BAC Information

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BAC

Clone NameB6Ng01-010I05
Chromosome9 (Build37)
Map Location 31,455,584 - 31,608,378
singlet/doubletdoublet
Overlap geneEG666576
Upstream geneAdamts15, Adamts8, Zbtb44, BC038156, St14, Aplp2, EG638580, EG666539, Prdm10, Nfrkb, Tmem45b, LOC666558
Downstream geneBarx2, LOC100042266, Tpi-rs4, LOC666619, LOC666622, Grit, Kcnj5, Kcnj1, Fli1, LOC669759, LOC100041398, Ets1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-010I05.bB6Ng01-010I05.g
ACCDH846163DH846164
length1,077847
definitionDH846163|Mus musculus domesticus DNA, BAC clone: B6Ng01-010I05, 5' end.DH846164|Mus musculus domesticus DNA, BAC clone: B6Ng01-010I05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(31,455,584 - 31,456,687)(31,607,525 - 31,608,378)
sequence
gaattcatctatttcatttcagctgtcaagtttgtaggcatagtagtttg
taacaatcctttgttgtctcttcttttatttacaaataattaacctacat
tccctgttttgccttagatactttgctgaggttttattgatcttgtctat
gaatcacagttttcttgctgttttgtaattttctactttttttttttaaa
tttaaaatgctttacattttgctatgtatcgtcttatacttgtttagcat
ttaatccattcctgttttttctagttctcagggatacaatttgatattaa
aaaaaaaacaaaacaaaacccaaacctttcttattttctaatagctgtga
gcttccctctacagattaatttcagcacatctggctttggtaagtcacat
tttcatttttacttacttgaaaaggtttttcatttcccctgagatgtttt
cttttcctggttccttagtttggtggttctgtgcctctgtagtgggattt
cacaatgtctctccatccctctctgcttaggtgatgtagcaggacaagca
aataccagcaaataccgcaacatctctgcaggttactaatttgtttcttt
ctgagtatcaaccttgggtttcagagtggttctatttcagtgtgttcctg
atggaagtgggaggagactatttcctccgaaatttcctaggagaaactgg
tgggggctccatgtgcctgaggtccttccacgtgcccgagttccttactc
tcctgcgtaactgtgcgaagcctctagatactcgcagctacagtttgtgt
aactggtagccagctgctggctcccagaagagctttccgctcggctaagt
tgtgattctctgtattgtgggacaggtttggttgctgttcagtgtggtga
ctcacttatcttactattttagaagagccatttttttctttctttctttt
aaatttcttttctctttgcttgttgctaggaaaagcaccctctaactcct
ccaggggataacaaatttaataccaataacttatggaaatagtatcctct
ttctgaactttggtaattagtacttgg
gaattcatttaggagttcatttgtgtcctcgttagttttaaaaatatttt
tataatcactcttttaaactttaagattttatctatttgactgtcattgg
gagccattactgtgggactgacatttttcagggggaacatcatatggcct
tgctttctcttttattaatgtgcttggacttaagcatatacggctattcc
actgactcactgtaattcattgttttatgggctgtattgattgagttgaa
gtacttgcaatatccagttggggctccattgtgatggggttgaggtggat
agttcataagttaaacactgaatccatgtgctcagtgtaagcaagggcac
agtgaagccactgaattagaccactccgtgggtggaaacaaaggtttact
caaactgccaaagcagagagagagagagagagagagagagagagagagag
agagagagagagagattagcaaaaggcaagggaagctttgctggttttat
agaaacaggcggtgggctggagatagcttagtggttaagagcagtggctg
ctcttctagaggacccagactcaattctcagcatctacatggtggttcaa
aagaatttaacatcctcttttagcttttaagcgcatcacatgctcacgat
gcaaagaaatacgcacacgcagaggaagcagactgcatcaggagggggtc
tgtaagctggaactgcgtgggaggtagaatagctatgggagaggtgtgca
tgccaaaaggctggaggactagcttgggggtttgctgtgtgtcccaatat
gttttaataaggatctaatgtctcattgctggactgtaaggtgataa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_31455584_31456687
seq2: B6Ng01-010I05.b_46_1122

seq1  GAATTCATCTATTTCATTTCAGCTGTCAAGTTTGTAGGCATAGTAGTTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCTATTTCATTTCAGCTGTCAAGTTTGTAGGCATAGTAGTTTG  50

seq1  TAACAATCCTTTGTTGTCTCTTCTTTTATTTACAAATAATTAACCTACAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAATCCTTTGTTGTCTCTTCTTTTATTTACAAATAATTAACCTACAT  100

