BAC Information

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BAC

Clone NameB6Ng01-008A11
Chromosome9 (Build37)
Map Location 113,349,962 - 113,481,148
singlet/doubletdoublet
Overlap geneLOC100043802, LOC636680
Upstream geneLOC100043800, EG622110, LOC100039391, LOC100043801
Downstream genePdcd6ip, Clasp2, Ubp1, Fbxl2, Susd5, EG665719, 4921528I07Rik, Bcl2a1c, 4930520O04Rik, Crtap, Glb1, Ccr4, Trim71
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-008A11.bB6Ng01-008A11.g
ACCDH844425DH844426
length818761
definitionDH844425|Mus musculus domesticus DNA, BAC clone: B6Ng01-008A11, 5' end.DH844426|Mus musculus domesticus DNA, BAC clone: B6Ng01-008A11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(113,349,962 - 113,350,780)(113,480,403 - 113,481,148)
sequence
gaattccaagcagaccaccatactggccttttttgtggacactacaggcc
agaattctggtcctcctgtttgtgataccagtgctctatctgctttaact
tcccagtccctgaaactttttttatagtgagtttgaaactcgtggacatc
tgtgactgcctgggtgacttgagtcactctctcctgtgcatagatgatgg
tgcttgccttggacagcagccagagagcacagctgggaggagggaggtgg
atgctgggatatgtgtggacaaactgcacacaggtgagattgttggctgc
tctttcgaagcatggtctcctggatgtaaagatgtctttgaactcactat
gtcactaaggatggctttgaacttccaatcttcccacctccatctctcaa
gtgctggcattacaggtatgcacccccacagtgcttgggaaggacccccc
cgggcataatgcaagccacctccatcactctcagggttttctttccacac
taacctgaactgtaacaatagtgaccacagcagcaactaaaatccaaggc
gctcccctcactgagcaccttatattgtgcccttaattttaagatgctgt
ctggcttaacaaagttcctaagagttggagatgaggctacagaagttcaa
gtcaagaaatataagtcacaacgacagctttgacggcaaaatacatccca
atttaacattgttatcatgatataaaatcaggaacaagtgcctgacgaat
ggctggggggaggcaactctcagcctgagatgaccaacctttccttattt
gtggagatgtgctgaatt
gaattcctccggactggagtaacagagggttgtgagccatcatgcgggtg
ctgggatgtgaacaagagtcctctggaagagtagccagtgctcttaatgg
ctaagccattctccagcttcctcaatacattttcaaagatttatctgagg
gcctgagtttggatccccattacctatataataaaagctgtgtgatggtg
tgtgcgtgctgttccagaactgaagagggaggcacgggaggtccctgggg
ctccctggctgtccagtctagccaaatcaggaagcttccagacagggaga
gtccccctttcatgaaataaggtggaaaaccattgagaaggataacagac
gttaacttctggcctctgtatgcatctgcacactcatgcatatatataaa
catgtacacatgcatgtctgcctacaacgctttaagcatcattttagctt
ttgtcacgtgcagaggatgaattctaatcaaagaacttggttgtagagac
cctaagccatactagactttctgaagagggaaatgcctgtgtaatgatgg
gctgtaataactcgagcctcattggggttagtttgtaagctgggcatatg
gatactcctacactcactgttgttggcttgaagtaagacattgaaaatta
ttttagatgtgttgtgctaccaaccagctaagttagccatgtctcttttc
ctttcttctcatgagtgtcagagtctgagtgtgtgtctgagagtaagtgt
gtgtgtatgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_113349962_113350780
seq2: B6Ng01-008A11.b_30_847

seq1  GAATTCCAAGCAGACCACCATACTGGCTTTTTATGTGGACACTACAGGCC  50
      ||||||||||||||||||||||||||| |||| |||||||||||||||||
seq2  GAATTCCAAGCAGACCACCATACTGGCCTTTTTTGTGGACACTACAGGCC  50

seq1  AGAATTCTGGTCCTCCTGTTTGTGAGACCAGTGCTCTATCTGCTTTATCT  100
      ||||||||||||||||||||||||| ||||||||||||||||||||| ||
seq2  AGAATTCTGGTCCTCCTGTTTGTGATACCAGTGCTCTATCTGCTTTAACT  100

