BAC Information

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BAC

Clone NameB6Ng01-022G17
Chromosome9 (Build37)
Map Location 28,141,541 - 28,327,431
singlet/doubletdoublet
Overlap geneOpcml
Upstream geneSpata19, LOC666440, LOC100041202
Downstream geneHnt, LOC625222
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-022G17.bB6Ng01-022G17.g
ACCDH854639DH854640
length810310
definitionDH854639|Mus musculus domesticus DNA, BAC clone: B6Ng01-022G17, 5' end.DH854640|Mus musculus domesticus DNA, BAC clone: B6Ng01-022G17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(28,141,541 - 28,142,328)(28,327,122 - 28,327,431)
sequence
gaattctcagctgaggaataccgaatggctgagaagcacctaaaaaaaaa
tgttcaacatccttagccatcagggaaatgcaaatcaaaacaactctgaa
attccacctcacaccagacagaatggctaagatcaaaaactcaggtgaca
gcagagtttcaagtgaccagcaagctggtgaggatatggaggaagaggaa
cactcctccattgctggtaggattgcaagctggtacaatcactctggaaa
tcagtttggtggttcctcagaaagttggacatagtactatcagaggatcc
agcaataccactcctaggcacatgcccagaagatgttccaccatgtaata
aaaacacatgctcccctatgttcataacagccttatttataatagccaga
agctggaaagaacctagatgtccctcaacagaggaatggatacagaaaat
ggggtacaattacacaatggatttctattgagtctttaaatgaccatggc
ttaactttggcaaagttctgtgggaccactgttttctccttggaaggaaa
tgctctctcctttttaacaacttggttgaaatttacacatttaattatgt
catgtttactatacacctctagtcgccaagagaaaaaagtggggggttag
aaaaacattttgggtttttatgcattattgtgcattcccttttttgtcaa
ctggaatctaaactagagtcaagtggaaaaaggataacttgactgagaaa
ctgcctccctcgattggcctatagtcaaggctgtgggttggtatgtgccc
tgcttgagga
ctatagagttcctatacactttgcaatgtcaatccttcctcctttcataa
gagtccccaaactccatccactgtttggttgtgggtgtctgcatctgtct
gagtcagctgctgggtagagcctctgtcccagacatttatgcataaaagg
aacagaaaaccttttaaggaaaatactatttgtaaacttatgattctttc
atatgtaacatgaggcatgtaccatactaggtaaaagaaaatataattag
ttgtgaatagaaatgtgcatttatgtgtgtgtgtgtgtgtgtgtgtgtgt
gtgtgtgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_28141541_28142328
seq2: B6Ng01-022G17.b_49_841

seq1  ATACCGAATGGCTGAGAAGCACCTAAAAAAAAATGTTCAACATCCTTAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCGAATGGCTGAGAAGCACCTAAAAAAAAATGTTCAACATCCTTAGC  50

seq1  CATCAGGGAAATGCAAATCAAAACAACTCTGAAATTCCACCTCACACCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAGGGAAATGCAAATCAAAACAACTCTGAAATTCCACCTCACACCAG  100

seq1  ACAGAATGGCTAAGATCAAAAACTCAGGTGACAGCAGAGTTTCAAGTGAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAATGGCTAAGATCAAAAACTCAGGTGACAGCAGAGTTTCAAGTGAC  150

seq1  CAGCAAGCTGGTGAGGATATGGAGGAAGAGGAACACTCCTCCATTGCTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAAGCTGGTGAGGATATGGAGGAAGAGGAACACTCCTCCATTGCTGG  200

seq1  TAGGATTGCAAGCTGGTACAATCACTCTGGAAATCAGTTTGGTGGTTCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGATTGCAAGCTGGTACAATCACTCTGGAAATCAGTTTGGTGGTTCCT  250

seq1  CAGAAAGTTGGACATAGTACTATCAGAGGATCCAGCAATACCACTCCTAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAGTTGGACATAGTACTATCAGAGGATCCAGCAATACCACTCCTAG  300

