BAC Information

Click to search

BAC

Clone NameB6Ng01-014E16
Chromosome9 (Build37)
Map Location 37,042,098 - 37,201,360
singlet/doubletdoublet
Overlap geneSlc37a2, LOC100042561, Ccdc15, Hepacam
Upstream geneLOC100042485, EG639025, LOC671003, EG434396, A630095E13Rik, Acrv1, Chek1, Stt3a, Ei24, LOC627681, Fez1, Pknox2, LOC100042545, 1810021J13Rik
Downstream geneRobo4, Robo3, BC024479, Esam1, Vsig2, Nrgn, Spa17, Siae, Tbrg1, Panx3, LOC666881, EG627798, Olfr160, Olfr151, Olfr874, Olfr875, Olfr876, Olfr877, Olfr145, EG627852, Olfr878, GA_x5J8B7W60AJ-1667802-1666911, Olfr880-ps1, Olfr881, Olfr882-ps1, Olfr883, Olfr884, Olfr1550-ps1, Olfr885, Olfr886-ps1, Olfr887, Olfr888, Olfr889, Olfr890, Olfr891, Olfr892-ps1, Olfr893, Olfr894, Olfr143, Olfr895, Olfr896-ps1, Olfr897-ps1, Olfr25, Olfr898, Olfr899, Olfr900
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-014E16.bB6Ng01-014E16.g
ACCDH848879DH848880
length1,1351,048
definitionDH848879|Mus musculus domesticus DNA, BAC clone: B6Ng01-014E16, 5' end.DH848880|Mus musculus domesticus DNA, BAC clone: B6Ng01-014E16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(37,042,098 - 37,043,245)(37,200,308 - 37,201,360)
sequence
gaattctacatatcacttgcttttcccgccttgtgcatctgcacttctca
ggtctttatgtgtctcaatagatggtctaactatggtaatctctaatttc
cttttatttttcttatggttttgaaatgagaatcatgcaacccagggtct
cctgaaactcactctgtagctgaggaagactttgaactcctgattccccc
tgcctttacctcccaaatcctgggattacaggcatgcatggctctctaat
ttcccctctcccacaaacatcttttgtgtctatcctcaatctcttcatta
ttccttgctcaaaaaatgtcacggctggtgtttcctttccccaccaaggc
gagataatcactaatcccattccgggattattaatcctggtctcttttca
cagagcctggtcctctgctgactctcatttttctgtctctacatgtgccc
aggaatatacatacacatgaagaaagacatagctgtgcaggcaaatatag
ggatggatacatgggtccatccaggccctagacacctgatcccaagcata
tgcatgctgagactgaacgtaccatgggagcagccaagatcagcatgatg
cagcaagtggtggccctgctattggtgtagtcgctgatgagccctgccat
gatgccacctgaaacacatgctcactcgcaagctgtctttgacactacgt
gctgttcctcatctgctgcccagtgctgggctggccttaagaatcaccac
ctccctctgcagtcttcccctgttcccatcactccaagaaaccacagagc
aatgatcacttttcttaggcccacccagtctagcaggaacagaaatgaga
atacattaggaggctttcgctctctacccagatcatggccagctgtccct
tctttctgtacctctgcatagaagcaaaataaaagacagcatgccagaca
aaaggacagggcctcactatgatgcacaacatcaaaagcgtggatagttc
ctcagcctcctgggcactaagtgagctatggaaaacacaaaaacatatcg
accacggggaggtttggaacaattttcttgaatgaacagcagcagagttc
ttggtggcgcattaatcagtcaggaaagggctgag
gaattctggtctcctggagttctgctaagagcaagttgttgttaaagcct
gagcctggcgctgaattactcttaggcttcctgttctggggcaatcgctc
acacccacacatggttttgttattgtccacgttgagtggatgtcagtgcc
atgtctttgaacttccagaactgatcatcagataaaccccttctcttttt
aaggctcaccggcttcaggtgcttcatttcagtgataacaaaatggatca
gtaagaaaggcatcttagtaaagtcgggagtagctgatactgactcaggc
aagcaagaagtaaggctatactcctgcttacacaatctttctgcttacat
ttttctaaatgttctttttattttaatattaattgattgattgattgatt
gattgatttttggttttttgagacagggtttctctgtgtagacatgagga
gttcatttggagtgtcacaccaacgccagtaggatccgtgtgacaagttt
tatagactgaggtaaaaactttaaaagaaggaggcctcctggaactggtt
gtggaacttttggcaggcataaaatattgagccgtagttctcttggcagc
tttcttgttttatcttttttatttcttttcttatttatgagatgttcttg
atagcctaggctaagatcttaagtgagactattgggtaagaaaccatccc
ttgagatggagtcactaacatgaccttatctctggggaaagccagtgctt
tactttattaatcatgtgtgatagtattttattaataaataaaaactttt
ctccacaataaaatttttatatgggctacacatgttgttatggggaagta
gcctttgattatatggtttagaagccttaatttaaaaaattaaatagttt
aatttatgttttagagatttatttaaaaaatcaggtatagatgtaatagt
actgatcataaaatttattaacttgtccttagaaaattgtccctagccta
gatgatttttggatttacgtgggcaaatgcttatataaatatcattct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_37042098_37043245
seq2: B6Ng01-014E16.b_46_1180