seq1  TCCCTGTTTTGCCTTAGATACTTTGCTGAGGTTTTATTGATCTTGTCTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGTTTTGCCTTAGATACTTTGCTGAGGTTTTATTGATCTTGTCTAT  150

seq1  GAATCACAGTTTTCTTGCTGTTTTGTAATTTTCTACTTTTTTTTTTTAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCACAGTTTTCTTGCTGTTTTGTAATTTTCTACTTTTTTTTTTTAAA  200

seq1  TTTAAAATGCTTTACATTTTGCTATGTATCGTCTTATACTTGTTTAGCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAATGCTTTACATTTTGCTATGTATCGTCTTATACTTGTTTAGCAT  250

seq1  TTAATCCATTCCTGTTTTTTCTAGTTCTCAGGGATACAATTTGATATTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATCCATTCCTGTTTTTTCTAGTTCTCAGGGATACAATTTGATATTAA  300

seq1  AAAAAAAACAAAACAAAACCCAAACCTTTCTTATTTTCTAATAGCTGTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAACAAAACAAAACCCAAACCTTTCTTATTTTCTAATAGCTGTGA  350

seq1  GCTTCCCTCTACAGATTAATTTCAGCACATCTGGCTTTGGTAAGTCACAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCCCTCTACAGATTAATTTCAGCACATCTGGCTTTGGTAAGTCACAT  400

seq1  TTTCATTTTTACTTACTTGAAAAGGTTTTTCATTTCCCCTGAGATGTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATTTTTACTTACTTGAAAAGGTTTTTCATTTCCCCTGAGATGTTTT  450

seq1  CTTTTCCTGGTTCCTTAGTTTGGTGGTTCTGTGCCTCTGTAGTGGGATTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCCTGGTTCCTTAGTTTGGTGGTTCTGTGCCTCTGTAGTGGGATTT  500

seq1  CACAATGTCTCTCCATCCCTCTCTGCTTAGGTGATGTAGCAGGACAAGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAATGTCTCTCCATCCCTCTCTGCTTAGGTGATGTAGCAGGACAAGCA  550

seq1  AATACCAGCAAATACCGCAACATCTCTGCAGGTTACTAATTTGTTTCTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACCAGCAAATACCGCAACATCTCTGCAGGTTACTAATTTGTTTCTTT  600

seq1  CTGAGTATCAACCTTGGGTTTCAGAGTGGTTCTATTTCAGTGTGTTCCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGTATCAACCTTGGGTTTCAGAGTGGTTCTATTTCAGTGTGTTCCTG  650

seq1  ATGGAAGTGGGAGGAGACTATTTCCTCCGAAATTTCCTAGGAGAAACTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAAGTGGGAGGAGACTATTTCCTCCGAAATTTCCTAGGAGAAACTGG  700

seq1  TGGGGGCTCCATGTGCCTGAGGTCCTTCCACGTGCCCGAGGTTCCTTACT  750
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TGGGGGCTCCATGTGCCTGAGGTCCTTCCACGTGCCCGA-GTTCCTTACT  749

seq1  CTCCTGCGTAACTGTGCGAAGCCTCTAGATACTCGCAGCTACAGTTTGTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGCGTAACTGTGCGAAGCCTCTAGATACTCGCAGCTACAGTTTGTG  799

seq1  TAACTGGTAGCCAGCTGCTGGCTCCCAGAAGAGCTTTCCGCTCGGCTAAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTGGTAGCCAGCTGCTGGCTCCCAGAAGAGCTTTCCGCTCGGCTAAG  849

seq1  TTGTGATTCTCTGTATTGTGGGACAGGTTTTGGTTTGCTTGTTCAGTGTG  900
      ||||||||||||||||||||||||||||||  | |||| |||||||||||
seq2  TTGTGATTCTCTGTATTGTGGGACAGGTTT--GGTTGC-TGTTCAGTGTG  896

seq1  GTGACTCACTTATCTTACATATTTTAGAAGAGCCAATTTTTTTCTTTCCT  950
      |||||||||||||||||| ||||||||||||||| |||||||||||| ||
seq2  GTGACTCACTTATCTTAC-TATTTTAGAAGAGCC-ATTTTTTTCTTT-CT  943

seq1  TTCTTTTAAAATTTCTTTTTCTCTTTGCTTGTTGCTAGGATAAAAGCA-C  999
      ||||||| ||||||| |||||||||||||||||||||||  ||||||| |
seq2  TTCTTTT-AAATTTC-TTTTCTCTTTGCTTGTTGCTAGG--AAAAGCACC  989

seq1  CTCTGAACTCCCTCCAGGTGCAGAACCAAAATTTAAAATACCAATATACT  1049
      |||| |||| |||||||| | | |||  ||||||  |||||||||| |||
seq2  CTCT-AACT-CCTCCAGG-GGATAAC--AAATTT--AATACCAATA-ACT  1031

