BAC Information

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BAC

Clone NameB6Ng01-014H15
Chromosome9 (Build37)
Map Location 29,114,924 - 29,216,634
singlet/doubletdoublet
Overlap geneHnt
Upstream geneOpcml, LOC625222
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-014H15.bB6Ng01-014H15.g
ACCDH849008DH849009
length1,1171,034
definitionDH849008|Mus musculus domesticus DNA, BAC clone: B6Ng01-014H15, 5' end.DH849009|Mus musculus domesticus DNA, BAC clone: B6Ng01-014H15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(29,215,504 - 29,216,634)(29,114,924 - 29,115,979)
sequence
gaattctaataataatcattatgaagttgctactattatcacattttaca
gatgagaaaacggaggcattggcatgaagaattagcctctcttggagaat
tttactgttaaatgaggagatggctttactgttaacgtgcttgctttgtt
cggaattcctgatggatccctagtctaacctctcctctcgcaggaaaaaa
aaattatttgatgaaggtggaatagctaggaatttttgaactgggtctag
caggaggttaactaatgatgatgttagtaagttgagtagtattatcactt
attgaccagcctctatagtactatgaactattacagttaatcttccctac
tctctgaaattcatttaattatctcccattttatggatgagagagttgag
actcaaagagcatcatttatctgaactcccagcagtagcaagcaacagaa
ctagaccatgtacattgagatttcccaagacttatcagggcccaataaac
accgtgtcttcctacttccccagtggggattaatgtctgccatcattttc
ttctttgtagtgttgtgtaactgtctttctgagtggcctgagtgtattat
gggagagcaaagatcacaccttttaacgtcatgagctccctcactaaaca
gatgagttaaaaacaaaacaaaacactcttcacgccttcccggatttctc
tgactttcttttgtatgttaacagtgatcaaacaataaagatttattgtg
tggttctctcaggaaaggtgcaaagccaagagatgaagtgtggaaggagt
cctgggtgcactcaccagggccagcctgtgaacaagataatccagattaa
tacatggggctaggatggcaacaggggaggctctgagcacagtgccccct
ggttggagggaggcttctcagtggttaggactgagaacagtagagatggt
actagtagctcagaacccatgatggctactgggctagtcagctcaagtac
aacttgagaaacatcagaatgcactcatggctctgcccagtgaggaactc
cactaataaacagctactacaagtgactatttcctgggtatgggagcaag
cagagactgtcttgctc
gaattctctctagttataaaacattttgttaccttcattcgctcttaatt
aaaatgaaaaggaaacccccagggctccaacaacagaaaaaaaaaatatg
gggagaaagaaactgaaagaaaaacaagaaaggggagagaggtttgaatt
gttgaaagcaaaaggctagagtacctgaagtagcaaggaagaaaggattt
taaaaaatgaactcactgaaatggttttaatctttctgagaaatgtggac
tctgggaaatattttcaggaagacgtttgtaatggaagaagaaagacaac
ggcttttcactctctgtattcacatctggctagccacaccctcctgccag
atggctcattctcttaacagttatctaccaaataccaccagggactcagg
actactcacacagtagcagacaggaggttaagaaaaataaagtcaacaat
attgatagttttaattttctgagccctacctgaggttacctgcagtatta
ggtcgttgacattttggttctcagattgcccctgcacggagggatcatga
ttttcagcatattggtggaaaacaaagtctctaacatactaaaattccca
tagtaaagtttactaagtatgtccagtgcctaaattggtatacttagtaa
aggggcataactgaatctctcccttgttgtacttaggctatggagtctcc
actgttgtgaaacttcctgttagaggcaaagaaaattttgagtttccagt
cccttaacttgatgagtacattcagatgagctctctcgccttgcatcatg
gaggcttcagaaggatgtgttgtactcctcttgaaatctctttttttttt
aatatttttttattaggtatttcctcatttacatttccaatgttatccga
aagtccccatacttccccacactcccctaccaccgatccacttttggcct
ggcgtttccctatactgggcatataaagtttgcagtccagtgggctcctt
caggatgccgactaggcagctttgaatacatata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_29215504_29216634
seq2: B6Ng01-014H15.b_42_1158 (reverse)

