BAC Information

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BAC

Clone NameB6Ng01-016N06
Chromosome9 (Build37)
Map Location 89,648,778 - 89,767,463
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100039674, EG666731, LOC100039741, Bcl2a1a, LOC100039689, EG666747, LOC100039714, 4930579C12Rik, Bcl2a1b, Mthfs, AF529169, Tmed3, B230218L05Rik
Downstream geneRasgrf1, Ctsh, Morf4l1, LOC621414, Adamts7, Tbc1d2b, LOC100039777, LOC100039925
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-016N06.bB6Ng01-016N06.g
ACCDH850681DH850682
length808900
definitionDH850681|Mus musculus domesticus DNA, BAC clone: B6Ng01-016N06, 5' end.DH850682|Mus musculus domesticus DNA, BAC clone: B6Ng01-016N06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(89,648,778 - 89,649,585)(89,766,567 - 89,767,463)
sequence
gaattccttagtggctatatcactttgcactccaacagagaatatgtgtt
gcttttccccggtgccactccaccattaataatcatctgtgttaataacc
ttcattattctgcatgaaataagataaaatcttaaagttgttttaattat
catttccctgatggctaatggtgttggacattgtaaacatatttctcaat
tattagtattttatcctttgagaacacttcatttagttctatgccataat
tttaattggattgttctttttttactttgttatagaaaaaaagagcttgt
taaataaataaagaacatcatacacaaaaattaaccagctccaaagaccg
tgcaatataatgaacttacaagcaattacaattgacactccaaaatggga
tctgtgaagcttgtgctatatttatgcatttatccacaccaaaacaaaac
aaaacaaaatctatgacagaattagaactagaaaaacgtatgcctgcatt
cagttcttctgtagtgcctcatatttagctttccttgttcccttttgttc
gctgtatactgtacccaaaaaagtacagtatatataagtacagtatatat
atataatctagccatatatatatatggctagattccacacacaagtgaga
acgtgtgccttgttctttctgagatggtgtgacttctcttaatatacatc
tgagctcccctatttctctgtaaaattttaacttcacttacctttagaac
tgagtaatatgtgtgtgtgtgcacgcgcgtgcgtgtgtgtgtgtgtgtgt
gtgtgcgc
gaattccaggtcactgagagaccctatattaaaccaagaccaaaaacagg
gatggcacctgaggaacacataaaagttatattgtggcctacactcatat
atacacatgtgcatgtgcaccccctacataaacacataaacacacacaca
cacacacacacacacactccacatgaagaacatggcttcccacgtccaat
tgcggtcccagccaaatcatcgccaagtggattagaataacaccaacttt
tgctaccatggcaactgctgttggttgcgcaattgctgacttttgaagct
acttaaaaatgtgcaaaccgttttgcataaagtggctttacatctcccag
agcagtggtttccatttcccctcgagacttcccctcaagaaaatttacct
cttttctcccttagaaacatttcataatttctatttccaaaggattattt
aaaaataaagtccaccaaaatagtttccttatgctcatggaggagcaaat
ataaattaaaaaatgagaaacttaattctttcagttgagaccagggactc
ctggcgcccttcttttacagcatttgctttagaagacaggactttttctt
gtctttttttttttttttttgaaatctacataaatcttttaaacaccaaa
atattcccttgccagctctgttgctcatagacccaggaaagtttcctttt
aagaattggggatcaatcatcactttgaaatgtaatgaccagagaagaca
gtgtcctaggtgccctagggtagccaccaactctccagactccaagcctg
ccttataaactttgaagacctgagttcaaatctctagacccccacataaa
gcctagcatgcatggaagggtctagaatcccaatgctctccctgtcagag

