BAC Information

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BAC

Clone NameB6Ng01-012D24
Chromosome9 (Build37)
Map Location 25,049,504 - 25,194,666
singlet/doubletdoublet
Overlap gene9130004C02Rik, Sept7
Upstream geneNpsr1, Dpy19l1, Cypt4, Tbx20, LOC666251, LOC100040960, Herpud2, LOC666297
Downstream geneEG666327, 2310005P05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-012D24.bB6Ng01-012D24.g
ACCDH847394DH847395
length9551,098
definitionDH847394|Mus musculus domesticus DNA, BAC clone: B6Ng01-012D24, 5' end.DH847395|Mus musculus domesticus DNA, BAC clone: B6Ng01-012D24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(25,049,504 - 25,050,456)(25,193,576 - 25,194,666)
sequence
gaattccaattatacaagtggacaaataaaaggtacaaggctccattcca
aagttcataccttggaggtatgttgctcatgacaggttgacattttgcta
ggtatgttcaaatatttaattttaaagcatagtgtaagctgggcggtggt
ggcacacacctttaatcccagcacttggaaggcagaggcaggtggatttc
tgagttcgaggtcagcctggtctacagagtgagttccgggacagccagtg
ctacacagagaaaccctgtcttgaaaaaaaccaaaaaaaaaaaaaaaaaa
aaaccaaaaaaccaacaacatcaagaacaaaaaattactcccccaatagc
atagtgtagattttatacactgttctgtaattctgtaatttaaaattttg
acttagcagtgtatttagacccagtgttctatttcctcagctggatttta
atgatataaatatgctattaatgaatgaccgcttacttattatttttgct
cactggtgtatgagtgaattcttaagtatgtagtcatattttggcatgcg
tactaggtatttttttctaggacaaattcctagaagaaaaattggtgagt
actcatactgagcagcctttgttaagttgcatggagaatgttacaggatc
cgttgtatccctcaacaactacaagcctttcattcacctgggggcttgag
aatgagagtgtattttcaagacaggacttttaagggagattaagttattt
aagaaaaatgatgttgttaaagaggccatactcactctgaactattatcc
taataagacaaagaagtctggatgtacaaagatatcaaccatgtgcacat
gtacagcaaagaccatggcagagacagataaatcaggcaggctctgttag
ctaaggaagaagttacaggaaaagctagcttactaacactttctttttgg
ccttt
gaattctttcctgtacccagagaagcagacttttgtagtataaataatat
atgggggattgattacataagccccacaaatactcaaatctgtcagtaaa
tgttcactttccttatataaaatagtatgggattctcatataacctatgt
gcatctcatgtttttttgaatcatttctagaatactcctaatatgaaata
cagtgtaagcactgcgtcagttcttgatcagaatgatttaggaaataata
ataaaaagtaaagtctgtatctattcaatgcaggtgcaattctctacata
tttctgatctgtgaacagttagatccactgatgtactcaaagatatcaat
ggtcctttctgtctccgtctggagtatctacatggcattggcttcctatg
ttcacagattctcaatagcaagagatgtataggatctttcttctatctta
agatcatgaactctccacagccaatgcgagtgttgtctaggtcgagttcc
aggaagatgctactggtatttaaacaatagcagcttgcctgctggcatct
tatgtttaccatcttgttctctccctgccctgtagaattcttccaggggt
ttctatcatgtctggagcctcggactccgtataatcagatcttggagtca
gtgactcctttctcctattctagaaccttgtggcctaacccaaactctag
ggctccattattgggtatttgcctcagtagtctatttgaaactcaacagg
aagatatgttaccatagaacagtgtcctcctaaggaccaaggtctgggaa
agaatcaaagagaaagtttatatgtatcccctgggcttactcatgtcgct
gccattcaagaatcatcacgtatgtgaactaatgtatgttcacgctggga
agttcatacacacacatgtaagtaaaagccaaacagcaacaggcggaatg
tttcaagtctatctcaatgctaaagcaataactgtggagtttgtttccct
catctcctacatttgaaaatccagtttcttcgaataaatatctttataaa
attctgaaagaaggggtgggaaacatgaaccccctccactaaaaatgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_25049504_25050456
seq2: B6Ng01-012D24.b_45_999

seq1  GAATTCCAATTATACAAGTGGACAAATAAAAGGTACAAGGCTCCATTCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAATTATACAAGTGGACAAATAAAAGGTACAAGGCTCCATTCCA  50

seq1  AAGTTCATACCTTGGAGGTATGTTGCTCATGACAGGTTGACATTTTGCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTCATACCTTGGAGGTATGTTGCTCATGACAGGTTGACATTTTGCTA  100

seq1  GGTATGTTCAAATATTTAATTTTAAAGCATAGTGTAAGCTGGGCGGTGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATGTTCAAATATTTAATTTTAAAGCATAGTGTAAGCTGGGCGGTGGT  150