seq1  GAGCAGAGACAGTCTCTGGCTTGCTCCCATACCCAGGAAATAGTTCACTT  50
      ||||| ||||||||||| ||||||||||||||||||||||||| ||||  
seq2  GAGCA-AGACAGTCTCT-GCTTGCTCCCATACCCAGGAAATAG-TCAC--  45

seq1  TTGTAGTAGCTGTTTTATTAGTGGAAGGTTCCTCACTGGGCAGAGCCATT  100
      |||||||||||| ||||||||||||  ||||||||||||||||||||| |
seq2  TTGTAGTAGCTG-TTTATTAGTGGA--GTTCCTCACTGGGCAGAGCCA-T  91

seq1  GAGTGGCATTCTGATGTTTCCTCAAGGTTTGTACTTGAGCTTGACTAGCC  150
      |||| |||||||||||||| ||||||  |||||||||||| |||||||||
seq2  GAGT-GCATTCTGATGTTT-CTCAAG--TTGTACTTGAGC-TGACTAGCC  136

seq1  CAGTAGCCATCTTGGGTTCTGAGCTACTTAGTACCATCTCTACTTGTTCT  200
      ||||||||||| ||||||||||||||| ||||||||||||||| ||||||
seq2  CAGTAGCCATCATGGGTTCTGAGCTAC-TAGTACCATCTCTAC-TGTTCT  184

seq1  CAGTCCTAACCACTGAG-AGCCTCCCTCC-ACCAGGGGGCACTGTGCTCA  248
      ||||||||||||||||| ||||||||||| ||||||||||||||||||||
seq2  CAGTCCTAACCACTGAGAAGCCTCCCTCCAACCAGGGGGCACTGTGCTCA  234

seq1  GAGCCTCCCCTGTTGCCATCCTAGCCCCATGTATTAATCTGGATTATCTT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCTCCCCTGTTGCCATCCTAGCCCCATGTATTAATCTGGATTATCTT  284

seq1  GTTCACAGGCTGGCCCTGGTGAGTGCACCCAGGACTCCTTCCACACTTCA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCACAGGCTGGCCCTGGTGAGTGCACCCAGGACTCCTTCCACACTTCA  334

seq1  TCTCTTGGCTTTGCACCTTTCCTGAGAGAACCACACAATAAATCTTTATT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTGGCTTTGCACCTTTCCTGAGAGAACCACACAATAAATCTTTATT  384

seq1  GTTTGATCACTGTTAACATACAAAAGAAAGTCAGAGAAATCCGGGAAGGC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGATCACTGTTAACATACAAAAGAAAGTCAGAGAAATCCGGGAAGGC  434

seq1  GTGAAGAGTGTTTTGTTTTGTTTTTAACTCATCTGTTTAGTGAGGGAGCT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAGAGTGTTTTGTTTTGTTTTTAACTCATCTGTTTAGTGAGGGAGCT  484

seq1  CATGACGTTAAAAGGTGTGATCTTTGCTCTCCCATAATACACTCAGGCCA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGACGTTAAAAGGTGTGATCTTTGCTCTCCCATAATACACTCAGGCCA  534

seq1  CTCAGAAAGACAGTTACACAACACTACAAAGAAGAAAATGATGGCAGACA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGAAAGACAGTTACACAACACTACAAAGAAGAAAATGATGGCAGACA  584

seq1  TTAATCCCCACTGGGGAAGTAGGAAGACACGGTGTTTATTGGGCCCTGAT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATCCCCACTGGGGAAGTAGGAAGACACGGTGTTTATTGGGCCCTGAT  634