seq1  GAATTCTACATATCACTTGCTTTTCCCGCCTTGTGCATCTGCACTTCTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTACATATCACTTGCTTTTCCCGCCTTGTGCATCTGCACTTCTCA  50

seq1  GGTCTTTATGTGTCTCAATAGATGGTCTAACTATGGTAATCTCTAATTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTTTATGTGTCTCAATAGATGGTCTAACTATGGTAATCTCTAATTTC  100

seq1  CTTTTATTTTTCTTATGGTTTTGAAATGAGAATCATGCAACCCAGGGTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTATTTTTCTTATGGTTTTGAAATGAGAATCATGCAACCCAGGGTCT  150

seq1  CCTGAAACTCACTCTGTAGCTGAGGAAGACTTTGAACTCCTGATTCCCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAAACTCACTCTGTAGCTGAGGAAGACTTTGAACTCCTGATTCCCCC  200

seq1  TGCCTTTACCTCCCAAATCCTGGGATTACAGGCATGCATGGCTCTCTAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTTACCTCCCAAATCCTGGGATTACAGGCATGCATGGCTCTCTAAT  250

seq1  TTCCCCTCTCCCACAAACATCTTTTGTGTCTATCCTCAATCTCTTCATTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCCTCTCCCACAAACATCTTTTGTGTCTATCCTCAATCTCTTCATTA  300

seq1  TTCCTTGCTCAAAAAATGTCACGGCTGGTGTTTCCTTTCCCCACCAAGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTGCTCAAAAAATGTCACGGCTGGTGTTTCCTTTCCCCACCAAGGC  350

seq1  GAGATAATCACTAATCCCATTCCGGGATTATTAATCCTGGTCTCTTTTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATAATCACTAATCCCATTCCGGGATTATTAATCCTGGTCTCTTTTCA  400

seq1  CAGAGCCTGGTCCTCTGCTGACTCTCATTTTTCTGTCTCTACATGTGCCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGCCTGGTCCTCTGCTGACTCTCATTTTTCTGTCTCTACATGTGCCC  450

seq1  AGGAATATACATACACATGAAGAAAGACATAGCTGTGCAGGCAAATATAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATATACATACACATGAAGAAAGACATAGCTGTGCAGGCAAATATAG  500

seq1  GGATGGATACATGGGTCCATCCAGGCCCTAGACACCTGATCCCAAGCATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGGATACATGGGTCCATCCAGGCCCTAGACACCTGATCCCAAGCATA  550

seq1  TGCATGCTGAGACTGAACGTACCATGGGAGCAGCCAAGATCAGCATGATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATGCTGAGACTGAACGTACCATGGGAGCAGCCAAGATCAGCATGATG  600

seq1  CAGCAAGTGGTGGCCCTGCTATTGGTGTAGTCGCTGATGAGCCCTGCCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAAGTGGTGGCCCTGCTATTGGTGTAGTCGCTGATGAGCCCTGCCAT  650

seq1  GATGCCACCTGAAACACATGCTCACTCGCAAGCTGTCTTTGACACTACGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCCACCTGAAACACATGCTCACTCGCAAGCTGTCTTTGACACTACGT  700

