BAC Information

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BAC

Clone NameB6Ng01-007J18
Chromosome9 (Build37)
Map Location 89,150,946 - 89,152,118
singlet/doubletsinglet
Overlap genenone
Upstream geneEG272633, Nt5e, Snx14, LOC100039601, Syncrip, 2810026P18Rik, 4930422I07Rik, EG547109, LOC100039707, LOC100039721, Bcl2a1d, LOC100039674, EG666731, LOC100039741, Bcl2a1a, LOC100039689, EG666747, LOC100039714, 4930579C12Rik, Bcl2a1b, Mthfs
Downstream geneAF529169, Tmed3, B230218L05Rik, Rasgrf1, Ctsh, Morf4l1, LOC621414, Adamts7, Tbc1d2b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-007J18.bB6Ng01-007J18.g
ACCDH844127DH844128
length1,167860
definitionDH844127|Mus musculus domesticus DNA, BAC clone: B6Ng01-007J18, 5' end.DH844128|Mus musculus domesticus DNA, BAC clone: B6Ng01-007J18, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccttgactcgtcaacacatgaactcagactgacccattctagggt
ttccaagatagctactcatagcttagctaagattctttctccattagaga
gccttcccaataaccgcatgtagactgcttggtcatcttcctcccagagg
aagaaaatctgtcatctcaaatatgacagatgttgcaaaagatgacttcc
tgtggtaacaaagtctcccctatccatgccacaagtatatccccaaaagg
tacaattctaaggctaaggtagtgtagttctaggatatcagtcttgtcca
tccatctcaagaattagtcttagacatggacacctgttgggagctattaa
gacaactcttgatctctaaattgggcctctccccacgagaagaaaaaggg
gtcaaaagcgggccaccgacacatggattccaagaaccacgggatggtcc
agccctaggtcatcaccaatgtcctgaccacatgctgataccaccaagtt
ccagcttccccgtgtagctgcctaaagaaagaatttctattgccccccct
cccataagtacttctccttttgcttgtgttgccctacccctcccactgat
aagtatctgtgcttccccttttgcttgtgcatttaaacctcgggcctgac
taatacatttgggggctttgatgcattccagaacggtttccatgtcgtta
ttcgcacaaggccctcgtccccctctaccccccatttggttcttaggagg
aggtccccttgagaccctcgaataactggacctgctggacgggtcagaca
cccctactaacaaacaacaatttcactctttttctaggaatggcagatac
tgtcatttctggatccccctagtttggactcagagctgaaccacttatgg
ggttatggagtcttatggagtccagaagttggacttttgatatgtaaaag
acacacctactgccccttaacttgatgtttattgcacctagaaaatctat
tcttatatgctcatgaaagaacgtgaattgctttggggttcttgccacca
aatatgacacgctcaatcatctagtagcttacctgtcaaacctctgacct
catgctcaattgtgccaatgtatttagaaactggacttcagtcacttgct
taagtagaatctagcta
gaattcagtaagaaggttacctattcagtaacattcaaatttacctctag
tagagacagtgaaaagaatcaggtagtacaatttacttgaataagagcta
gaaagctcagggctagtctacatagtaattacttggaacaatagccgagt
caaacccatacacaggaatgaattcacactggcctaggaaataggtgggt
tgtggtagtattattcctgaaagggttagtagaaagaaagtcccctggtg
tgggttttttcactaggcccagaggaatagcataattaggcatttactaa
agaacccctggtggtgggtttaacaatagactagcattgcatcagagcat
tcacctggctcctgtgtttagctgatcttaattaagagttgttcctattc
tcagtggtaaccacagcctggctccagccatctttttatgtatgcatttt
ctttgttttgtgttgatgtaccttggctgatgtatctgcctagttttctt
gtttttcttctgtattaaaagtatggtgtttgcttggaaaaaatacattc
agatagacactctctctgtgtccgtgtctgtttgtcatccgcaccaactc
cttgcttgtccatatctggaacccctgatttcttccagggattgagggaa
gccgactgaggctggcccctggcagacaaaacccttagctaatcgaacta
aaaagctaagagacattatctaaattaacagaatcagaaatgaaaagagg
ggacataacaacagatagtgagggaatccagagaatcattagttcttact
tcaaaggtctgactccacaaaattgggatatctaaaggaaatggattatt
ttcttactag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_89150946_89152118
seq2: B6Ng01-007J18.b_48_1214 (reverse)

seq1  TAGCTTAGATTCTTACTTAAGCAAGTGACTGAAGCCCAAGTTCT-AATAC  49
      |||| ||||||| ||||||||||||||||||||| |||  |||| |||||
seq2  TAGC-TAGATTC-TACTTAAGCAAGTGACTGAAGTCCAGTTTCTAAATAC  48

seq1  ATTGGCACCAAATTGAGCCACTGA-GTCAGAGGTTTTTGACAGGTAAGCT  98
      ||||||||  ||||||||   ||| ||||||||  |||||||||||||||
seq2  ATTGGCAC--AATTGAGC--ATGAGGTCAGAGG--TTTGACAGGTAAGCT  92

seq1  ACTAGATGAATGAGCCGTGTCAATATTTG--TGCAAGAACCCCAAAGCAA  146
      ||||||||| |||| |||||| |||||||   ||||||||||||||||||
seq2  ACTAGATGATTGAG-CGTGTC-ATATTTGGTGGCAAGAACCCCAAAGCAA  140

