
Map Location 88,735,926 - 88,831,842
singlet/doubletdoublet
Overlap geneEG666731, LOC100039741
Upstream geneLOC100039580, LOC384962, EG272633, Nt5e, Snx14, LOC100039601, Syncrip, 2810026P18Rik, 4930422I07Rik, EG547109, LOC100039707, LOC100039721, Bcl2a1d, LOC100039674
Downstream geneBcl2a1a, LOC100039689, EG666747, LOC100039714, 4930579C12Rik, Bcl2a1b, Mthfs, AF529169, Tmed3, B230218L05Rik, Rasgrf1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-005P06.bB6Ng01-005P06.g
ACCDH842947DH842948
length1,1061,132
definitionDH842947|Mus musculus domesticus DNA, BAC clone: B6Ng01-005P06, 5' end.DH842948|Mus musculus domesticus DNA, BAC clone: B6Ng01-005P06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(88,735,926 - 88,737,000)(88,830,699 - 88,831,842)
sequence
gaattcttacacgcgttctcatgaccggccaggaagaacacaacaaacca
gaatcttctgcggcaaaactttattgcttacatcttcaggagcaagagtg
caagagagcaagagctctattgcttacatctttaggagccagagcgcaag
agctttattgcttacatctttaggagcaagaagcaagagccagagcaaga
gagcaaaagcgcaagagcgcaagcaagaaagcaagaaaaagaacaagaac
aagaaaacaagagagcaagaaagcaagaaaagaacaagagagagaaaaag
cacaagaacaagaaagcaagagaagagagagaaaaagaatggcaaaaccc
cgtcccttttaaggagaattatcctccgcctaggacgtattactccctga
ttggctgcagcccatcggcccagttgtcatcacgagaaaggcagaacaca
tggcgggaaaactgcccctgcacgtgtgcagattatgtttactacttaga
acacagctgtcagcgccatcttataatggcaaatgtgagggcggctcctc
acagggaatcccaaccagatgagaattatccagccagtcgtcaactatgc
tacatcactttacttgagcccagagtggttgtattctgtaattctatggt
ttgaaaatctacagttccatagttattaaaaataaaaaaaacactgatcc
ttctaccctctctaaagtaattgtgttcagtgctagggtctgatcatcag
gtgactcattatttaaggatgatttatttatttatttatttatttattac
aggaggaacttctaaagcacatggactcattatggcagagctcaaaatcc
agcagaattatgtagaaaaagagaggagaatgaccttgtggtggttggtg
ggtatgagacttcagcccaaactggtacattctttgagccagagacattc
attgagagtgatccaagctcttctctccagtctgcttcactgcagcatgt
tagtgaacagcacttctatcagaaatgcatccttactcaagcttaatatg
aatattctaaactactcgagcatttctaagcatgaatgttcttggaaatt
agacaa
gaattcactttgctgaccaggctggcatcgaactcagaaatatgccagcc
tctgcctcccgagtgcaaggattaaaggcatgcgccaccacaccaggctt
tagaattatgttttgtcatatattatattttagtctacaaagtattttga
atttaaactttagaatttaatgtgtttgtatatacatatgtgtctgtata
tgtttgtatttcctccctcaagattgtgcttcatagacattcctatatat
aaatactgtaacactatgtcacaaacatactaagaaataactaaggttct
cagtatttaaattataaacctcagaaaattggagtggctttacagtggtg
ggataaattatgatataaatcttccactataatgtgtgcctattttcatt
tttaacaaacattcccggtcattttcttactaggtatactttattcatta
aaatgtaggtatgtctcgtccatatatgtgaaggtttagagtgtgtacct
actccatattgaaaatttaaatacaaatctatgatttattctgaattgta
aatatcccaaataggtaacattatgacccacatctatttggagttaggta
tcacccaataagttgattattttgttctgaatgactgatcgctatttcaa
caaatgaagtagagaatcagatgaattaggctggtgaactaattagagag
tcagtaactatttacagaaatccgtgagcatagtgttcgtatatggtgaa
caaaaagaattgtatgcagaggtaatcgttctgtgcgtgtagaaacatgg
tgctgaaaagatgtattaacccttcctgctgttttcacgtgtgatgtggt
ttatttatcctgacactccttcagagagctataacttttcttgatgaatt
gggcaaacctaaatataaagaggttcatatttgtgaaaagctaattaacc
aagatggtaggttacagtgtacacgtcagatgtctcaagtctgtagaagt
ctagcattatctactttatgactcaatcatgtcactttattcacaggaca
gatactgctacatcactgtttcacattcagctagtcattgcagagtacag
cactctcgccagctcaaagatgcctaggactg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_88735926_88737000
seq2: B6Ng01-005P06.b_105_1154

