BAC Information

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BAC

Clone NameB6Ng01-006C14
Chromosome9 (Build37)
Map Location 38,593,188 - 38,696,807
singlet/doubletdoublet
Overlap geneOlfr922, Olfr923, Olfr924, Olfr26, Olfr925-ps1, Olfr926
Upstream geneOlfr876, Olfr877, Olfr145, EG627852, Olfr878, GA_x5J8B7W60AJ-1667802-1666911, Olfr880-ps1, Olfr881, Olfr882-ps1, Olfr883, Olfr884, Olfr1550-ps1, Olfr885, Olfr886-ps1, Olfr887, Olfr888, Olfr889, Olfr890, Olfr891, Olfr892-ps1, Olfr893, Olfr894, Olfr143, Olfr895, Olfr896-ps1, Olfr897-ps1, Olfr25, Olfr898, Olfr899, Olfr900, Olfr147, Olfr901, Olfr902, Olfr903-ps1, Olfr904, Olfr905, Olfr906, Olfr907, Olfr908, Olfr909, Olfr910, Olfr912, Olfr913, Olfr914, Olfr915, Olfr916, Olfr917, Olfr918, GA_x5J8B7W60AJ-925630-926226, Olfr919, Loh11cr2a, Olfr920, Olfr921
Downstream geneGA_x5J8B7W60AJ-719102-719883, Olfr928-ps1, GA_x5J8B7W60AJ-703922-704828, Olfr930, GA_x5J8B7W60AJ-666029-666595, Olfr1545-ps1, Olfr932-ps1, Olfr933, Olfr934, Olfr935, Olfr146, EG628171, Olfr937, LOC667260, Olfr938, Olfr939-ps1, GA_x5J8B7W60AJ-540286-540740, Olfr941-ps1, Olfr27, Olfr942-ps1, Olfr943, Olfr944, Olfr144, Olfr945, GA_x5J8B7W60AJ-354484-355428, Olfr947-ps1, Olfr948, LOC667312, Olfr949-ps1, Olfr950-ps1, Olfr951, Olfr952, Olfr953-ps1, Olfr954, Olfr955, Olfr956-ps1, Olfr44, Olfr957, Olfr958, Olfr959, AW551984, Olfr148, Olfr960, Olfr961, GA_x5J8B7W60AJ-4787-4010, Olfr963, Olfr964-ps1, Olfr149, Olfr965, Olfr966-ps1, Olfr150, Olfr967, Olfr968, Olfr969, Olfr970, Olfr971, Olfr972
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-006C14.bB6Ng01-006C14.g
ACCDH843100DH843101
length987735
definitionDH843100|Mus musculus domesticus DNA, BAC clone: B6Ng01-006C14, 5' end.DH843101|Mus musculus domesticus DNA, BAC clone: B6Ng01-006C14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(38,593,188 - 38,594,172)(38,696,075 - 38,696,807)
sequence
gaattcacagtcaaagacaactgtattcctgacccactgaacataccagc
cttgagcactctgtgtgagattaaagtcactgtaccagtttttataacca
gtgatctagtaaatttccatcagccctattattactaatacgtagtcaca
atgctttaaaaagttacgtgcaatcctgcagaattagggagaagttgtaa
aaaacaaaacaaaacaaaacataacaaaacaaaaaaactaaactaaacta
aaaaacaaaaaaaaaatgtttttttcaaaactggcagtgtgaagaagaca
ccagcactgaaagtgtcagtcatctgtgatgccaggcaccctccataaac
tcttagtgctactaggctttgggactggctgactacaatctcagatagat
gcattttgctcataggttacacagccaagtacaacttcagctttaaaaat
tcctatacaagctatgtctctgagtctacaagatagtattactaattaaa
ccaaactaacagagaagagaccacttaggtttagtgttaccatagtagtc
ttttataagtgtactaacaactttagcctaatcccaataaagcctgataa
caggcataataattcattaagaagtttactgggggtaccattatacccat
gcctttatgattccatatatatagatatagtgtgtgtgtgtgtgtttagt
tggattgcctcagtaacagctgcctggcaaactgaataaaatggcattca
attttcacagatcttgttgtcatattccatgcagaagaggttgtggccac
acagatgtagggcagcaataacttctttttcaaaacaaattgcacaattg
ttctttgttcttgattctgaaggtgaactagagatgtaaccaccattgga
aagggagtaactatttgttaccattataaaaagcagggatgtatattgga
aggtcaacattggttgcttgtactaagtgggtcactc
gaattcttttagttctataccccatttattagttgggttgttctaggtta
acttcttgagttctttatatgttttgtatagcaggtctctgtcaaatgta
gggttggtgaagatcttttcccaatcccagggttatcattttgtcctact
gaaagtgtcctttgacttacagaaacttttcattgtcatgaagtggaaga
gaaggtggaattgaggtcccagttgtggagttcagaaaaggtagggtgga
gcttttagctgatggggttgcccaaaatggtctataggcagatgattcta
gggtctcatgtggtggttgctgacagctgtaggtgtctggattgtagttc
aatgtatggaattgtaagacgaatcccaaatgattaagagcagatcacac
tgcatctgggcttgctggagacccagacagcaggaatttggagattgggg
aactcccctagttggccctggcaccagtagacctcctgggatgcaggtag
agctgtggccaagtaagtggagtgtagatgtggcagggcagagctcacca
ctactgggttttcccagagcagccagcagaaaattaattgggagtaggag
tcttacctgctggttgcctatagtatttggctatctggggatgtggttaa
aggtctgaaactagaagatggaagtcaaagggatgaggacaaacctcata
actgctgggtttgccagaaatttacagggcctttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_38593188_38594172
seq2: B6Ng01-006C14.b_46_1032

