BAC Information

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BAC

Clone NameB6Ng01-006F24
Chromosome9 (Build37)
Map Location 107,603,789 - 107,741,704
singlet/doubletdoublet
Overlap geneSema3f, Rbm5, Rbm6
Upstream geneRad54l2, LOC100041128, Vprbp, Armet, Dock3, Mapkapk3, Cish, Hemk1, 6430571L13Rik, Cacna2d2, Tmem115, Cyb561d2, Tusc4, Zmynd10, Rassf1, Tusc2, Hyal2, Hyal1, Nat6, Hyal3, Ifrd2, BY080835, Sema3b, Gnai2, Slc38a3, Gnat1
Downstream geneMon1a, Mst1r, 4921517D21Rik, Camkv, Traip, Ube1l, D330022A01Rik, 6230427J02Rik, 1700021K14Rik, Ihpk1, Gmppb, Rnf123, Amigo3, Mst1, Apeh, Bsn, LOC100042108, Dag1, Nicn1, EG434437, Tcta, Rhoa, Gpx1, Usp4, LOC623859, 1700102P08Rik, Ccdc36, BC048562, Klhdc8b, LOC100042228, Ccdc71, Lamb2, Usp19, Qars, Qrich1, Impdh2, 4733401H18Rik, Dalrd3, Wdr6, 4933406E20Rik, Arih2, ENSMUSG00000074075, Slc25a20, Prkar2a, Ihpk2, Nckipsd, Celsr3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-006F24.bB6Ng01-006F24.g
ACCDH843252DH843253
length7071,083
definitionDH843252|Mus musculus domesticus DNA, BAC clone: B6Ng01-006F24, 5' end.DH843253|Mus musculus domesticus DNA, BAC clone: B6Ng01-006F24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(107,603,789 - 107,604,688)(107,740,617 - 107,741,704)
sequence
gaattcacacagccaccaggggtaggtttggagtttgaccacatccgtat
gatactctctaaatgaaggaggcactcgggccccctagtaatcaggaacc
aggaagccatcttctaagctctggagaatgggaggggtgaaaggtgtgtg
cacacatgcaggttaagcagccaagaacctactttggggtttgctgcctc
ccaagccacagggtaaaagatgcctttaggggctcgggtgagatctctat
cttggcagtttctctttaaattctttacgattacgaagccgtgagggctg
ccagggaacatgatttactcctcgagcatgcaccagctcctcgctcagtg
ccaagggaagccggagccagcagggcggggtgggcggcatgccagagcct
gagacaaggcctgggcttcggaaggcccgaccagtgtgccccatccgaag
cttgagaagggtctgagttacaggcagaggctcctggcctccagctgaac
ctcctgacatcattacacaaagctggcctccatttcctccaaagtcaact
gtcatcccggctcaccctggaacgtccatccctcaggagtttaagagctc
caaacccgctgtaggtgtcaaagccacctgacccctgcccaactttcaga
tgtcaccacggcctcagctcctgaaccacttcttcctcctcctcctcctc
caccacc
gaattctgaatgcaggattcattgtcaggtttcagaatattacttctcta
ggtaaaatatattctgtgactattagaacttttcctgttaactatcagat
taattctgataattgtaaaatttgggaaaaaagaaaattccaggttattt
cattaaggcaatacaatcattttaattttttatattcagttgtattgcat
tcatccattttcagatttttgtataatcacctaatgttgcttgagtcctg
cctcccactcctgcatccatacccctttccttctcactgagtcatcatgg
aggtggggataagacttggctatggcttcatttggtttctgattccaagt
ttctctgagtgtgagaatttactgtggttggtggctgtgcttctgttgtt
taaagtgctgtatttttcatacattatggcccttaaatgcaagccaacct
cttcatctggtgtcaaccaaaggaacactgatctgttgcaacgctggagg
aaaaactggcaatgttggatttacctatattgaaagatggtatgttgttc
ttcaccttgggctctccaagtataattttgacagtgcatggtttttatct
tatatgctgatttttgtctctaacttctgagttagattcagtttgtattt
aattccagtcttttttttttgtataaattttacataattatccagaagga
tatatttatttttaatcttttatatgttacatatttccatattgctacat
aatttttatagcaatcttctataataagaatttctagtttttgtcctttc
agaagaattgtgggagccaatggagtcacttactgagagtgaatactttc
taacttgcttatttagcccagtcaatgattcactatacatattacaatag
gagtaaccattgtggctcatttgttctcagcatgtgggactcatcctgta
atggggctgaaaaatttaaaataagaatatccaatcactcagcatcttct
taaagagtgaaagggtagacctgagaaccactgattgtaatctctgcttc
tcttgaaggctgaactggagaatagcaggttta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_107603789_107604688
seq2: B6Ng01-006F24.b_49_755