seq1  TTATTGGAATATTAGTATCCTTCTTTCATGAACTTTTGTTAATTAGGTAA  1099
      |   ||||  | |||||||| |||||| ||||| |||| |||||||   |
seq2  T--ATGGA--AATAGTATCC-TCTTTC-TGAAC-TTTGGTAATTAG--TA  1072

seq1  CTTGG  1104
      |||||
seq2  CTTGG  1077

seq1: chr9_31607525_31608378
seq2: B6Ng01-010I05.g_66_912 (reverse)

seq1  TTATCACCTTTACAGTCCAGCAATGGGGCATTTAGATCCTTATTAAAACA  50
      |||||||| |||||||||||||||| | || |||||||||||||||||||
seq2  TTATCACC-TTACAGTCCAGCAATGAGACA-TTAGATCCTTATTAAAACA  48

seq1  TATCTGCGACACACAGCAAAGCCCCCAAGCTAGTCCTCCAGCCCTTCTGG  100
      ||| || ||||||||||||| |||||||||||||||||||| |||| |||
seq2  TAT-TGGGACACACAGCAAA-CCCCCAAGCTAGTCCTCCAG-CCTTTTGG  95

seq1  CCTGCACACCTCTCCCATAGCTATTCTACCTCCCACGCAGTTCCAGCTTA  150
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCACACCTCTCCCATAGCTATTCTACCTCCCACGCAGTTCCAGCTTA  145

seq1  CAGACCCCCTCCTGATGCAGTCTGCTTCCTCTGCGTGTGCGTATTTCTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACCCCCTCCTGATGCAGTCTGCTTCCTCTGCGTGTGCGTATTTCTTT  195

seq1  GCATCGTGAGCATGTGATGCGCTTAAAAGCTAAAAGAGGATGTTAAATTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCGTGAGCATGTGATGCGCTTAAAAGCTAAAAGAGGATGTTAAATTC  245

seq1  TTTTGAACCACCATGTAGATGCTGAGAATTGAGTCTGGGTCCTCTAGAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGAACCACCATGTAGATGCTGAGAATTGAGTCTGGGTCCTCTAGAAG  295

seq1  AGCAGCCACTGCTCTTAACCACTAAGCTATCTCCAGCCCACCGCCTGTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGCCACTGCTCTTAACCACTAAGCTATCTCCAGCCCACCGCCTGTTT  345

seq1  CTATAAAACCAGCAAAGCTTCCCTTGCCTTTTGCTAATCTCTCTCTCTCT  400
      |||||||||||||||||||||||||||||||||||||  |||||||||||
seq2  CTATAAAACCAGCAAAGCTTCCCTTGCCTTTTGCTAA--TCTCTCTCTCT  393

seq1  CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGCTTTGGCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGCTTTGGCAG  443

seq1  TTTGAGTAAACCTTTGTTTCCACCCACGGAGTGGTCTAATTCAGTGGCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGTAAACCTTTGTTTCCACCCACGGAGTGGTCTAATTCAGTGGCTT  493

seq1  CACTGTGCCCTTGCTTACACTGAGCACATGGATTCAGTGTTTAACTTATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGTGCCCTTGCTTACACTGAGCACATGGATTCAGTGTTTAACTTATG  543

seq1  AACTATCCACCTCAACCCCATCACAATGGAGCCCCAACTGGATATTGCAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTATCCACCTCAACCCCATCACAATGGAGCCCCAACTGGATATTGCAA  593

seq1  GTACTTCAACTCAATCAATACAGCCCATAAAACAATGAATTACAGTGAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTTCAACTCAATCAATACAGCCCATAAAACAATGAATTACAGTGAGT  643

seq1  CAGTGGAATAGCCGTATATGCTTAAGTCCAAGCACATTAATAAAAGAGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGAATAGCCGTATATGCTTAAGTCCAAGCACATTAATAAAAGAGAA  693

seq1  AGCAAGGCCATATGATGTTCCCCCTGAAAAATGTCAGTCCCACAGTAATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGGCCATATGATGTTCCCCCTGAAAAATGTCAGTCCCACAGTAATG  743

seq1  GCTCCCAATGACAGTCAAATAGATAAAATCTTAAAGTTTAAAAGAGTGAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCCAATGACAGTCAAATAGATAAAATCTTAAAGTTTAAAAGAGTGAT  793

seq1  TATAAAAATATTTTTAAAACTAACGAGGACACAAATGAACTCCTAAATGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAAAATATTTTTAAAACTAACGAGGACACAAATGAACTCCTAAATGA  843

seq1  ATTC  854
      ||||
seq2  ATTC  847