BAC Information

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BAC

Clone NameB6Ng01-016B20
Chromosome9 (Build37)
Map Location 95,682,684 - 95,726,118
singlet/doubletdoublet
Overlap geneAI427122
Upstream geneSlc9a9, Chst2, LOC667088, 2610101N10Rik, LOC100040097, Paqr9, Pcolce2, Trpc1
Downstream gene1700065D16Rik, Xrn1, Gk5, Tfdp2, 1110029I05Rik, Atp1b3, BC043934, Rnf7, LOC667174, Rasa2, Zbtb38, EG622512, LOC100040230, LOC667216, Acpl2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-016B20.bB6Ng01-016B20.g
ACCDH850185DH850186
length1,0861,128
definitionDH850185|Mus musculus domesticus DNA, BAC clone: B6Ng01-016B20, 5' end.DH850186|Mus musculus domesticus DNA, BAC clone: B6Ng01-016B20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(95,725,028 - 95,726,118)(95,682,684 - 95,683,816)
sequence
gaattcagcctgtgcagttagctgcacaccttttgactgctaacaaaggg
gaagctggccagctttgcctggcccactgctccattgtgttggactgtga
atcagtaactctggccaccagtctcctgaaaggacagaaaagtgaactga
aatatttagtgaaaataaaatgctataaatgagttttgccataagcccat
aaaatttccagtgtgtctgcagttaatcgatttagcaatttgatttccat
ttccagacgtggcttcatctttcaattcttcaggtgggagccctaatgat
caaactgatgggttaaccccatagccttgtgtttggtctctttctgtgcc
tggctctcagtgcttttcattcaccgaggagggaagatctgtcatgcaca
caggtgacccacaccttcccatgggacgaggtcttggactgaataaagca
gaaaaacacactcttatctttctctgcttcctgtctgtataggcaacgtg
atcagtcaccttctgtcctgccacctactgtccctgtcatgacagaacgt
atcctcaaactgggtcagaatactaccctcccccccccattactagtagc
taatagagatccatatatatgcaatttaagattgtgcacatctgttggcc
gctatttctcaatgtaagtctaacactgactaagctcatagcttattttg
gttttgtttttgtaaaacaagtgctctaaactaattctcttcaggtgctt
ttaatgctacttttccataaaaatgcactacatgcctggcatggtagcgt
gtgctgtactctagtaccaaggaaggtgaaaaggtggatcaggacgctga
gggtctcattgggaggtccaggtcagccggggctgcgcagtgagaccctg
actctacaaacaaaacactgacactcaagtttctcatctggtgaggagaa
ggagagaaaggagagggaaaaacattgatgacgtgaaatgctccagtagg
gactattgctgtgatggaagaccatgaccaaacttggaaaggaaggctta
cttggattctgttccacatcactgctattattgaag
gaattcttttcacatttttttaaatgacaggttgtgtttaaatccccagc
accacggacagctttgagcacagtcacacattgccagcaagaggcaggta
ctcaccgacaccgtgaacggagtgagcttcttcttattgatggctctctc
gtcaatcgtatctggctcggataagttgatcattttgctgaagagagaac
aggaaccatttagccgaaactttctagaaatgtttttaattcatcgtggc
aaagcaatccgattggttactttagaaaagaatagcctttctatcttact
gagcagccgttcgtgtcaggtacgtcattagaaaacttcagacagctgtc
tgtctgagcccatcactgccttctacagtggcccgcctccactcgctgca
tcggaatctccactgtttcctcagatggaaacagattaactacccaagac
aaatcctgaaacttccggcttccatggacgtcaacacactatgaattgtg
ttgtctcagaaggtgaaggagcaaacgccttggttgaggacttcaataat
ttagacattttagcgggacagtggtgccacatacccttaaatttcagcag
tagggaggcagaggcaggtggatctctgactttgaggccagcctggtcta
tgtatcaagttctaagacagtcagggctacacagggaaactatcttgaaa
aatcaaaaaggaaaaagaaatttacacattttaaaaagaaaaaatatgga
tttttgtctctatgtttcagaatataaaaataagaaagtagttttggctc
atagtcagacattctctaaaagttgggggaagagaaaaaaatataaatga
aaactaaagtatattttatagatactgattttcctatatttatagaaagg
ttcagggattttaatttcctttttaaataaatacacaacacacacacaca
cacacacacactcacacacactaaccagcctgaagacaacattgccagtg
cttgagttagtcacagtgctctgggtatttgtgatatgcattttctttgt
aattgactatatattttttttaataaaaaaaataaaggacacttgcatgg
aaaagattgtgctggactggtactagcg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_95725028_95726118
seq2: B6Ng01-016B20.b_43_1128 (reverse)