seq1  GGCACACACCTTTAATCCCAGCACTTGGAAGGCAGAGGCAGGTGGATTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACACACCTTTAATCCCAGCACTTGGAAGGCAGAGGCAGGTGGATTTC  200

seq1  TGAGTTCGAGGTCAGCCTGGTCTACAGAGTGAGTTCCGGGACAGCCAGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTCGAGGTCAGCCTGGTCTACAGAGTGAGTTCCGGGACAGCCAGTG  250

seq1  CTACACAGAGAAACCCTGTCTTGAAAAAAACCAAAAAAAAAAAAAAAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACACAGAGAAACCCTGTCTTGAAAAAAACCAAAAAAAAAAAAAAAAAA  300

seq1  AAACCAAAAAACCAACAACATCAAGAACAAAAAATTACTCCCCCAATAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCAAAAAACCAACAACATCAAGAACAAAAAATTACTCCCCCAATAGC  350

seq1  ATAGTGTAGATTTTATACACTGTTCTGTAATTCTGTAATTTAAAATTTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTGTAGATTTTATACACTGTTCTGTAATTCTGTAATTTAAAATTTTG  400

seq1  ACTTAGCAGTGTATTTAGACCCAGTGTTCTATTTCCTCAGCTGGATTTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAGCAGTGTATTTAGACCCAGTGTTCTATTTCCTCAGCTGGATTTTA  450

seq1  ATGATATAAATATGCTATTAATGAATGACCGCTTACTTATTATTTTTGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATATAAATATGCTATTAATGAATGACCGCTTACTTATTATTTTTGCT  500

seq1  CACTGGTGTATGAGTGAATTCTTAAGTATGTAGTCATATTTTGGCATGCG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGGTGTATGAGTGAATTCTTAAGTATGTAGTCATATTTTGGCATGCG  550

seq1  TACTAGGTATTTTTTTCTAGGACAAATTCCTAGAAGAAAAATTGGTGAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTAGGTATTTTTTTCTAGGACAAATTCCTAGAAGAAAAATTGGTGAGT  600

seq1  ACTCATACTGAGCAGCCTTTGTTAAGTTGCATGGAGAATGTTACAGGATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCATACTGAGCAGCCTTTGTTAAGTTGCATGGAGAATGTTACAGGATC  650

seq1  CGTTGTATCCCTCAACAACTACAAGCCTTTCATTCACCT-GGGGCTTGAG  699
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  CGTTGTATCCCTCAACAACTACAAGCCTTTCATTCACCTGGGGGCTTGAG  700

seq1  AATGAGAGTGTA-TTTCAAGACAGGACCTTTAAGGGAGATTAAGTTA-TT  747
      |||||||||||| |||||||||||||| ||||||||||||||||||| ||
seq2  AATGAGAGTGTATTTTCAAGACAGGACTTTTAAGGGAGATTAAGTTATTT  750

seq1  AAGAAAAATGATGTTGTTAAAGAGGCCATAACTCACTCTG-ACTAGTATC  796
      ||||||||||||||||||||||||||||| |||||||||| |||| ||||
seq2  AAGAAAAATGATGTTGTTAAAGAGGCCAT-ACTCACTCTGAACTATTATC  799

seq1  CTAATAAGACAAAGAAGTCTGGATGTACAAAGATATCAACCATGTGCACA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATAAGACAAAGAAGTCTGGATGTACAAAGATATCAACCATGTGCACA  849

seq1  TGTAGAGCAAAGACCAT-GCAGAGACAGAGAAATCAGGCAGGCGTCTGTA  895
      |||| |||||||||||| ||||||||||| ||||||||||||| ||||| 
seq2  TGTACAGCAAAGACCATGGCAGAGACAGATAAATCAGGCAGGC-TCTGTT  898

seq1  AGCTAAGGACAGAAGCTACAGGAAAAGCTAGCTTACTAACACCTTCATCT  945
      ||||||||| ||||| |||||||||||||||||||||||||| ||| | |
seq2  AGCTAAGGA-AGAAGTTACAGGAAAAGCTAGCTTACTAACACTTTCTTTT  947

seq1  TGGCCTTT  953
      ||||||||
seq2  TGGCCTTT  955

seq1: chr9_25193576_25194666
seq2: B6Ng01-012D24.g_65_1162 (reverse)

seq1  ACATGTTTAGTGGA-GGGGTTCATAGTT-CCACACATT-TTCCAGAA-TC  46
      |||| ||||||||| |||||||||  || |||| | || || ||||| | 
seq2  ACATTTTTAGTGGAGGGGGTTCATGTTTCCCACCCCTTCTTTCAGAATTT  50

seq1  TATAAAG-TATTTATCAGAAGAAACTTGATTTTTCAAATGTA-GAGATG-  93
      ||||||| |||||||  ||||||||| || |||||||||||| |||||| 
seq2  TATAAAGATATTTATTCGAAGAAACTGGA-TTTTCAAATGTAGGAGATGA  99