seq1  GCTGTTCCTCATCTGCTGCCCAGTGCTGGGCTGGCCTTAAGAATCACCAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTTCCTCATCTGCTGCCCAGTGCTGGGCTGGCCTTAAGAATCACCAC  750

seq1  CTCCCTCTGCAGTCTTCCCCTGTTCCCATCACTCCAAGAAACCACAGAGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTCTGCAGTCTTCCCCTGTTCCCATCACTCCAAGAAACCACAGAGC  800

seq1  AATGATCACTTTTCTTAGGCCCACCCAGTCTAGCAGGAACAGAAATGAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATCACTTTTCTTAGGCCCACCCAGTCTAGCAGGAACAGAAATGAGA  850

seq1  ATACATTAGGAGGCTTTCGCTCTCTACCCAGATCATGGCCAGCTGTCCCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATTAGGAGGCTTTCGCTCTCTACCCAGATCATGGCCAGCTGTCCCT  900

seq1  TCTTTCTGTACCTCTGCATAGAAGCAAAATAAAAGACAGCATGCCAGGAC  950
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TCTTTCTGTACCTCTGCATAGAAGCAAAATAAAAGACAGCATGCCA-GAC  949

seq1  AAAAGGACAGGGCCTCACCTATGATGCCACCAACATCAAAAAGCGTGGAT  1000
      ||||||||||||||||| |||||||||   ||||||| ||||||||||||
seq2  AAAAGGACAGGGCCTCA-CTATGATGC--ACAACATC-AAAAGCGTGGAT  995

seq1  AGGTCCCCAGCCTCCTTGGCACTAAAGTGAGCTATGGAAAACACAAAAAC  1050
      || ||| ||||||||| |||||| ||||||||||||||||||||||||||
seq2  AGTTCCTCAGCCTCCTGGGCACT-AAGTGAGCTATGGAAAACACAAAAAC  1044

seq1  ATAATCAGACACACGGGGAGGTTTGGAACAAATCTCCTGAATGACACAGC  1100
      || ||| ||| |||||||||||||||||||| | || ||||||| |||| 
seq2  AT-ATC-GAC-CACGGGGAGGTTTGGAACAATTTTCTTGAATGA-ACAG-  1089

seq1  CAGCAGAGTTCCT-GTGGCGCATTAATCCAGTCCAAGGAAAAGGCTGAG  1148
      ||||||||||| | ||||||||||||| |||||  |||||| |||||||
seq2  CAGCAGAGTTCTTGGTGGCGCATTAAT-CAGTC--AGGAAAGGGCTGAG  1135

seq1: chr9_37200308_37201360
seq2: B6Ng01-014E16.g_68_1115 (reverse)

seq1  AGAATGGATATTATTATAAGCATTTGGCACAGTAAAATACAAAAATCATC  50
      ||||| ||||||  ||||||||||| || ||   |||| |||||||||||
seq2  AGAAT-GATATTTATATAAGCATTT-GCCCACGTAAATCCAAAAATCATC  48

seq1  TAAGGCTAGTGACAATTTTCTAAGGACAAGTTAATAAATTTTTATGATCA  100
      | ||||||| |||||||||||||||||||||||||||| |||||||||||
seq2  T-AGGCTAGGGACAATTTTCTAAGGACAAGTTAATAAA-TTTTATGATCA  96

seq1  GTTACTATTTAACATCTAATACCTGATTTTTTTAAATAAATCTCTAAAAC  150
      | |||||||  |||||| |||||||| |||||||||||||||||||||||
seq2  G-TACTATT--ACATCT-ATACCTGA-TTTTTTAAATAAATCTCTAAAAC  141

seq1  ATAAATTTAAACTATTTTAATTTTTTAATTTAAGGCCTTCTTAAACAATA  200
      ||||| |||||||| ||||||||||||| |||||| |||| ||||| |||
seq2  ATAAA-TTAAACTA-TTTAATTTTTTAAATTAAGG-CTTC-TAAACCATA  187