seq1  CTTCAATAATAGCAGTGATGTGGGAACAGAAACCAAGTAAGCCCTTCCCT  50
      ||||||||||||||||||||| ||||||||| |||||||||||  | |||
seq2  CTTCAATAATAGCAGTGATGT-GGAACAGAATCCAAGTAAGCC--TTCCT  47

seq1  TTCCAAGTTTGGTCATGGTCTTCCATCACAGCAATAGTCCCCTAACTGGG  100
      |||||||||||||||||||||||||||||||||||||||||   ||||| 
seq2  TTCCAAGTTTGGTCATGGTCTTCCATCACAGCAATAGTCCC--TACTGGA  95

seq1  GCATTTCACGTCATCAATGTTTTTCCCTCTCCTTTCTCTCCTTCTCCTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTCACGTCATCAATGTTTTTCCCTCTCCTTTCTCTCCTTCTCCTCA  145

seq1  CCAGATGAGAAACTTGAGTGTCAGTGTTTTGTTTGTAGAGTCAGGGTCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGATGAGAAACTTGAGTGTCAGTGTTTTGTTTGTAGAGTCAGGGTCTC  195

seq1  ACTGCGCAGCCCCGGCTGACCTGGACCTCCCAATGAGACCCTCAGCGTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCGCAGCCCCGGCTGACCTGGACCTCCCAATGAGACCCTCAGCGTCC  245

seq1  TGATCCACCTTTTCACCTTCCTTGGTACTAGAGTACAGCACACGCTACCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCCACCTTTTCACCTTCCTTGGTACTAGAGTACAGCACACGCTACCA  295

seq1  TGCCAGGCATGTAGTGCATTTTTATGGAAAAGTAGCATTAAAAGCACCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAGGCATGTAGTGCATTTTTATGGAAAAGTAGCATTAAAAGCACCTG  345

seq1  AAGAGAATTAGTTTAGAGCACTTGTTTTACAAAAACAAAACCAAAATAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAATTAGTTTAGAGCACTTGTTTTACAAAAACAAAACCAAAATAAG  395

seq1  CTATGAGCTTAGTCAGTGTTAGACTTACATTGAGAAATAGCGGCCAACAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGAGCTTAGTCAGTGTTAGACTTACATTGAGAAATAGCGGCCAACAG  445

seq1  ATGTGCACAATCTTAAATTGCATATATATGGATCTCTATTAGCTACTAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGCACAATCTTAAATTGCATATATATGGATCTCTATTAGCTACTAGT  495

seq1  AATGGGGGGGGGAGGGTAGTATTCTGACCCAGTTTGAGGATACGTTCTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGGGGGGGGAGGGTAGTATTCTGACCCAGTTTGAGGATACGTTCTGT  545

seq1  CATGACAGGGACAGTAGGTGGCAGGACAGAAGGTGACTGATCACGTTGCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGACAGGGACAGTAGGTGGCAGGACAGAAGGTGACTGATCACGTTGCC  595

seq1  TATACAGACAGGAAGCAGAGAAAGATAAGAGTGTGTTTTTCTGCTTTATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACAGACAGGAAGCAGAGAAAGATAAGAGTGTGTTTTTCTGCTTTATT  645

