BAC Information

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BAC

Clone NameB6Ng01-016A05
Chromosome9 (Build37)
Map Location 16,581,476 - 16,582,626
singlet/doubletsinglet
Overlap genenone
Upstream geneMtnr1b, Fat3
Downstream geneEG434373, LOC100040074, LOC100040090, LOC244710
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-016A05.bB6Ng01-016A05.g
ACCDH850114DH850115
length1,129520
definitionDH850114|Mus musculus domesticus DNA, BAC clone: B6Ng01-016A05, 5' end.DH850115|Mus musculus domesticus DNA, BAC clone: B6Ng01-016A05, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcaacagtgaatgctactgaggtgaaaggaaagacgtgcttgcata
cagctgttgggaacgcagactagagcagccacatagttaaggttaccatt
tctgcagtgacacaacatgactaaaagcaagttgggaggagaggatttat
ttagcttttacttccacaccacatcatatcaatgaagaaggcaggacaga
aacccaaacagggcaggaagctagaggccggggctgatgcagaggccttg
tgggagggctgcttcttagatgtttgcttagcctcctgtcttatggaatg
tagggcttgcatcccagatatgggaccacacacagtggcttggtcctctt
ctactaatcactaattaataaaatgacctataggcttgcctacagactga
tcaaatggcagcattttcttaactgaggttccctcctctcagatgatttt
agcttgggtaacatagacataaagctattcagaaaaaaacactgtggtaa
cttccacaagggttccttggaaaactaaaagtggaattaagatatagttc
agcaatatcattgttgggtagttgtacaaagaatccaagacaccatggtg
atacctataaatggatattttgggcagcactataacaactctcattatag
ataagaacagatgtctcccaacaattgaaggtatgaagaatatatatcac
tcatgttacacacacacacacacacacacacgtgtttgtgtgtgtgtaac
atgagtgtcttatatattattttctaattttgtgagagacaaaaattagt
tatgcagctatgggtaccaacagggatgactgtttctgtcaagccaatgg
ggactcagtttttatggtagcaagagctataacaggaaagaaatggacct
ggtagaaattgtttgtggttttgcccagacaaattggtggttatatcaaa
gcctaattatcaggagcaggagctgagtatctagcctagctgctttacac
ctacagtagagttagacttggtcagtggtcagctatagatatctatagta
tttttttttttttttttgggtttcgagacagggttgataaaaattttaaa
caaggcggtaaggtctcttatacctaatc

tttgtttagctttgtaccccattttaaaatagggttatttgattttctgg
agtccatcttcttgagctccttatatatattggatattagtcccctatct
gatttaggattggtaaaaatcctttcccaatctgttcatagcctttttgc
cttattgaccatgtcttttgccttacagaagctttgcaattttatgaggt
cccatttgttgattctctatctcacagcacaagccattgttgttctgttc
agaaatctttcccttgtgtccatatcttcaaggcttttccccactttctc
ctctataagtttcagagtctctggttttatgtggagttccttgatccact
tagtcttgagctttgtacagctgtgtctctagttgtatatgtagcagagg
atggcctagtcagccttcaatgagaggagaggctcttggtcttgcaaaga
tcatttgccctagtacaggagaatgccagggccaggaagtgggagtgagt
tggttggggagcagggtggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_16581476_16582626
seq2: B6Ng01-016A05.b_41_1169

seq1  GAATTCAACAGTGAATGCTACTGAGGTGAAAGGAAAGACGTGCTTGCATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACAGTGAATGCTACTGAGGTGAAAGGAAAGACGTGCTTGCATA  50

seq1  CAGCTGTTGGGAACGCAGACTAGAGCAGCCACATAGTTAAGGTTACCATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGTTGGGAACGCAGACTAGAGCAGCCACATAGTTAAGGTTACCATT  100

seq1  TCTGCAGTGACACAACATGACTAAAAGCAAGTTGGGAGGAGAGGATTTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCAGTGACACAACATGACTAAAAGCAAGTTGGGAGGAGAGGATTTAT  150

seq1  TTAGCTTTTACTTCCACACCACATCATATCAATGAAGAAGGCAGGACAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCTTTTACTTCCACACCACATCATATCAATGAAGAAGGCAGGACAGA  200

seq1  AACCCAAACAGGGCAGGAAGCTAGAGGCCGGGGCTGATGCAGAGGCCTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCAAACAGGGCAGGAAGCTAGAGGCCGGGGCTGATGCAGAGGCCTTG  250