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_89648778_89649585
seq2: B6Ng01-016N06.b_45_852

seq1  GAATTCCTTAGTGGCTATATCACTTTGCACTCCAACAGAGAATATGTGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTAGTGGCTATATCACTTTGCACTCCAACAGAGAATATGTGTT  50

seq1  GCTTTTCCCCGGTGCCACTCCACCATTAATAATCATCTGTGTTAATAACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTCCCCGGTGCCACTCCACCATTAATAATCATCTGTGTTAATAACC  100

seq1  TTCATTATTCTGCATGAAATAAGATAAAATCTTAAAGTTGTTTTAATTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTATTCTGCATGAAATAAGATAAAATCTTAAAGTTGTTTTAATTAT  150

seq1  CATTTCCCTGATGGCTAATGGTGTTGGACATTGTAAACATATTTCTCAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCCCTGATGGCTAATGGTGTTGGACATTGTAAACATATTTCTCAAT  200

seq1  TATTAGTATTTTATCCTTTGAGAACACTTCATTTAGTTCTATGCCATAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAGTATTTTATCCTTTGAGAACACTTCATTTAGTTCTATGCCATAAT  250

seq1  TTTAATTGGATTGTTCTTTTTTTACTTTGTTATAGAAAAAAAGAGCTTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATTGGATTGTTCTTTTTTTACTTTGTTATAGAAAAAAAGAGCTTGT  300

seq1  TAAATAAATAAAGAACATCATACACAAAAATTAACCAGCTCCAAAGACCG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAAATAAAGAACATCATACACAAAAATTAACCAGCTCCAAAGACCG  350

seq1  TGCAATATAATGAACTTACAAGCAATTACAATTGACACTCCAAAATGGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAATATAATGAACTTACAAGCAATTACAATTGACACTCCAAAATGGGA  400

seq1  TCTGTGAAGCTTGTGCTATATTTATGCATTTATCCACACCAAAACAAAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGAAGCTTGTGCTATATTTATGCATTTATCCACACCAAAACAAAAC  450

seq1  AAAACAAAATCTATGACAGAATTAGAACTAGAAAAACGTATGCCTGCATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAAAATCTATGACAGAATTAGAACTAGAAAAACGTATGCCTGCATT  500

seq1  CAGTTCTTCTGTAGTGCCTCATATTTAGCTTTCCTTGTTCCCTTTTGTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTCTTCTGTAGTGCCTCATATTTAGCTTTCCTTGTTCCCTTTTGTTC  550

seq1  GCTGTATACTGTACCCAAAAAAGTACAGTATATATAAGTACAGTATATAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTATACTGTACCCAAAAAAGTACAGTATATATAAGTACAGTATATAT  600

seq1  ATATAATCTAGCCATATATATATATGGCTAGATTCCACACACAAGTGAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAATCTAGCCATATATATATATGGCTAGATTCCACACACAAGTGAGA  650

seq1  ACGTGTGCCTTGTTCTTTCTGAGATGGTGTGACTTCTCTTAATATACATC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTGTGCCTTGTTCTTTCTGAGATGGTGTGACTTCTCTTAATATACATC  700

seq1  TGAGCTCCCCTATTTCTCTGTAAAATTTTAACTTCACTTACCTTTAGAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCTCCCCTATTTCTCTGTAAAATTTTAACTTCACTTACCTTTAGAAC  750

seq1  TGAGTAATATGTGTGTGTGTGCACGCGCGTGCGTGTGTGTGTGTGTGTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTAATATGTGTGTGTGTGCACGCGCGTGCGTGTGTGTGTGTGTGTGT  800

seq1  GTGTGCGC  808
      ||||||||
seq2  GTGTGCGC  808

seq1: chr9_89766567_89767463
seq2: B6Ng01-016N06.g_69_968 (reverse)

seq1  CTCTG-CAGGGAGAGCATTGGGATTCTAGACCC-TCCATGCATGCTAGGC  48
      ||||| ||||||||||||||||||||||||||| ||||||||||||||||
seq2  CTCTGACAGGGAGAGCATTGGGATTCTAGACCCTTCCATGCATGCTAGGC  50