seq1  TTCCCCCTTCTTTCATGAGCATATA--GATAGATTTTTCTTAGGTGCAAT  194
      || | | ||||||||||||||||||   |||||||||   ||||||||||
seq2  TT-CACGTTCTTTCATGAGCATATAAGAATAGATTTT--CTAGGTGCAAT  187

seq1  -AACATCAAGTT-AGGGGCAGTAGGTGTGTCTTTTTACATATCAAAAGTC  242
       ||||||||||| |||||||||||||||||| ||||||||||||||||||
seq2  AAACATCAAGTTAAGGGGCAGTAGGTGTGTC-TTTTACATATCAAAAGTC  236

seq1  CAACTTCTGGACTCCATAAGACTCCATAACCCCATAAGTGGTTCAGCTCT  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTTCTGGACTCCATAAGACTCCATAACCCCATAAGTGGTTCAGCTCT  286

seq1  GAGTCCAAACTAGGGGGATCCAGAAATGACAGTATCCTGCCATTCCTAG-  341
      ||||||||||||||||||||||||||||||||||| ||||||||||||| 
seq2  GAGTCCAAACTAGGGGGATCCAGAAATGACAGTAT-CTGCCATTCCTAGA  335

seq1  AAAAGAGTGAAATTGTTGTTTGTTAGTAGGGGTGTCTGACCCGTCCAGCA  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAGTGAAATTGTTGTTTGTTAGTAGGGGTGTCTGACCCGTCCAGCA  385

seq1  GGTCCAGTTATTCGAGGGTCTCAAGGGGACCTCCTCCTAAGAACCAAATG  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCAGTTATTCGAGGGTCTCAAGGGGACCTCCTCCTAAGAACCAAATG  435

seq1  GGGGGTAGAGGGGGACGAGGGCCTTGTGCGAATAACGACATGGAAACCGT  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGTAGAGGGGGACGAGGGCCTTGTGCGAATAACGACATGGAAACCGT  485

seq1  TCTGGAATGCATCAAAGCCCCCAAATGTATTAGTCAGGCCCGAGGTTTAA  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGAATGCATCAAAGCCCCCAAATGTATTAGTCAGGCCCGAGGTTTAA  535

seq1  ATGCACAAGCAAAAGGGGAAGCACAGATACTTATCAGTGGGAGGGGTAGG  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCACAAGCAAAAGGGGAAGCACAGATACTTATCAGTGGGAGGGGTAGG  585

seq1  GCAACACAAGCAAAAGGAGAAGTACTTATGGGAGGGGGGGCAATAGAAAT  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACACAAGCAAAAGGAGAAGTACTTATGGGAGGGGGGGCAATAGAAAT  635

seq1  TCTTTCTTTAGGCAGCTACACGGGGAAGCTGGAACTTGGTGGTATCAGCA  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTTTAGGCAGCTACACGGGGAAGCTGGAACTTGGTGGTATCAGCA  685

seq1  TGTGGTCAGGACATTGGTGATGACCTAGGGCTGGACCATCCCGTGGTTCT  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGTCAGGACATTGGTGATGACCTAGGGCTGGACCATCCCGTGGTTCT  735

seq1  TGGAATCCATGTGTCGGTGGCCCGCTTTTGACCCCTTTTTCTTCTCGTGG  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAATCCATGTGTCGGTGGCCCGCTTTTGACCCCTTTTTCTTCTCGTGG  785

seq1  GGAGAGGCCCAATTTAGAGATCAAGAGTTGTCTTAATAGCTCCCAACAGG  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGGCCCAATTTAGAGATCAAGAGTTGTCTTAATAGCTCCCAACAGG  835

seq1  TGTCCATGTCTAAGACTAATTCTTGAGATGGATGGACAAGACTGATATCC  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCATGTCTAAGACTAATTCTTGAGATGGATGGACAAGACTGATATCC  885

seq1  TAGAACTACACTACCTTAGCCTTAGAATTGTACCTTTTGGGGATATACTT  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAACTACACTACCTTAGCCTTAGAATTGTACCTTTTGGGGATATACTT  935

seq1  GTGGCATGGATAGGGGAGACTTTGTTACCACAGGAAGTCATCTTTTGCAA  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCATGGATAGGGGAGACTTTGTTACCACAGGAAGTCATCTTTTGCAA  985

seq1  CATCTGTCATATTTGAGATGACAGATTTTCTTCCTCTGGGAGGAAGATGA  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGTCATATTTGAGATGACAGATTTTCTTCCTCTGGGAGGAAGATGA  1035

seq1  CCAAGCAGTCTACATGCGGTTATTGGGAAGGCTCTCTAATGGAGAAAGAA  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGCAGTCTACATGCGGTTATTGGGAAGGCTCTCTAATGGAGAAAGAA  1085

seq1  TCTTAGCTAAGCTATGAGTAGCTATCTTGGAAACCCTAGAATGGGTCAGT  1141
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAGCTAAGCTATGAGTAGCTATCTTGGAAACCCTAGAATGGGTCAGT  1135

seq1  CTGAGTTCATGTGTTGACGAGTCAAGGAATTC  1173
      ||||||||||||||||||||||||||||||||
seq2  CTGAGTTCATGTGTTGACGAGTCAAGGAATTC  1167