seq1  TGGGAGGGCTGCTTCTTAGATGTTTGCTTAGCCTCCTGTCTTATGGAATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGGGCTGCTTCTTAGATGTTTGCTTAGCCTCCTGTCTTATGGAATG  300

seq1  TAGGGCTTGCATCCCAGATATGGGACCACACACAGTGGCTTGGTCCTCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGCTTGCATCCCAGATATGGGACCACACACAGTGGCTTGGTCCTCTT  350

seq1  CTACTAATCACTAATTAATAAAATGACCTATAGGCTTGCCTACAGACTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTAATCACTAATTAATAAAATGACCTATAGGCTTGCCTACAGACTGA  400

seq1  TCAAATGGCAGCATTTTCTTAACTGAGGTTCCCTCCTCTCAGATGATTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATGGCAGCATTTTCTTAACTGAGGTTCCCTCCTCTCAGATGATTTT  450

seq1  AGCTTGGGTAACATAGACATAAAGCTATTCAGAAAAAAACACTGTGGTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTGGGTAACATAGACATAAAGCTATTCAGAAAAAAACACTGTGGTAA  500

seq1  CTTCCACAAGGGTTCCTTGGAAAACTAAAAGTGGAATTAAGATATAGTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCACAAGGGTTCCTTGGAAAACTAAAAGTGGAATTAAGATATAGTTC  550

seq1  AGCAATATCATTGTTGGGTAGTTGTACAAAGAATCCAAGACACCATGGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAATATCATTGTTGGGTAGTTGTACAAAGAATCCAAGACACCATGGTG  600

seq1  ATACCTATAAATGGATATTTTGGGCAGCACTATAACAACTCTCATTATAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCTATAAATGGATATTTTGGGCAGCACTATAACAACTCTCATTATAG  650

seq1  ATAAGAACAGATGTCTCCCAACAATTGAAGGTATGAAGAATATATATCAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGAACAGATGTCTCCCAACAATTGAAGGTATGAAGAATATATATCAC  700

seq1  TCATGTTACACACACACACACACACACACACGTGTTTGTGTGTGTGTAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTTACACACACACACACACACACACACGTGTTTGTGTGTGTGTAAC  750

seq1  ATGAGTGTCTTATATATTATTTTCTAATTTTGTGAGAGACAAAAATTAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGTGTCTTATATATTATTTTCTAATTTTGTGAGAGACAAAAATTAGT  800

seq1  TATGCAGCTATGGGTACCAACAGGGATGACTGTTTCTGTCAAGCCAATGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCAGCTATGGGTACCAACAGGGATGACTGTTTCTGTCAAGCCAATGG  850

seq1  GGACTCAGTTTTTATGGTAGCAAGAGCTATAACAGGAAAGAAATGGACCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTCAGTTTTTATGGTAGCAAGAGCTATAACAGGAAAGAAATGGACCT  900

seq1  GGTAGAAATTGTTTGTGGTTTTGCCCAGACAAATTGGTGGTTATATTCAA  950
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  GGTAGAAATTGTTTGTGGTTTTGCCCAGACAAATTGGTGGTTATA-TCAA  949

seq1  AGCCTAATTATCAGGAGCAAGGAGCTGAGTATTCTAGGCCTAGGCTGCTT  1000
      |||||||||||||||||| |||||||||||| |||| ||||| |||||||
seq2  AGCCTAATTATCAGGAGC-AGGAGCTGAGTA-TCTA-GCCTA-GCTGCTT  995

seq1  TAACACCTACAGGTAGAGTTAAGAACTTGGTTCAGTTGGTTCAGCTATAG  1050
      | ||||||||| |||||||||   |||||| |||||  | ||||||||||
seq2  T-ACACCTACA-GTAGAGTTA--GACTTGG-TCAGT--GGTCAGCTATAG  1038

seq1  ATAATCTTAATAGTAATTTTTTTTTTTTTTTTTTTTGGTTTTTCGAGACA  1100
      || ||||  ||||||    |||||||||||||||||||  ||||||||||
seq2  AT-ATCT--ATAGTA----TTTTTTTTTTTTTTTTTGG-GTTTCGAGACA  1080

seq1  GGGTTGATAAGACATTTTAAACAAGGCTGTAATGTTCTCTATTACCTAAT  1150
      |||||||||| | |||||||||||||| |||| | |||||  ||||||||
seq2  GGGTTGATAA-AAATTTTAAACAAGGCGGTAA-GGTCTCTTATACCTAAT  1128

seq1  C  1151
      |
seq2  C  1129


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