seq1  GAATTCACACAGCCACCAGGGGTAGGTTTGGAGTTTGACCACATCCGTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACACAGCCACCAGGGGTAGGTTTGGAGTTTGACCACATCCGTAT  50

seq1  GATACTCTCTAAATGAAGGAGGCACTCGGGCCCCCTAGTAATCAGGAACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACTCTCTAAATGAAGGAGGCACTCGGGCCCCCTAGTAATCAGGAACC  100

seq1  AGGAAGCCATCTTCTAAGCTCTGGAGAATGGGAGGGGTGAAAGGTGTGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGCCATCTTCTAAGCTCTGGAGAATGGGAGGGGTGAAAGGTGTGTG  150

seq1  CACACATGCAGGTTAAGCAGCCAAGAACCTACTTTGGGGTTTGCTGCCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACATGCAGGTTAAGCAGCCAAGAACCTACTTTGGGGTTTGCTGCCTC  200

seq1  CCAAGCCACAGGGTAAAAGATGCCTTTAGGGGCTCGGGTGAGATCTCTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGCCACAGGGTAAAAGATGCCTTTAGGGGCTCGGGTGAGATCTCTAT  250

seq1  CTTGGCAGTTTCTCTTTAAATTCTTTACGATTACGAAGCCGTGAGGGCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGCAGTTTCTCTTTAAATTCTTTACGATTACGAAGCCGTGAGGGCTG  300

seq1  CCAGGGAACATGATTTACTCCTCGAGCATGCACCAGCTCCTCGCTCAGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGAACATGATTTACTCCTCGAGCATGCACCAGCTCCTCGCTCAGTG  350

seq1  CCAAGGGAAGCCGGAGCCAGCAGGGCGGGGTGGGCGGCATGCCAGAGCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGGGAAGCCGGAGCCAGCAGGGCGGGGTGGGCGGCATGCCAGAGCCT  400

seq1  GAGACAAGGCCTGGGCTTCGGAAGGCCCGACCAGTGTGCCCCATCCGAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACAAGGCCTGGGCTTCGGAAGGCCCGACCAGTGTGCCCCATCCGAAG  450

seq1  CTTGAGAAGGGTCTGAGTTACAGGCAGAGGCTCCTGGCCTCCAGCTGAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAGAAGGGTCTGAGTTACAGGCAGAGGCTCCTGGCCTCCAGCTGAAC  500

seq1  CTCCTGACATCATTACACAAAGCTGGCCTCCATTTCCTCCAAAGTCAACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGACATCATTACACAAAGCTGGCCTCCATTTCCTCCAAAGTCAACT  550

seq1  GTCATCCCGGCTCACCCTGGAACGTCCATCCCTCAGGAGTTTAAGAGCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATCCCGGCTCACCCTGGAACGTCCATCCCTCAGGAGTTTAAGAGCTC  600

seq1  CAAACCCGCTGTAGGTGTCAAAGCCACCTGACCCCTGCCCAACTTTCAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACCCGCTGTAGGTGTCAAAGCCACCTGACCCCTGCCCAACTTTCAGA  650

seq1  TGTCACCACGGCCTCAGCTCCTGAACCACTTCTTCCTCCTCCTCCTCCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCACCACGGCCTCAGCTCCTGAACCACTTCTTCCTCCTCCTCCTCCTC  700

seq1  CTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCTTCCTCCTCATTTCTCT  750
      | || ||                                           
seq2  CACCACC-------------------------------------------  707

seq1  ACAATTAGAAGCTACTCAAAGTTTGGAGACTCGGGGAACCCTTAGGGCCA  800
                                                        
seq2  --------------------------------------------------  707

seq1  GGTCGATACTCCAGCTTTCCAGCCCCACCCTTCTCCCTTACACCTCGGCC  850
                                                        
seq2  --------------------------------------------------  707

seq1  TATACTCACCTTCCCCAGCCTCCAAGTGAAGTAGATGACTTGTGACCACC  900
                                                        
seq2  --------------------------------------------------  707

seq1: chr9_107740617_107741704
seq2: B6Ng01-006F24.g_68_1150 (reverse)

seq1  TAAACCTGCTATTCTCCTGCTTCAGCCTTC-AGAGTAGCTAGGATTACAA  49
      ||||||||||||||||| | |||||||||| |||| |||   ||||||||
seq2  TAAACCTGCTATTCTCCAG-TTCAGCCTTCAAGAGAAGCAGAGATTACAA  49

seq1  TCATGTGTCTC-CAGGTCCTAGCCTTTCACTCTTTAAGAAGATGCTAGGT  98
      ||| |||  || ||||| ||| |||||||||||||||||||||||| |  
seq2  TCA-GTGGTTCTCAGGT-CTACCCTTTCACTCTTTAAGAAGATGCT-GAG  96