seq1  TCCCAGTCCCTGAAACTTTTTTTATAGTGAGTTTGAAACTCG-AGACATC  149
      ||||||||||||||||||||||||||||||||||||||||||  ||||||
seq2  TCCCAGTCCCTGAAACTTTTTTTATAGTGAGTTTGAAACTCGTGGACATC  150

seq1  TGTGACTGCCTGGGTGACTTGAGTCACTCTCTCCTGTGCAGAGATGATGG  199
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TGTGACTGCCTGGGTGACTTGAGTCACTCTCTCCTGTGCATAGATGATGG  200

seq1  TGCTTGCCTTGGACAGCAGCCAGAGAGCACAGCTGGGAGGAGGGAGGTGG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTGCCTTGGACAGCAGCCAGAGAGCACAGCTGGGAGGAGGGAGGTGG  250

seq1  ATGCTGGGATATGTGTGGACAAGCTGCACACAGGTGAGATTGTTTGCTGC  299
      |||||||||||||||||||||| ||||||||||||||||||||| |||||
seq2  ATGCTGGGATATGTGTGGACAAACTGCACACAGGTGAGATTGTTGGCTGC  300

seq1  TCTTTTGAGGCAGGGTCTCCTGTATGTAAGGCTGTCTTTGAACTCACTAT  349
      ||||| || ||| ||||||||| |||||| | ||||||||||||||||||
seq2  TCTTTCGAAGCATGGTCTCCTGGATGTAAAGATGTCTTTGAACTCACTAT  350

seq1  GTCACTAAGGATGGCTTTGAACTTCCGATCTTCCCACCTCCATCTCTCAA  399
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  GTCACTAAGGATGGCTTTGAACTTCCAATCTTCCCACCTCCATCTCTCAA  400

seq1  GTGCTGGCATTACAGGTATGCACCCCCACAGTGCTTGGGAAGGACCCCCA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  GTGCTGGCATTACAGGTATGCACCCCCACAGTGCTTGGGAAGGACCCCCC  450

seq1  GGGGCATAATGCAAGCCACCTCCAGCACTCTCAGGGTTTTCTTTCCACAC  499
       ||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  CGGGCATAATGCAAGCCACCTCCATCACTCTCAGGGTTTTCTTTCCACAC  500

seq1  TAAGCTGTACTGTAACAATAGTGACCACAGCAGCAGCAAAAATCCACAGG  549
      ||| ||| ||||||||||||||||||||||||||| | |||||||| |||
seq2  TAACCTGAACTGTAACAATAGTGACCACAGCAGCAACTAAAATCCA-AGG  549

seq1  CGCTCCCCTCACTGAGCACCTTAGAGTGTGCCCTTAATTAGAAGATGCTG  599
      ||||||||||||||||||||||| | |||||||||||||  |||||||||
seq2  CGCTCCCCTCACTGAGCACCTTATATTGTGCCCTTAATTTTAAGATGCTG  599

seq1  TCTGGCTTAACAAAGTTCCTAAGAGTTAGAGATGAGGCTACAGAAGTTCA  649
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TCTGGCTTAACAAAGTTCCTAAGAGTTGGAGATGAGGCTACAGAAGTTCA  649

seq1  AGTCAGGAAATAGAAATCATAGCGACAGCTTTGACAGGCAAAATTCATCC  699
      ||||| |||||| || ||| | ||||||||||||| |||||||| |||||
seq2  AGTCAAGAAATATAAGTCACAACGACAGCTTTGAC-GGCAAAATACATCC  698

seq1  TAATTTATCATTGTTATCATGATATAAAATCGTTAACAAGGTGCCTGAGG  749
       |||||| |||||||||||||||||||||||   ||||| ||||||||  
seq2  CAATTTAACATTGTTATCATGATATAAAATCAGGAACAA-GTGCCTGA-C  746

seq1  GAGCAGCT-GGGGGAGGCAGCTCTCAGCCTGAAATGACCAACC-TTCCTT  797
      ||   ||| |||||||||| |||||||||||| |||||||||| ||||||
seq2  GAATGGCTGGGGGGAGGCAACTCTCAGCCTGAGATGACCAACCTTTCCTT  796