seq1  AAGTCTTGGGAAATCTCAATGTACATGGTCTAGTTCTGTTGCTTGCTACT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCTTGGGAAATCTCAATGTACATGGTCTAGTTCTGTTGCTTGCTACT  684

seq1  GCTGGGAGTTCAGATAAATGATGCTCTTTGAGTCTCAACTCTCTCATCCA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGGAGTTCAGATAAATGATGCTCTTTGAGTCTCAACTCTCTCATCCA  734

seq1  TAAAATGGGAGATAATTAAATGAATTTCAGAGAGTAGGGAAGATTAACTG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATGGGAGATAATTAAATGAATTTCAGAGAGTAGGGAAGATTAACTG  784

seq1  TAATAGTTCATAGTACTATAGAGGCTGGTCAATAAGTGATAATACTACTC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAGTTCATAGTACTATAGAGGCTGGTCAATAAGTGATAATACTACTC  834

seq1  AACTTACTAACATCATCATTAGTTAACCTCCTGCTAGACCCAGTTCAAAA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTACTAACATCATCATTAGTTAACCTCCTGCTAGACCCAGTTCAAAA  884

seq1  ATTCCTAGCTATTCCACCTTCATCAAATAATTTTTTTTTCCTGCGAGAGG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCTAGCTATTCCACCTTCATCAAATAATTTTTTTTTCCTGCGAGAGG  934

seq1  AGAGGTTAGACTAGGGATCCATCAGGAATTCCGAACAAAGCAAGCACGTT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGTTAGACTAGGGATCCATCAGGAATTCCGAACAAAGCAAGCACGTT  984

seq1  AACAGTAAAGCCATCTCCTCATTTAACAGTAAAATTCTCCAAGAGAGGCT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGTAAAGCCATCTCCTCATTTAACAGTAAAATTCTCCAAGAGAGGCT  1034

seq1  AATTCTTCATGCCAATGCCTCCGTTTTCTCATCTGTAAAATGTGATAATA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTTCATGCCAATGCCTCCGTTTTCTCATCTGTAAAATGTGATAATA  1084

seq1  GTAGCAACTTCATAATGATTATTATTAGAATTC  1131
      |||||||||||||||||||||||||||||||||
seq2  GTAGCAACTTCATAATGATTATTATTAGAATTC  1117

seq1: chr9_29114924_29115979
seq2: B6Ng01-014H15.g_66_1099

seq1  GAATTCTCTCTAGTTATAAAACATTTTGTTACCTTCATTCGCTCTTAATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTCTAGTTATAAAACATTTTGTTACCTTCATTCGCTCTTAATT  50

seq1  AAAATGAAAAGGAAACCCCCAGGGCTCCAACAACAGAAAAAAAAAATATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGAAAAGGAAACCCCCAGGGCTCCAACAACAGAAAAAAAAAATATG  100

seq1  GGGAGAAAGAAACTGAAAGAAAAACAAGAAAGGGGAGAGAGGTTTGAATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGAAAGAAACTGAAAGAAAAACAAGAAAGGGGAGAGAGGTTTGAATT  150

seq1  GTTGAAAGCAAAAGGCTAGAGTACCTGAAGTAGCAAGGAAGAAAGGATTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAAAGCAAAAGGCTAGAGTACCTGAAGTAGCAAGGAAGAAAGGATTT  200

seq1  TAAAAAATGAACTCACTGAAATGGTTTTAATCTTTCTGAGAAATGTGGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAATGAACTCACTGAAATGGTTTTAATCTTTCTGAGAAATGTGGAC  250

seq1  TCTGGGAAATATTTTCAGGAAGACGTTTGTAATGGAAGAAGAAAGACAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGAAATATTTTCAGGAAGACGTTTGTAATGGAAGAAGAAAGACAAC  300

seq1  GGCTTTTCACTCTCTGTATTCACATCTGGCTAGCCACACCCTCCTGCCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTTTCACTCTCTGTATTCACATCTGGCTAGCCACACCCTCCTGCCAG  350