seq1  TCTGCGGCAAAACTTTATTGCTTACATCTTCAGGAGCAAGAGTGCAAGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCGGCAAAACTTTATTGCTTACATCTTCAGGAGCAAGAGTGCAAGAG  50

seq1  AGCAAGAGCTCTATTGCTTACATCTTTAGGAGCCAGAGCGCAAGAGCTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGAGCTCTATTGCTTACATCTTTAGGAGCCAGAGCGCAAGAGCTTT  100

seq1  ATTGCTTACATCTTTAGGAGCAAGAAGCAAGAGCCAGAGCAAGAGAGCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCTTACATCTTTAGGAGCAAGAAGCAAGAGCCAGAGCAAGAGAGCAA  150

seq1  AAGCGCAAGAGCGCAAGCAAGAAAGCAAGAAAAAGAACAAGAACAAGAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCGCAAGAGCGCAAGCAAGAAAGCAAGAAAAAGAACAAGAACAAGAAA  200

seq1  ACAAGAGAGCAAGAAAGCAAGAAAAGAACAAGAGAGAGAAAAAGCACAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGAGAGCAAGAAAGCAAGAAAAGAACAAGAGAGAGAAAAAGCACAAG  250

seq1  AACAAGAAAGCAAGAGAAGAGAGAGAAAAAGAATGGCAAAACCCCGTCCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAGAAAGCAAGAGAAGAGAGAGAAAAAGAATGGCAAAACCCCGTCCC  300

seq1  TTTTAAGGAGAATTATCCTCCGCCTAGGACGTATTACTCCCTGATTGGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAGGAGAATTATCCTCCGCCTAGGACGTATTACTCCCTGATTGGCT  350

seq1  GCAGCCCATCGGCCCAGTTGTCATCACGAGAAAGGCAGAACACATGGCGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCCCATCGGCCCAGTTGTCATCACGAGAAAGGCAGAACACATGGCGG  400

seq1  GAAAACTGCCCCTGCACGTGTGCAGATTATGTTTACTACTTAGAACACAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACTGCCCCTGCACGTGTGCAGATTATGTTTACTACTTAGAACACAG  450

seq1  CTGTCAGCGCCATCTTATAATGGCAAATGTGAGGGCGGCTCCTCACAGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCAGCGCCATCTTATAATGGCAAATGTGAGGGCGGCTCCTCACAGGG  500

seq1  AATCCCAACCAGATGAGAATTATCCAGCCAGTCGTCAACTATGCTACATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCCAACCAGATGAGAATTATCCAGCCAGTCGTCAACTATGCTACATC  550

seq1  ACTTTACTTGAGCCCAGAGTGGTTGTATTCTGTAATTCTATGGTTTGAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTACTTGAGCCCAGAGTGGTTGTATTCTGTAATTCTATGGTTTGAAA  600

seq1  ATCTACAGTTCCATAGTTATTAAAAATAAAAAAAACACTGATCCTTCTAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTACAGTTCCATAGTTATTAAAAATAAAAAAAACACTGATCCTTCTAC  650

seq1  CCTCTCTAAAGTAATTGTGTTCAGTGCTAGGGTCTGATCATCAGGTGACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCTAAAGTAATTGTGTTCAGTGCTAGGGTCTGATCATCAGGTGACT  700