seq1  GAATTCACAGTCAAAGACAACTGTATTCCTGACCCACTGAACATACCAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAGTCAAAGACAACTGTATTCCTGACCCACTGAACATACCAGC  50

seq1  CTTGAGCACTCTGTGTGAGATTAAAGTCACTGTACCAGTTTTTATAACCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAGCACTCTGTGTGAGATTAAAGTCACTGTACCAGTTTTTATAACCA  100

seq1  GTGATCTAGTAAATTTCCATCAGCCCTATTATTACTAATACGTAGTCACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATCTAGTAAATTTCCATCAGCCCTATTATTACTAATACGTAGTCACA  150

seq1  ATGCTTTAAAAAGTTACGTGCAATCCTGCAGAATTAGGGAGAAGTTGTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTTTAAAAAGTTACGTGCAATCCTGCAGAATTAGGGAGAAGTTGTAA  200

seq1  AAAACAAAACAAAACAAAACATAACAAAACAAAAAAACTAAACTAAACTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAAAACAAAACAAAACATAACAAAACAAAAAAACTAAACTAAACTA  250

seq1  AAAAACAAAAAAAAAATGTTTTTTTCAAAACTGGCAGTGTGAAGAAGACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACAAAAAAAAAATGTTTTTTTCAAAACTGGCAGTGTGAAGAAGACA  300

seq1  CCAGCACTGAAAGTGTCAGTCATCTGTGATGCCAGGCACCCTCCATAAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCACTGAAAGTGTCAGTCATCTGTGATGCCAGGCACCCTCCATAAAC  350

seq1  TCTTAGTGCTACTAGGCTTTGGGACTGGCTGACTACAATCTCAGATAGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAGTGCTACTAGGCTTTGGGACTGGCTGACTACAATCTCAGATAGAT  400

seq1  GCATTTTGCTCATAGGTTACACAGCCAAGTACAACTTCAGCTTTAAAAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTTGCTCATAGGTTACACAGCCAAGTACAACTTCAGCTTTAAAAAT  450

seq1  TCCTATACAAGCTATGTCTCTGAGTCTACAAGATAGTATTACTAATTAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTATACAAGCTATGTCTCTGAGTCTACAAGATAGTATTACTAATTAAA  500

seq1  CCAAACTAACAGAGAAGAGACCACTTAGGTTTAGTGTTACCATAGTAGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAACTAACAGAGAAGAGACCACTTAGGTTTAGTGTTACCATAGTAGTC  550

seq1  TTTTATAAGTGTACTAACAACTTTAGCCTAATCCCAATAAAGCCTGATAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATAAGTGTACTAACAACTTTAGCCTAATCCCAATAAAGCCTGATAA  600

seq1  CAGGCATAATAATTCATTAAGAAGTTTACTGGGGGTACCATTATACCCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCATAATAATTCATTAAGAAGTTTACTGGGGGTACCATTATACCCAT  650

seq1  GCCTTTATGATTCCATATATATAGATATAGTGTGTGTGTGTGTGTTTAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTATGATTCCATATATATAGATATAGTGTGTGTGTGTGTGTTTAGT  700

seq1  TGGATTGCCTCAGTAACAGCTGCCTGGCAAACTGAATAAAATGGCATTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATTGCCTCAGTAACAGCTGCCTGGCAAACTGAATAAAATGGCATTCA  750

seq1  ATTTTCACAGATCTTGTTGTCATATTCCATGCAGAAGAGGTTGTGGCCAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCACAGATCTTGTTGTCATATTCCATGCAGAAGAGGTTGTGGCCAC  800