seq1  GCACATGCCCAGAAGATGTTCCACCATGTAATAAAAACACATGCTCCCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACATGCCCAGAAGATGTTCCACCATGTAATAAAAACACATGCTCCCCT  350

seq1  ATGTTCATAACAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTCATAACAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCTAG  400

seq1  ATGTCCCTCAACAGAGGAATGGATACAGAAAATGGGGTACAATTACACAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCCCTCAACAGAGGAATGGATACAGAAAATGGGGTACAATTACACAA  450

seq1  TGGATTTCTATTGAGTCTTTAAATGACCATGGCTTAACTTTGGCAAAGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATTTCTATTGAGTCTTTAAATGACCATGGCTTAACTTTGGCAAAGTT  500

seq1  CTGTGGGACCACTGTTTTCTCCTTGGAAGGAAATGCTCTCTCCTTTTTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGGACCACTGTTTTCTCCTTGGAAGGAAATGCTCTCTCCTTTTTAA  550

seq1  CAACTTGGTTGAAATTTACACATTTAATTATGTCATGTTTACTATACACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTTGGTTGAAATTTACACATTTAATTATGTCATGTTTACTATACACC  600

seq1  TCTAGTCGCCAAGAG-AAAAAGTGGGGGGTTAG-AAAACATTTTGGGTTT  648
      ||||||||||||||| ||||||||||||||||| ||||||||||||||||
seq2  TCTAGTCGCCAAGAGAAAAAAGTGGGGGGTTAGAAAAACATTTTGGGTTT  650

seq1  TTATGCATTA-TGTGCATTCCC-TTTTTGTCAACT-GAATCTAAACTAGA  695
      |||||||||| ||||||||||| |||||||||||| ||||||||||||||
seq2  TTATGCATTATTGTGCATTCCCTTTTTTGTCAACTGGAATCTAAACTAGA  700

seq1  GTCAAGTGGAAAAAGGAAAACTTGACTGAGAAACTGCCTCCCTCAGATTG  745
      ||||||||||||||||| |||||||||||||||||||||||||| |||||
seq2  GTCAAGTGGAAAAAGGATAACTTGACTGAGAAACTGCCTCCCTC-GATTG  749

seq1  GCCTATAGTCAAGGCTGT-GGATGGTATGTGCCCTGCATGAGGA  788
      |||||||||||||||||| || ||||||||||||||| ||||||
seq2  GCCTATAGTCAAGGCTGTGGGTTGGTATGTGCCCTGCTTGAGGA  793

seq1: chr9_28327122_28327431
seq2: B6Ng01-022G17.g_72_381 (reverse)

seq1  ACACACACACACACACACACACACACACACACACACATAAATGCACATTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACACACACACACACACATAAATGCACATTT  50

seq1  CTATTCACAACTAATTATATTTTCTTTTACCTAGTATGGTACATGCCTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTCACAACTAATTATATTTTCTTTTACCTAGTATGGTACATGCCTCA  100

seq1  TGTTACATATGAAAGAATCATAAGTTTACAAATAGTATTTTCCTTAAAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTACATATGAAAGAATCATAAGTTTACAAATAGTATTTTCCTTAAAAG  150

seq1  GTTTTCTGTTCCTTTTATGCATAAATGTCTGGGACAGAGGCTCTACCCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCTGTTCCTTTTATGCATAAATGTCTGGGACAGAGGCTCTACCCAG  200

seq1  CAGCTGACTCAGACAGATGCAGACACCCACAACCAAACAGTGGATGGAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGACTCAGACAGATGCAGACACCCACAACCAAACAGTGGATGGAGT  250

seq1  TTGGGGACTCTTATGAAAGGAGGAAGGATTGACATTGCAAAGTGTATAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGGACTCTTATGAAAGGAGGAAGGATTGACATTGCAAAGTGTATAGG  300

seq1  AACTCTATAG  310
      ||||||||||
seq2  AACTCTATAG  310