seq1  CATTATTTAAGGATGATTTATTTATTTATTTATTTATTTATTACAGGAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTATTTAAGGATGATTTATTTATTTATTTATTTATTTATTACAGGAGG  750

seq1  AACTTCTAAAGCACATGGACTCATTATGGCAGAGGCTCAAAATCCAGCAG  800
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  AACTTCTAAAGCACATGGACTCATTATGGCAGA-GCTCAAAATCCAGCAG  799

seq1  AATTATGTAGAAAAAGAGAGGAGAATGACCTTGTGGTGGTTGGTGGGTAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATGTAGAAAAAGAGAGGAGAATGACCTTGTGGTGGTTGGTGGGTAT  849

seq1  GAGACTTCAGCCCAAACTGGTACATTCTTTGAGGCCAGAGACATTCATTG  900
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  GAGACTTCAGCCCAAACTGGTACATTCTTTGA-GCCAGAGACATTCATTG  898

seq1  AGGAGTGATCCAAGCCCTTCTCCTCCAGTCTGGCCTTTCACTGCAGGCAT  950
      | ||||||||||||| ||||| ||||||||||    ||||||||| ||||
seq2  A-GAGTGATCCAAGCTCTTCT-CTCCAGTCTG---CTTCACTGCA-GCAT  942

seq1  GTTAGTGAAACAGCACCTTCCTATCCAAGAAAATGCACCCTACCTCAAGC  1000
      ||||||| ||||||||  | |||||  || ||||||| |||  |||||||
seq2  GTTAGTG-AACAGCAC--TTCTATC--AG-AAATGCATCCTTACTCAAGC  986

seq1  TTTAAATATTGATATTTCTTAAAACCACTCAGAGCATTTCTTAAGCATAG  1050
      ||  |||||  ||| ||||  |||| |||| ||||||||| ||||||| |
seq2  TT--AATATGAATA-TTCT--AAACTACTC-GAGCATTTC-TAAGCAT-G  1028

seq1  AATGTTCTTGAAATATTTTAGACAA  1075
      |||||||||| ||    ||||||||
seq2  AATGTTCTTGGAA---ATTAGACAA  1050

seq1: chr9_88830699_88831842
seq2: B6Ng01-005P06.g_66_1197 (reverse)

seq1  CAGTCCTAAGCATCTGTGAGCTGGCGAGAAGTGCTGGTACTTCCTTGCAA  50
      |||||||| |||||| |||||||||||| |||||| |||||    |||||
seq2  CAGTCCTAGGCATCTTTGAGCTGGCGAG-AGTGCT-GTACT---CTGCAA  45

seq1  TGACTAGGCTGAAATGTG--ACAGTGATGTAGCAGTATCTGTCCTGTG-A  97
      |||||| |||| ||||||  |||||||||||||||||||||||||||| |
seq2  TGACTA-GCTG-AATGTGAAACAGTGATGTAGCAGTATCTGTCCTGTGAA  93

seq1  TAAAGTGACCATGGATTTGATGTCATAAAGTAGATAATGCCTAGGACTTC  147
      |||||||| ||||   |||| |||||||||||||||||| ||| ||||||
seq2  TAAAGTGA-CATG--ATTGA-GTCATAAAGTAGATAATG-CTA-GACTTC  137

seq1  TACAGACTTGAGACATCCTGACGTGTACACTGGTAACCTACCATCTTGGT  197
      |||||||||||||||| |||||||||||||| ||||||||||||||||||
seq2  TACAGACTTGAGACAT-CTGACGTGTACACT-GTAACCTACCATCTTGGT  185

seq1  TAATTAGCTTTTCACAAATATGAACCTCTTTATATTTAGGTTTTGCCCAA  247
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TAATTAGCTTTTCACAAATATGAACCTCTTTATATTTAGG-TTTGCCCAA  234