seq1  GTGAAACAAAACCTCCACAGTTATTGCTGTAGCATTGAGATGGGACTTGA  143
      | ||||||||  |||||||||||||||| ||||||||||||  |||||||
seq2  GGGAAACAAA--CTCCACAGTTATTGCTTTAGCATTGAGAT-AGACTTGA  146

seq1  AACATTCCGCCTTGTTGCTGTTTGGCTTTTACTTACATGTGTGTGTATGA  193
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  AACATTCCGCC-TGTTGCTGTTTGGCTTTTACTTACATGTGTGTGTATGA  195

seq1  ACTTCCCAGCGTGAACATACA-TAGTTCACATACGTGATGATTCTTGAAT  242
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  ACTTCCCAGCGTGAACATACATTAGTTCACATACGTGATGATTCTTGAAT  245

seq1  GGCAGGGACATG-GTAAGCCCAGGGGATACATAT-AACTTCCTCTTTGAT  290
      ||||| |||||| ||||||||||||||||||||| ||||| |||||||||
seq2  GGCAGCGACATGAGTAAGCCCAGGGGATACATATAAACTTTCTCTTTGAT  295

seq1  TCTTTCCCAGACCTTGGTCCTTAGGAGG-CACTGTTCTATGGTAACATAT  339
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TCTTTCCCAGACCTTGGTCCTTAGGAGGACACTGTTCTATGGTAACATAT  345

seq1  CTTCCTGTTGAGTTTCAAATAGACTACTGAGGCAAATA-CCAATAATGGA  388
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  CTTCCTGTTGAGTTTCAAATAGACTACTGAGGCAAATACCCAATAATGGA  395

seq1  GCCCTAGAGTTTGGGTTAGGCCACAAGGTTCTAGAATAGGAGAAAGGAGT  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTAGAGTTTGGGTTAGGCCACAAGGTTCTAGAATAGGAGAAAGGAGT  445

seq1  CACTGACTCCAAGATCTGATTATACGGAGTCCGAGGCTCCAGACATGATA  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGACTCCAAGATCTGATTATACGGAGTCCGAGGCTCCAGACATGATA  495

seq1  GAAACCCCTGGAAGAATTCTACAGGGCAGGGAGAGAACAAGATGGTAAAC  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACCCCTGGAAGAATTCTACAGGGCAGGGAGAGAACAAGATGGTAAAC  545

seq1  ATAAGATGCCAGCAGGCAAGCTGCTATTGTTTAAATACCAGTAGCATCTT  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGATGCCAGCAGGCAAGCTGCTATTGTTTAAATACCAGTAGCATCTT  595

seq1  CCTGGAACTCGACCTAGACAACACTCGCATTGGCTGTGGAGAGTTCATGA  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGAACTCGACCTAGACAACACTCGCATTGGCTGTGGAGAGTTCATGA  645

seq1  TCTTAAGATAGAAGAAAGATCCTATACATCTCTTGCTATTGAGAATCTGT  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAAGATAGAAGAAAGATCCTATACATCTCTTGCTATTGAGAATCTGT  695

seq1  GAACATAGGAAGCCAATGCCATGTAGATACTCCAGACGGAGACAGAAAGG  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACATAGGAAGCCAATGCCATGTAGATACTCCAGACGGAGACAGAAAGG  745

seq1  ACCATTGATATCTTTGAGTACATCAGTGGATCTAACTGTTCACAGATCAG  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATTGATATCTTTGAGTACATCAGTGGATCTAACTGTTCACAGATCAG  795

seq1  AAATATGTAGAGAATTGCACCTGCATTGAATAGATACAGACTTTACTTTT  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATGTAGAGAATTGCACCTGCATTGAATAGATACAGACTTTACTTTT  845

seq1  TATTATTATTTCCTAAATCATTCTGATCAAGAACTGACGCAGTGCTTACA  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATTATTTCCTAAATCATTCTGATCAAGAACTGACGCAGTGCTTACA  895

seq1  CTGTATTTCATATTAGGAGTATTCTAGAAATGATTCAAAAAAACATGAGA  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTATTTCATATTAGGAGTATTCTAGAAATGATTCAAAAAAACATGAGA  945

seq1  TGCACATAGGTTATATGAGAATCCCATACTATTTTATATAAGGAAAGTGA  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACATAGGTTATATGAGAATCCCATACTATTTTATATAAGGAAAGTGA  995

seq1  ACATTTACTGACAGATTTGAGTATTTGTGGGGCTTATGTAATCAATCCCC  1038
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTACTGACAGATTTGAGTATTTGTGGGGCTTATGTAATCAATCCCC  1045

seq1  CATATATTATTTATACTACAAAAGTCTGCTTCTCTGGGTACAGGAAAGAA  1088
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATATTATTTATACTACAAAAGTCTGCTTCTCTGGGTACAGGAAAGAA  1095

seq1  TTC  1091
      |||
seq2  TTC  1098