seq1  TGATTTTGATAATCTTAATTTTAAATTTATTCAGCCCCAATACAGGATGA  148
      ||| || |||| |||| ||||||||||| |||||||||| ||||||||||
seq2  TGA-TTGGATATTCTT-ATTTTAAATTT-TTCAGCCCCATTACAGGATGA  143

seq1  GTCCCACATGCCTGAGAACAAATGAG-CACAATGGTTACTCCTATTGTAA  197
      |||||||||| ||||||||||||||| |||||||||||||||||||||||
seq2  GTCCCACATG-CTGAGAACAAATGAGCCACAATGGTTACTCCTATTGTAA  192

seq1  TATGTATAGTGAATCATTGACTGGGCTAAATAAGCAAGTTAGAAAGTATT  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTATAGTGAATCATTGACTGGGCTAAATAAGCAAGTTAGAAAGTATT  242

seq1  CACTCTCAGTAAGTGACTCCATTGGCTCCCACAATTCTTCTGAAAGGACA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCTCAGTAAGTGACTCCATTGGCTCCCACAATTCTTCTGAAAGGACA  292

seq1  AAAACTAGAAATTCTTATTATAGAAGATTGCTATAAAAATTATGTAGCAA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTAGAAATTCTTATTATAGAAGATTGCTATAAAAATTATGTAGCAA  342

seq1  TATGGAAATATGTAACATATAAAAGATTAAAAATAAATATATCCTTCTGG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGAAATATGTAACATATAAAAGATTAAAAATAAATATATCCTTCTGG  392

seq1  ATAATTATGTAAAATTTATACAAAAAAAAAAGACTGGAATTAAATACAAA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTATGTAAAATTTATACAAAAAAAAAAGACTGGAATTAAATACAAA  442

seq1  CTGAATCTAACTCAGAAGTTAGAGACAAAAATCAGCATATAAGATAAAAA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAATCTAACTCAGAAGTTAGAGACAAAAATCAGCATATAAGATAAAAA  492

seq1  CCATGCACTGTCAAAATTATACTTGGAGAGCCCAAGGTGAAGAACAACAT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGCACTGTCAAAATTATACTTGGAGAGCCCAAGGTGAAGAACAACAT  542

seq1  ACCATCTTTCAATATAGGTAAATCCAACATTGCCAGTTTTTCCTCCAGCG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATCTTTCAATATAGGTAAATCCAACATTGCCAGTTTTTCCTCCAGCG  592

seq1  TTGCAACAGATCAGTGTTCCTTTGGTTGACACCAGATGAAGAGGTTGGCT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAACAGATCAGTGTTCCTTTGGTTGACACCAGATGAAGAGGTTGGCT  642

seq1  TGCATTTAAGGGCCATAATGTATGAAAAATACAGCACTTTAAACAACAGA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTTAAGGGCCATAATGTATGAAAAATACAGCACTTTAAACAACAGA  692

seq1  AGCACAGCCACCAACCACAGTAAATTCTCACACTCAGAGAAACTTGGAAT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACAGCCACCAACCACAGTAAATTCTCACACTCAGAGAAACTTGGAAT  742

seq1  CAGAAACCAAATGAAGCCATAGCCAAGTCTTATCCCCACCTCCATGATGA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAACCAAATGAAGCCATAGCCAAGTCTTATCCCCACCTCCATGATGA  792

seq1  CTCAGTGAGAAGGAAAGGGGTATGGATGCAGGAGTGGGAGGCAGGACTCA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTGAGAAGGAAAGGGGTATGGATGCAGGAGTGGGAGGCAGGACTCA  842

seq1  AGCAACATTAGGTGATTATACAAAAATCTGAAAATGGATGAATGCAATAC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAACATTAGGTGATTATACAAAAATCTGAAAATGGATGAATGCAATAC  892

seq1  AACTGAATATAAAAAATTAAAATGATTGTATTGCCTTAATGAAATAACCT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGAATATAAAAAATTAAAATGATTGTATTGCCTTAATGAAATAACCT  942

seq1  GGAATTTTCTTTTTTCCCAAATTTTACAATTATCAGAATTAATCTGATAG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATTTTCTTTTTTCCCAAATTTTACAATTATCAGAATTAATCTGATAG  992

seq1  TTAACAGGAAAAGTTCTAATAGTCACAGAATATATTTTACCTAGAGAAGT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACAGGAAAAGTTCTAATAGTCACAGAATATATTTTACCTAGAGAAGT  1042

seq1  AATATTCTGAAACCTGACAATGAATCCTGCATTCAGAATTC  1088
      |||||||||||||||||||||||||||||||||||||||||
seq2  AATATTCTGAAACCTGACAATGAATCCTGCATTCAGAATTC  1083