seq1  CAGTCCAAGACCTCGTCCCATGGGAAGGTGTGGGTCACCTGTGTGCATGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCCAAGACCTCGTCCCATGGGAAGGTGTGGGTCACCTGTGTGCATGA  695

seq1  CAGATCTTCCCTCCTCGGTGAATGAAAAGCACTGAGAGCCAGGCACAGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATCTTCCCTCCTCGGTGAATGAAAAGCACTGAGAGCCAGGCACAGAA  745

seq1  AGAGACCAAACACAAGGCTATGGGGTTAACCCATCAGTTTGATCATTAGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACCAAACACAAGGCTATGGGGTTAACCCATCAGTTTGATCATTAGG  795

seq1  GCTCCCACCTGAAGAATTGAAAGATGAAGCCACGTCTGGAAATGGAAATC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCCACCTGAAGAATTGAAAGATGAAGCCACGTCTGGAAATGGAAATC  845

seq1  AAATTGCTAAATCGATTAACTGCAGACACACTGGAAATTTTATGGGCTTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGCTAAATCGATTAACTGCAGACACACTGGAAATTTTATGGGCTTA  895

seq1  TGGCAAAACTCATTTATAGCATTTTATTTTCACTAAATATTTCAGTTCAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAAAACTCATTTATAGCATTTTATTTTCACTAAATATTTCAGTTCAC  945

seq1  TTTTCTGTCCTTTCAGGAGACTGGTGGCCAGAGTTACTGATTCACAGTCC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTGTCCTTTCAGGAGACTGGTGGCCAGAGTTACTGATTCACAGTCC  995

seq1  AACACAATGGAGCAGTGGGCCAGGCAAAGCTGGCCAGCTTCCCCTTTGTT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACAATGGAGCAGTGGGCCAGGCAAAGCTGGCCAGCTTCCCCTTTGTT  1045

seq1  AGCAGTCAAAAGGTGTGCAGCTAACTGCACAGGCTGAATTC  1091
      |||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGTCAAAAGGTGTGCAGCTAACTGCACAGGCTGAATTC  1086

seq1: chr9_95682684_95683816
seq2: B6Ng01-016B20.g_66_1193

seq1  GAATTCTTTTCACATTTTTTTAAATGACAGGTTGTGTTTAAATCCCCAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTCACATTTTTTTAAATGACAGGTTGTGTTTAAATCCCCAGC  50

seq1  ACCACGGACAGCTTTGAGCACAGTCACACATTGCCAGCAAGAGGCAGGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACGGACAGCTTTGAGCACAGTCACACATTGCCAGCAAGAGGCAGGTA  100

seq1  CTCACCGACACCGTGAACGGAGTGAGCTTCTTCTTATTGATGGCTCTCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACCGACACCGTGAACGGAGTGAGCTTCTTCTTATTGATGGCTCTCTC  150

seq1  GTCAATCGTATCTGGCTCGGATAAGTTGATCATTTTGCTGAAGAGAGAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAATCGTATCTGGCTCGGATAAGTTGATCATTTTGCTGAAGAGAGAAC  200

seq1  AGGAACCATTTAGCCGAAACTTTCTAGAAATGTTTTTAATTCATCGTGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAACCATTTAGCCGAAACTTTCTAGAAATGTTTTTAATTCATCGTGGC  250

seq1  AAAGCAATCCGATTGGTTACTTTAGAAAAGAATAGCCTTTCTATCTTACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCAATCCGATTGGTTACTTTAGAAAAGAATAGCCTTTCTATCTTACT  300

seq1  GAGCAGCCGTTCGTGTCAGGTACGTCATTAGAAAACTTCAGACAGCTGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGCCGTTCGTGTCAGGTACGTCATTAGAAAACTTCAGACAGCTGTC  350