seq1  T-ATCAAAGGCTACTT-CCCATAAC-ACATGTGTAG-CCATAT-AAAATT  245
      | |||||||||||||| |||||||| |||||||||| |||||| ||||||
seq2  TAATCAAAGGCTACTTCCCCATAACAACATGTGTAGCCCATATAAAAATT  237

seq1  TTATTGTGGAG-AAAGTTTTTATTTATTAAT-AAATACTATCACACATGA  293
      ||||||||||| ||||||||||||||||||| ||||||||||||||||||
seq2  TTATTGTGGAGAAAAGTTTTTATTTATTAATAAAATACTATCACACATGA  287

seq1  TTTATAAAGTAAAGCACTGGCTTT-CCCAGAGATAAGGTCATGTTAGTGA  342
      || ||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TTAATAAAGTAAAGCACTGGCTTTCCCCAGAGATAAGGTCATGTTAGTGA  337

seq1  CTCCATCTCAAGGGATGGTTTCTTACCCAATAGTCTCACTTAAGATCTTA  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCATCTCAAGGGATGGTTTCTTACCCAATAGTCTCACTTAAGATCTTA  387

seq1  GCCTAGGCTATCAAGAACATCTCATAAATAAGAAAAGAAATAAAAAAGAT  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTAGGCTATCAAGAACATCTCATAAATAAGAAAAGAAATAAAAAAGAT  437

seq1  AAAACAAGAAAGCTGCCAAGAGAACTACGGCTCAATATTTTATGCCTGCC  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAAGAAAGCTGCCAAGAGAACTACGGCTCAATATTTTATGCCTGCC  487

seq1  AAAAGTTCCACAACCAGTTCCAGGAGGCCTCCTTCTTTTAAAGTTTTTAC  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTTCCACAACCAGTTCCAGGAGGCCTCCTTCTTTTAAAGTTTTTAC  537

seq1  CTCAGTCTATAAAACTTGTCACACGGATCCTACTGGCGTTGGTGTGACAC  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTCTATAAAACTTGTCACACGGATCCTACTGGCGTTGGTGTGACAC  587

seq1  TCCAAATGAACTCCTCATGTCTACACAGAGAAACCCTGTCTCAAAAAACC  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAATGAACTCCTCATGTCTACACAGAGAAACCCTGTCTCAAAAAACC  637

seq1  AAAAATCAATCAATCAATCAATCAATCAATTAATATTAAAATAAAAAGAA  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATCAATCAATCAATCAATCAATCAATTAATATTAAAATAAAAAGAA  687

seq1  CATTTAGAAAAATGTAAGCAGAAAGATTGTGTAAGCAGGAGTATAGCCTT  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTAGAAAAATGTAAGCAGAAAGATTGTGTAAGCAGGAGTATAGCCTT  737

seq1  ACTTCTTGCTTGCCTGAGTCAGTATCAGCTACTCCCGACTTTACTAAGAT  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTTGCTTGCCTGAGTCAGTATCAGCTACTCCCGACTTTACTAAGAT  787

seq1  GCCTTTCTTACTGATCCATTTTGTTATCACTGAAATGAAGCACCTGAAGC  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTCTTACTGATCCATTTTGTTATCACTGAAATGAAGCACCTGAAGC  837

seq1  CGGTGAGCCTTAAAAAGAGAAGGGGTTTATCTGATGATCAGTTCTGGAAG  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTGAGCCTTAAAAAGAGAAGGGGTTTATCTGATGATCAGTTCTGGAAG  887

seq1  TTCAAAGACATGGCACTGACATCCACTCAACGTGGACAATAACAAAACCA  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAAGACATGGCACTGACATCCACTCAACGTGGACAATAACAAAACCA  937

seq1  TGTGTGGGTGTGAGCGATTGCCCCAGAACAGGAAGCCTAAGAGTAATTCA  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGGGTGTGAGCGATTGCCCCAGAACAGGAAGCCTAAGAGTAATTCA  987

seq1  GCGCCAGGCTCAGGCTTTAACAACAACTTGCTCTTAGCAGAACTCCAGGA  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCCAGGCTCAGGCTTTAACAACAACTTGCTCTTAGCAGAACTCCAGGA  1037

seq1  GACCAGAATTC  1053
      |||||||||||
seq2  GACCAGAATTC  1048