seq1  ATGGCTCATTCTCTTAACAGTTATCTACCAAATACCACCAGGGACTCAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCTCATTCTCTTAACAGTTATCTACCAAATACCACCAGGGACTCAGG  400

seq1  ACTACTCACACAGTAGCAGACAGGAGGTTAAGAAAAATAAAGTCAACAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACTCACACAGTAGCAGACAGGAGGTTAAGAAAAATAAAGTCAACAAT  450

seq1  ATTGATAGTTTTAATTTTCTGAGCCCTACCTGAGGTTACCTGCAGTATTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGATAGTTTTAATTTTCTGAGCCCTACCTGAGGTTACCTGCAGTATTA  500

seq1  GGTCGTTGACATTTTGGTTCTCAGATTGCCCCTGCACGGAGGGATCATGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCGTTGACATTTTGGTTCTCAGATTGCCCCTGCACGGAGGGATCATGA  550

seq1  TTTTCAGCATATTGGTGGAAAACAAAGTCTCTAACATACTAAAATTCCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAGCATATTGGTGGAAAACAAAGTCTCTAACATACTAAAATTCCCA  600

seq1  TAGTAAAGTTTACTAAGTATGTCCAGTGCCTAAATTGGTATACTTAGTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAAAGTTTACTAAGTATGTCCAGTGCCTAAATTGGTATACTTAGTAA  650

seq1  AGGGGCATAACTGAATCTCTCCCTTGTTGTACTTAGGCTATGGAGTCTCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGCATAACTGAATCTCTCCCTTGTTGTACTTAGGCTATGGAGTCTCC  700

seq1  ACTGTTGTGAAACTTCCTGTTAGAGGCAAAGAAAATTTTGAGTTTCCAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTTGTGAAACTTCCTGTTAGAGGCAAAGAAAATTTTGAGTTTCCAGT  750

seq1  CCCTTAACTTGATGAGTACATTCAGATGAGCTCTCTCGCCTTGCATCATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTAACTTGATGAGTACATTCAGATGAGCTCTCTCGCCTTGCATCATG  800

seq1  GAGGCTTCAGAAGGAATGTGTTTGTACTCCTCTTGAGATCTTCTTTTTTT  850
      |||||||||||||| ||||| ||||||||||||||| |   ||| |||||
seq2  GAGGCTTCAGAAGG-ATGTG-TTGTACTCCTCTTGAAA---TCTCTTTTT  845

seq1  TTTTTAATA-TTTTTTATTAGGTATTTTCCTCATTTACATTTCCAATGTT  899
      ||||||||| |||||||||||||| |||||||||||||||||||||||||
seq2  TTTTTAATATTTTTTTATTAGGTA-TTTCCTCATTTACATTTCCAATGTT  894

seq1  ATCCCGAAAGTCCCCCATACCCTCCCCACACTCCCCTACCCACCCACTCC  949
      || |||||||| ||||||| | |||||||||||||||| ||||| |   |
seq2  AT-CCGAAAGT-CCCCATA-CTTCCCCACACTCCCCTA-CCACCGA--TC  938

seq1  CACTTTTTGGCCCTGGCGTTTCCCTATACTGGGGCATATAAAGTTTGCAA  999
      |||||||  | ||||||||||||||||||| ||||||||||||||||| |
seq2  CACTTTT--GGCCTGGCGTTTCCCTATACT-GGGCATATAAAGTTTGC-A  984

seq1  GTCCAGTGGGCCTCTCTTTCCAGTGATGGCCGACTAGGCCAGCTTTTGAT  1049
      ||||||||||   ||| || ||| ||| |||||||||| |||||||  ||
seq2  GTCCAGTGGG---CTCCTT-CAG-GAT-GCCGACTAGG-CAGCTTTGAAT  1027

seq1  ACATATA  1056
      |||||||
seq2  ACATATA  1034