BAC Information

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BAC

Clone NameB6Ng01-021N18
Chromosome9 (Build37)4 (Build37)
Map Location 31,569,469 - 31,569,90413,108,425 - 13,108,808
singlet/doubletsingletsinglet
Overlap geneEG666576
Upstream geneAdamts15, Adamts8, Zbtb44, BC038156, St14, Aplp2, EG638580, EG666539, Prdm10, Nfrkb, Tmem45b, LOC666558
Downstream geneBarx2, LOC100042266, Tpi-rs4, LOC666619, LOC666622, Grit, Kcnj5, Kcnj1, Fli1, LOC669759, LOC100041398, Ets1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-021N18.bB6Ng01-021N18.g
ACCDH854250DH854251
length430374
definitionDH854250|Mus musculus domesticus DNA, BAC clone: B6Ng01-021N18, 5' end.DH854251|Mus musculus domesticus DNA, BAC clone: B6Ng01-021N18, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(31,569,469 - 31,569,904)(13,108,425 - 13,108,808)
sequence
acattcttacacaaagatcacaaagcatcacgaaaaaacagacacagtcc
acctaaaaaaatcagaacaacaacagaaatagaagagtaagaacaaatat
taaaacagtatatacattatatttagaacatacaaacataatacatacat
acacacacacacacacacacaagagtgtatgtgtgtgtgtgtgtgtgtgt
gtgtgtgtgtgtagtgtgtgtgtgtgtgctatatagagtgtgtagagtgt
gtgtgtgtgtgtgcgctctcatatctgtgtggggggggggggcgtgtggt
atgaactgcctggcctgaataatctatactgaaaaacctttattgaatat
agtatgactttttcatgattactattctaagtaggaaaatatatgaatag
ttttaataataaaaatatctgctataatat
tcctgctagtgagaactgaagagctacgttggggaattatgtctgtgttc
ctgaggccgatgccattgacgcattcaagtgtttcctcaattctatacat
ctaatgcttcactacaattgccttttatctatgctgcttcagctaaaggg
attgttgtgttttcagctgtttcaaattatcgtgttcagctgtatctact
gaggctattgctgccttgattcgaggggtgtggcctgccggtatatccta
gggcaatgacactataccctcccaacctagatgggcctccctcccttttt
gtacgagtgttcctgattcccttccaccgtgggcagtgccccttatatgt
atggttgttatgtggggtgaatgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_31569469_31569904
seq2: B6Ng01-021N18.b_47_482 (reverse)

seq1  ATATTATAGCAGATATTTTTATTAATAAAACTATTCATATATTTTCCTAC  50
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  ATATTATAGCAGATATTTTTATTATTAAAACTATTCATATATTTTCCTAC  50

seq1  TTAGAATAGTAATCATGAAAAAGTCATACTCTTTTCAATAAAGGTTTTTC  100
      |||||||||||||||||||||||||||||| | |||||||||||||||||
seq2  TTAGAATAGTAATCATGAAAAAGTCATACTATATTCAATAAAGGTTTTTC  100

seq1  AGTATAGATTATTCAGGCCAGGCAGTTCATACCAAAAGTCCAGTACAAGG  150
      |||||||||||||||||||||||||||||||||| | | ||    |    
seq2  AGTATAGATTATTCAGGCCAGGCAGTTCATACCACACGCCCCCCCC----  146

seq1  AACCTGACACCCTCTTCTG---GC---CTCTAATAGAAACTGTACA----  190
        ||  ||||     |  |   ||   | |  | | | ||| ||||    
seq2  --CCCCACACAGATATGAGAGCGCACACACACACACACACTCTACACACT  194

seq1  -TATATGGTACAGATAAACACATGCAGGTGCGCACACACACACACACACA  239
       ||||| | ||| | | |||||      | | ||||||||||||||||||
seq2  CTATATAGCACACACACACACA-----CTACACACACACACACACACACA  239

seq1  CACACACACACATACACTCTTGTGTGTGTGTGTGTGTGTGTATGTATGTA  289
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACATACACTCTTGTGTGTGTGTGTGTGTGTGTATGTATGTA  289

seq1  TTATGTTTGTATGTTCTAAATATAATGTATATACTGTTTTAATATTTGTT  339
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGTTTGTATGTTCTAAATATAATGTATATACTGTTTTAATATTTGTT  339

seq1  CTTACTCTTCTATTTCTGTTGTTGTTCTGATTTTTTTAGGTGGACTGTGT  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACTCTTCTATTTCTGTTGTTGTTCTGATTTTTTTAGGTGGACTGTGT  389

seq1  CTGTTTTTTCGTGATGCTTTGTGATCTTTGTGTAAGAATGTGAATTC  436
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTTTTCGTGATGCTTTGTGATCTTTGTGTAAGAATGTGAATTC  436

seq1: chr4_13108425_13108808
seq2: B6Ng01-021N18.g_75_444

seq1  GCTAGTGAGAACTGAAGAGCTACGTTGGGGAATTATGTCTGTGTTCCTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGTGAGAACTGAAGAGCTACGTTGGGGAATTATGTCTGTGTTCCTGA  50

seq1  GGCCCATGCCATTGGTGCATTCAAGTGTTTCCTCAATTCTTTACATCTAA  100
      |||| |||||||||  |||||||||||||||||||||||| |||||||||
seq2  GGCCGATGCCATTGACGCATTCAAGTGTTTCCTCAATTCTATACATCTAA  100

seq1  TGCTTCGCTACAATTGCCTTTTTTCTATGCTGCTTCAGCTAAAGGGATTG  150
      |||||| ||||||||||||||| |||||||||||||||||||||||||||
seq2  TGCTTCACTACAATTGCCTTTTATCTATGCTGCTTCAGCTAAAGGGATTG  150

seq1  TTGTGTTTTCAGATGATTCAAAATATTTCACAGATGAGTGATTGTGTTCA  200
      |||||||||||| || ||||||                | || |||||||
seq2  TTGTGTTTTCAGCTGTTTCAAA----------------TTATCGTGTTCA  184

seq1  GCTGTATCTACTAAAGCTAATGCTACCTGGATTCGAGGGGTGTGGCCTGC  250
      |||||||||||| | |||| |||| ||| |||||||||||||||||||||
seq2  GCTGTATCTACTGAGGCTATTGCTGCCTTGATTCGAGGGGTGTGGCCTGC  234

seq1  CAGGATATCCAAGGGCAATGGCACTGTACCCTCCTAACCTAGATGGGCCC  300
      | | |||||| ||||||||| |||| |||||||| |||||||||||| ||
seq2  CGGTATATCCTAGGGCAATGACACTATACCCTCCCAACCTAGATGGG-CC  283

seq1  CCCCTTCCTTTTTGTAAGAGTGTTTCTGATTCCCTTCCACCTTGGGCAGT  350
       |||| |||||||||| ||||||| |||||||||||||||| ||||||||
seq2  TCCCTCCCTTTTTGTACGAGTGTTCCTGATTCCCTTCCACCGTGGGCAGT  333

seq1  GCCCCTTATATGTATG---GTTATGTGGGGTGAATGG  384
      ||||||||||||||||   ||||||||||||||||||
seq2  GCCCCTTATATGTATGGTTGTTATGTGGGGTGAATGG  370