seq1  TGTCTGAGCCCATCACTGCCTTCTACAGTGGCCCGCCTCCACTCGCTGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGAGCCCATCACTGCCTTCTACAGTGGCCCGCCTCCACTCGCTGCA  400

seq1  TCGGAATCTCCACTGTTTCCTCAGATGGAAACAGATTAACTACCCAAGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGAATCTCCACTGTTTCCTCAGATGGAAACAGATTAACTACCCAAGAC  450

seq1  AAATCCTGAAACTTCCGGCTTCCATGGACGTCAACACACTATGAATTGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCCTGAAACTTCCGGCTTCCATGGACGTCAACACACTATGAATTGTG  500

seq1  TTGTCTCAGAAGGTGAAGGAGCAAACGCCTTGGTTGAGGACTTCAATAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTCAGAAGGTGAAGGAGCAAACGCCTTGGTTGAGGACTTCAATAAT  550

seq1  TTAGACATTTTAGCGGGACAGTGGTGCCACATACCCTTAAATTTCAGCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGACATTTTAGCGGGACAGTGGTGCCACATACCCTTAAATTTCAGCAG  600

seq1  TAGGGAGGCAGAGGCAGGTGGATCTCTGACTTTGAGGCCAGCCTGGTCTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGAGGCAGAGGCAGGTGGATCTCTGACTTTGAGGCCAGCCTGGTCTA  650

seq1  TGTATCAAGTTCTAAGACAGTCAGGGCTACACAGGGAAACTATCTTGAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATCAAGTTCTAAGACAGTCAGGGCTACACAGGGAAACTATCTTGAAA  700

seq1  AATCAAAAAGGAAAAAGAAATTTACACATTTTAAAAAGAAAAAATATGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAAAAAGGAAAAAGAAATTTACACATTTTAAAAAGAAAAAATATGGA  750

seq1  TTTTTGTCTCTATGTTTCAGAATATAAAAATAAGAAAGTAGTTTTGGCTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGTCTCTATGTTTCAGAATATAAAAATAAGAAAGTAGTTTTGGCTC  800

seq1  ATAGTCAGACATTCTCTAAAAGTTGGGGGAAGAGAAAAAAATATAAATGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTCAGACATTCTCTAAAAGTTGGGGGAAGAGAAAAAAATATAAATGA  850

seq1  AAACTAAAGTATATTTTATAGATACTGA-TTTCCTATATTTATAGGAAGG  899
      |||||||||||||||||||||||||||| |||||||||||||||| ||||
seq2  AAACTAAAGTATATTTTATAGATACTGATTTTCCTATATTTATAGAAAGG  900

seq1  TTCAGGGATTTT-ATTTCCTTTTTAAATAAATACACAACACACACACACA  948
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TTCAGGGATTTTAATTTCCTTTTTAAATAAATACACAACACACACACACA  950

seq1  CACACACACACACACACACACAAAACAACCCTGAAGACAACA-TGCCAGG  997
      ||||||||||| |||||||||  ||| | ||||||||||||| ||||| |
seq2  CACACACACACTCACACACAC-TAACCAGCCTGAAGACAACATTGCCA-G  998

seq1  TGC-TGAGTTAGTCACAGGTGCTCTGGGTATTTGTGATATGCATTTTCTT  1046
      ||| ||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TGCTTGAGTTAGTCACA-GTGCTCTGGGTATTTGTGATATGCATTTTCTT  1047

seq1  TGTAATTGTACTATATATTTTTTTTTAATTAAAAAAAATAAA-GACAC-T  1094
      |||||||| ||||||||||||||||  | ||||||||||||| ||||| |
seq2  TGTAATTG-ACTATATATTTTTTTT--AATAAAAAAAATAAAGGACACTT  1094

seq1  GCATTGTATAAAGATGTGTGCTGGGACTTGGTACTAGCG  1133
      |||| |   |||||| |||||| |||| |||||||||||
seq2  GCATGG--AAAAGAT-TGTGCT-GGAC-TGGTACTAGCG  1128