seq1  TTCATCAAG-AAAGTTATAGCTCTCTGAAGGAGTGTCAGGATAAATAAAC  296
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TTCATCAAGAAAAGTTATAGCTCTCTGAAGGAGTGTCAGGATAAATAAAC  284

seq1  CACATCACACGTGAAAACAGCAGGAAGGGTTAATACATCTTTTCAGCACC  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATCACACGTGAAAACAGCAGGAAGGGTTAATACATCTTTTCAGCACC  334

seq1  ATGTTTCTACACGCACAGAACGATTACCTCTGCATACAATTCTTTTTGTT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTCTACACGCACAGAACGATTACCTCTGCATACAATTCTTTTTGTT  384

seq1  CACCATATACGAACACTATGCTCACGGATTTCTGTAAATAGTTACTGACT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCATATACGAACACTATGCTCACGGATTTCTGTAAATAGTTACTGACT  434

seq1  CTCTAATTAGTTCACCAGCCTAATTCATCTGATTCTCTACTTCATTTGTT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAATTAGTTCACCAGCCTAATTCATCTGATTCTCTACTTCATTTGTT  484

seq1  GAAATAGCGATCAGTCATTCAGAACAAAATAATCAACTTATTGGGTGATA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATAGCGATCAGTCATTCAGAACAAAATAATCAACTTATTGGGTGATA  534

seq1  CCTAACTCCAAATAGATGTGGGTCATAATGTTACCTATTTGGGATATTTA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAACTCCAAATAGATGTGGGTCATAATGTTACCTATTTGGGATATTTA  584

seq1  CAATTCAGAATAAATCATAGATTTGTATTTAAATTTTCAATATGGAGTAG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTCAGAATAAATCATAGATTTGTATTTAAATTTTCAATATGGAGTAG  634

seq1  GTACACACTCTAAACCTTCACATATATGGACGAGACATACCTACATTTTA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACACACTCTAAACCTTCACATATATGGACGAGACATACCTACATTTTA  684

seq1  ATGAATAAAGTATACCTAGTAAGAAAATGACCGGGAATGTTTGTTAAAAA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATAAAGTATACCTAGTAAGAAAATGACCGGGAATGTTTGTTAAAAA  734

seq1  TGAAAATAGGCACACATTATAGTGGAAGATTTATATCATAATTTATCCCA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAATAGGCACACATTATAGTGGAAGATTTATATCATAATTTATCCCA  784

seq1  CCACTGTAAAGCCACTCCAATTTTCTGAGGTTTATAATTTAAATACTGAG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTGTAAAGCCACTCCAATTTTCTGAGGTTTATAATTTAAATACTGAG  834

seq1  AACCTTAGTTATTTCTTAGTATGTTTGTGACATAGTGTTACAGTATTTAT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTTAGTTATTTCTTAGTATGTTTGTGACATAGTGTTACAGTATTTAT  884

seq1  ATATAGGAATGTCTATGAAGCACAATCTTGAGGGAGGAAATACAAACATA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAGGAATGTCTATGAAGCACAATCTTGAGGGAGGAAATACAAACATA  934

seq1  TACAGACACATATGTATATACAAACACATTAAATTCTAAAGTTTAAATTC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGACACATATGTATATACAAACACATTAAATTCTAAAGTTTAAATTC  984

seq1  AAAATACTTTGTAGACTAAAATATAATATATGACAAAACATAATTCTAAA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATACTTTGTAGACTAAAATATAATATATGACAAAACATAATTCTAAA  1034

seq1  GCCTGGTGTGGTGGCGCATGCCTTTAATCCTTGCACTCGGGAGGCAGAGG  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGGTGTGGTGGCGCATGCCTTTAATCCTTGCACTCGGGAGGCAGAGG  1084

seq1  CTGGCATATTTCTGAGTTCGATGCCAGCCTGGTCAGCAAAGTGAATTC  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCATATTTCTGAGTTCGATGCCAGCCTGGTCAGCAAAGTGAATTC  1132