seq1  ACAGATGTAGGGCAGCAATAACTTCATTTTCAAAACAAATTGCACAATTG  850
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  ACAGATGTAGGGCAGCAATAACTTCTTTTTCAAAACAAATTGCACAATTG  850

seq1  TTCTTTGTTCTTGATTCTGAAGGTGAACTAGAGATGTAACCACCATTGGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTGTTCTTGATTCTGAAGGTGAACTAGAGATGTAACCACCATTGGA  900

seq1  AGGGGAGTAACTA-TTGGTACCATTAGAAAAAGCAGGGATGTATATTGGA  949
      | ||||||||||| ||| |||||||| |||||||||||||||||||||||
seq2  AAGGGAGTAACTATTTGTTACCATTATAAAAAGCAGGGATGTATATTGGA  950

seq1  AGGCCAACA-TGGTTGCCTGTACTAGGTGGGTCACTC  985
      ||| ||||| ||||||| ||||||| |||||||||||
seq2  AGGTCAACATTGGTTGCTTGTACTAAGTGGGTCACTC  987

seq1: chr9_38696075_38696807
seq2: B6Ng01-006C14.g_69_803 (reverse)

seq1  AAAAGG-CCTGTATATCTCTGGCAAACCCAGCAGTTATGAGGTTTGTCCT  49
      |||||| |||||| || |||||||||||||||||||||||||||||||||
seq2  AAAAGGCCCTGTAAATTTCTGGCAAACCCAGCAGTTATGAGGTTTGTCCT  50

seq1  CATCCCTTTGACTTCCATCTTCTAGTTTCAGACCTTTAACCACATCCCCA  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCCTTTGACTTCCATCTTCTAGTTTCAGACCTTTAACCACATCCCCA  100

seq1  GATAGCC-AATACTATAGGCAACCAGCAGGTAAGACTCCTACTCCCAATT  148
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGCCAAATACTATAGGCAACCAGCAGGTAAGACTCCTACTCCCAATT  150

seq1  AATTTTCTGCTGGCTGCTCTGGGAAAACCCAGTAGTGGTGAGCTCTGCCC  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTCTGCTGGCTGCTCTGGGAAAACCCAGTAGTGGTGAGCTCTGCCC  200

seq1  TGCCACATCTACACTCCACTTACTTGGCCACAGCTCTACCTGCATCCCAG  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCACATCTACACTCCACTTACTTGGCCACAGCTCTACCTGCATCCCAG  250

seq1  GAGGTCTACTGGTGCCAGGGCCAACTAGGGGAGTTCCCCAATCTCCAAAT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTCTACTGGTGCCAGGGCCAACTAGGGGAGTTCCCCAATCTCCAAAT  300

seq1  TCCTGCTGTCTGGGTCTCCAGCAAGCCCAGATGCAGTGTGATCTGCTCTT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGCTGTCTGGGTCTCCAGCAAGCCCAGATGCAGTGTGATCTGCTCTT  350

seq1  AATCATTTGGGATTCGTCTTACAATTCCATACATTGAACTACAATCCAGA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATTTGGGATTCGTCTTACAATTCCATACATTGAACTACAATCCAGA  400

seq1  CACCTACAGCTGTCAGCAACCACCACATGAGACCCTAGAATCATCTGCCT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTACAGCTGTCAGCAACCACCACATGAGACCCTAGAATCATCTGCCT  450

seq1  ATAGACCATTTTGGGCAACCCCATCAGCTAAAAGCTCCACCCTACCTTTT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGACCATTTTGGGCAACCCCATCAGCTAAAAGCTCCACCCTACCTTTT  500

seq1  CTGAACTCCACAACTGGGACCTCAATTCCACCTTCTCTTCCACTTCATGA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAACTCCACAACTGGGACCTCAATTCCACCTTCTCTTCCACTTCATGA  550

seq1  CAATGAAAAGTTTCTGTAAGTCAAAGGACACTTTCAGTAGGACAAAATGA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGAAAAGTTTCTGTAAGTCAAAGGACACTTTCAGTAGGACAAAATGA  600

seq1  TAACCCTGGGATTGGGAAAAGATCTTCACCAACCCTACATTTGACAGAGA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCCTGGGATTGGGAAAAGATCTTCACCAACCCTACATTTGACAGAGA  650

seq1  CCTGCTATACAAAACATATAAAGAACTCAAGAAGTTAACCTAGAACAACC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCTATACAAAACATATAAAGAACTCAAGAAGTTAACCTAGAACAACC  700

seq1  CAACTAATAAATGGGGTATAGAACTAAAAGAATTC  733
      |||||||||||||||||||||||||||||||||||
seq2  CAACTAATAAATGGGGTATAGAACTAAAAGAATTC  735