seq1  TTTATGTGGGGGTCTAGAGATTTGAACTCAGGTCTTC-AAGTTTATAAGG  97
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TTTATGTGGGGGTCTAGAGATTTGAACTCAGGTCTTCAAAGTTTATAAGG  100

seq1  CAGGCTTGGAGTCTGGAGAGTTGGTGGCTACCCTAGGGCACCTAGGACAC  147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTTGGAGTCTGGAGAGTTGGTGGCTACCCTAGGGCACCTAGGACAC  150

seq1  TGTCTTCTCTGGTCATTACATTTCAAAGTGATGATTGATCCCCAATTCTT  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTCTCTGGTCATTACATTTCAAAGTGATGATTGATCCCCAATTCTT  200

seq1  AAAAGGAAACTTTCCTGGGTCTATGAGCAACAGAGCTGGCAAGGGAATAT  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGAAACTTTCCTGGGTCTATGAGCAACAGAGCTGGCAAGGGAATAT  250

seq1  TTTGGTGTTTAAAAGATTTATGTAGATTTCAAAAAAAAAAAAAAAAAGAC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTGTTTAAAAGATTTATGTAGATTTCAAAAAAAAAAAAAAAAAGAC  300

seq1  AAGAAAAAGTCCTGTCTTCTAAAGCAAATGCTGTAAAAGAAGGGCGCCAG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAAAGTCCTGTCTTCTAAAGCAAATGCTGTAAAAGAAGGGCGCCAG  350

seq1  GAGTCCCTGGTCTCAACTGAAAGAATTAAGTTTCTCATTTTTTAATTTAT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCCCTGGTCTCAACTGAAAGAATTAAGTTTCTCATTTTTTAATTTAT  400

seq1  ATTTGCTCCTCCATGAGCATAAGGAAACTATTTTGGTGGACTTTATTTTT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGCTCCTCCATGAGCATAAGGAAACTATTTTGGTGGACTTTATTTTT  450

seq1  AAATAATCCTTTGGAAATAGAAATTATGAAATGTTTCTAAGGGAGAAAAG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAATCCTTTGGAAATAGAAATTATGAAATGTTTCTAAGGGAGAAAAG  500

seq1  AGGTAAATTTTCTTGAGGGGAAGTCTCGAGGGGAAATGGAAACCACTGCT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAAATTTTCTTGAGGGGAAGTCTCGAGGGGAAATGGAAACCACTGCT  550

seq1  CTGGGAGATGTAAAGCCACTTTATGCAAAACGGTTTGCACATTTTTAAGT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGAGATGTAAAGCCACTTTATGCAAAACGGTTTGCACATTTTTAAGT  600

seq1  AGCTTCAAAAGTCAGCAATTGCGCAACCAACAGCAGTTGCCATGGTAGCA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTCAAAAGTCAGCAATTGCGCAACCAACAGCAGTTGCCATGGTAGCA  650

seq1  AAAGTTGGTGTTATTCTAATCCACTTGGCGATGATTTGGCTGGGACCGCA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTGGTGTTATTCTAATCCACTTGGCGATGATTTGGCTGGGACCGCA  700

seq1  ATTGGACGTGGGAAGCCATGTTCTTCATGTGGAGTGTGTGTGTGTGTGTG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGACGTGGGAAGCCATGTTCTTCATGTGGAGTGTGTGTGTGTGTGTG  750

seq1  TGTGTGTGTGTTTATGTGTTTATGTAGGGGGTGCACATGCACATGTGTAT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTTTATGTGTTTATGTAGGGGGTGCACATGCACATGTGTAT  800

seq1  ATATGAGTGTAGGCCACAATATAACTTTTATGTGTTCCTCAGGTGCCATC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGAGTGTAGGCCACAATATAACTTTTATGTGTTCCTCAGGTGCCATC  850

seq1  CCTGTTTTTGGTCTTGGTTTAATATAGGGTCTCTCAGTGACCTGGAATTC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTTTTTGGTCTTGGTTTAATATAGGGTCTCTCAGTGACCTGGAATTC  900