seq1  ATTTGTGGAGATGTGCTGAATT  819
      ||||||||||||||||||||||
seq2  ATTTGTGGAGATGTGCTGAATT  818

seq1: chr9_113480403_113481148
seq2: B6Ng01-008A11.g_70_830 (reverse)

seq1  CACATACACACACAC----------ACACACACACA------CACACACA  34
      |||||||||||||||          |||||||| ||       |||| ||
seq2  CACATACACACACACTTACTCTCAGACACACACTCAGACTCTGACACTCA  50

seq1  TGAGAAAAAAAGAAAAGAGACATGGCTAACTTAGCTGGTTGGTAGCACAA  84
      |||||| ||| |||||||||||||||||||||||||||||||||||||||
seq2  TGAGAAGAAAGGAAAAGAGACATGGCTAACTTAGCTGGTTGGTAGCACAA  100

seq1  CACATCTAAAAAAATTTTCAATGTCTTACTTCAATACCAACAACAGTGAG  134
      ||||||||||| ||||||||||||||||||||||  ||||||||||||||
seq2  CACATCTAAAATAATTTTCAATGTCTTACTTCAA-GCCAACAACAGTGAG  149

seq1  TGTAGGACTAGTCATATGCCCAGCTTACAAACTAACCCCAATGAGGCTCG  184
      ||||||| ||  ||||||||||||||||||||||||||||||||||||||
seq2  TGTAGGAGTATCCATATGCCCAGCTTACAAACTAACCCCAATGAGGCTCG  199

seq1  AGTTATTACAGCCCATCATTACACAGGCATTTCCCTCTTCAGAAAGTCTA  234
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTATTACAGCCCATCATTACACAGGCATTTCCCTCTTCAGAAAGTCTA  249

seq1  GTATGGCTTAGGGTCTCTACAACCAAGTTCTTTGATTCGAATTCATCCTC  284
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  GTATGGCTTAGGGTCTCTACAACCAAGTTCTTTGATTAGAATTCATCCTC  299

seq1  TGCACCTGACAAAAGCTAAAATGATGCTTAAAGCGTTGTATGCAGACATG  334
      ||||| |||||||||||||||||||||||||||||||||| |||||||||
seq2  TGCACGTGACAAAAGCTAAAATGATGCTTAAAGCGTTGTAGGCAGACATG  349

seq1  CATGTGTACATGTTTATATATATGCATGAGTGTGCAGATGCATACAGAGG  384
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGTACATGTTTATATATATGCATGAGTGTGCAGATGCATACAGAGG  399

seq1  CCAGAAGTTAACGTCTGTTATCCTTCTCAATGGTTCTCCACCTTATTTCA  434
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  CCAGAAGTTAACGTCTGTTATCCTTCTCAATGGTTTTCCACCTTATTTCA  449

seq1  TGAAAGGGGGACTCTCCCTGTCTGGAAGCTTCCTGATTTGGCTAGACTGG  484
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGGGGGACTCTCCCTGTCTGGAAGCTTCCTGATTTGGCTAGACTGG  499

seq1  ACAGCCAGGGAGCCCCAGGGACCTCCCGTGCCTCCCTCTTCAGTTCTGGA  534
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCCAGGGAGCCCCAGGGACCTCCCGTGCCTCCCTCTTCAGTTCTGGA  549

seq1  ACAGCACGCACACACCATCACACAGCTTTTATTATATAGGTAATGGGGAT  584
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCACGCACACACCATCACACAGCTTTTATTATATAGGTAATGGGGAT  599

seq1  CCAAACTCAGGCCCTCAGATAAATCTTTGAAAATGTATTGAGGAAGCTGG  634
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAACTCAGGCCCTCAGATAAATCTTTGAAAATGTATTGAGGAAGCTGG  649

seq1  AGAATGGCTTAGCCATTAAGAGCACTGGCTACTCTTCCAGAGGACTCTTG  684
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGGCTTAGCCATTAAGAGCACTGGCTACTCTTCCAGAGGACTCTTG  699

seq1  TTCACATCCCAGCACCCGCATGATGGCTCACAACCCTCTGTTACTCCAGT  734
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACATCCCAGCACCCGCATGATGGCTCACAACCCTCTGTTACTCCAGT  749

seq1  CCTGAGGAATTC  746
      || |||||||||
seq2  CCGGAGGAATTC  761