BAC Information

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BAC

Clone NameB6Ng01-022O13
Chromosome9 (Build37)5 (Build37)
Map Location 7,793,231 - 7,794,25921,300,697 - 21,301,212
singlet/doubletsingletsinglet
Overlap geneTmem123
Upstream geneEG547034, Dync2h1, LOC100039658, Dcun1d5, Mmp13, Mmp12, Mmp1b, Mmp3, Mmp1a, Mmp10, Mmp8, Mmp27, Mmp20, Mmp7, LOC665057, LOC100039782
Downstream geneBirc2, Birc3, Yap1, EG665090, 9230110C19Rik, AK129341, LOC100039855, 1700018P22Rik, LOC665108, 1700128F08Rik, Trpc6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-022O13.bB6Ng01-022O13.g
ACCDH854981DH854982
length1,029895
definitionDH854981|Mus musculus domesticus DNA, BAC clone: B6Ng01-022O13, 5' end.DH854982|Mus musculus domesticus DNA, BAC clone: B6Ng01-022O13, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(7,793,231 - 7,794,259)(21,300,697 - 21,301,212)
sequence
gaattctggtttccttatccccaagcctactccttacccttggaaagaga
gctgcatcctgatatttccagggaagcagccacgctgtctgtggcactgt
aagttctaaagtttatactcaggtcaaactcagggccaggtttaacaaag
aaagtgtttagttacaaaatactaatatagtatgctattgtaaaaggaca
aagtgaattatagcaatttcaaaaagtatagaaataagccaaaaatatct
gaatgagcacacatctatgttagaattaaaaatgtaagtataacttttgt
aatctgcttctggttttcaaaacaacaaactaccaagaatttttttatat
ataagaatcatttctacttgctttacatcgggtccaactgacatggtgag
gcatggactgctcaggttatgttaacacggagagagatgctaggaaatgg
accatggaattagactagtttcaaatgagggctgctgagaaagccacact
tctcattggctttcagccactgctctgctttctatgtgaaatacagttca
gggcctgggggcaacagggtggtgaaagtttaactttgtttgtctgttac
attcttggtacttcagtacctgccagagatcctcttgaacacttgtttct
ttagcactttggagatataaaccactttataaaggcactgttattatttg
cctcttacatttccactgagttgggggttaaaagtaatttacttattatc
ttttctaatttgttactttcaaataccaggactttgttgaagagacttct
ttttaatgtataaaaattgaatgtttcctaagcataagttgtcttccaag
tctcacttaagcaaatgcttacctttcctagctttcctagagattgtgtt
tattaagataaaacattgaataaatccttaggaggactaattcaaatatg
acaggtggcaccatttttattggtgtggggaatttggatcttgagaaaga
ctaaaagcaaaccctattgcgctttttct
gaattctttgtttagctctgtactccattttttaataggtaatttgtttc
tcaggagtctaacttcttgagttctttgtatatattagatattatccctc
tatcagatataggattggtaaagatcctttcccaatctgttggtgacctt
tttgtcttcttaacagtgtcctttgccttacagaagctttgcaattttat
gaggtcccatttgtcgattcttgatcttacagcaccagacattgctgttc
tgttcaggaattttctccctgtgcccgtatgttcgaggctcttccccact
ttctcttctataagttccagtgtctctggttttatgtgaaggtccttgat
ctacttggacttgacctttctacaaggagataagaatgggtcaatttgcc
ttcttctacatgctaaccaccagttgaaccagcaccatttgttgaaaatg
ctgtcctttttccactggatggttttagctcctttgtcaaagatcaagtg
accataggtgcgtgtattcatttctggttcttcaattctactccattgat
ctacctgcctgtcattgtaccaataccatgcagtttttgtcccaagtgct
tggtagtacagcttgaggtcaaggatggtgattctgccagaggttttttt
attgttgagaatagtttttgctatcctgggttttttgttattacagatga
atttggaaattgctctttttaaatctatgaagacttgagttgaaattttg
atggggattgcactgagtagattttggcaagatggccatctttactatat
taatcctgccaatccataagcatgggagaagtcatacacatttctaactc
cacagtctggagatggtagccagtgatcagatatttaaatgactt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_7793231_7794259
seq2: B6Ng01-022O13.b_44_1072

seq1  GAATTCTGGTTTCCTTATCCCCAAGCCTACTCCTTACCCTTGGAAAGAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGTTTCCTTATCCCCAAGCCTACTCCTTACCCTTGGAAAGAGA  50

seq1  GCTGCATCCTGATATTTCCAGGGAAGCAGCCACGCTGTCTGTGGCACTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCATCCTGATATTTCCAGGGAAGCAGCCACGCTGTCTGTGGCACTGT  100

seq1  AAGTTCTAAAGTTTATACTCAGGTCAAACTCAGGGCCAGGTTTAACAAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTCTAAAGTTTATACTCAGGTCAAACTCAGGGCCAGGTTTAACAAAG  150

seq1  AAAGTGTTTAGTTACAAAATACTAATATAGTATGCTATTGTAAAAGGACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTGTTTAGTTACAAAATACTAATATAGTATGCTATTGTAAAAGGACA  200

seq1  AAGTGAATTATAGCAATTTCAAAAAGTATAGAAATAAGCCAAAAATATCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGAATTATAGCAATTTCAAAAAGTATAGAAATAAGCCAAAAATATCT  250

seq1  GAATGAGCACACATCTATGTTAGAATTAAAAATGTAAGTATAACTTTTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGAGCACACATCTATGTTAGAATTAAAAATGTAAGTATAACTTTTGT  300

seq1  AATCTGCTTCTGGTTTTCAAAACAACAAACTACCAAGAATTTTTTTATAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTGCTTCTGGTTTTCAAAACAACAAACTACCAAGAATTTTTTTATAT  350

seq1  ATAAGAATCATTTCTACTTGCTTTACATCGGGTCCAACTGACATGGTGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGAATCATTTCTACTTGCTTTACATCGGGTCCAACTGACATGGTGAG  400

seq1  GCATGGACTGCTCAGGTTATGTTAACACGGAGAGAGATGCTAGGAAATGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGGACTGCTCAGGTTATGTTAACACGGAGAGAGATGCTAGGAAATGG  450

seq1  ACCATGGAATTAGACTAGTTTCAAATGAGGGCTGCTGAGAAAGCCACACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATGGAATTAGACTAGTTTCAAATGAGGGCTGCTGAGAAAGCCACACT  500

seq1  TCTCATTGGCTTTCAGCCACTGCTCTGCTTTCTATGTGAAATACAGTTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATTGGCTTTCAGCCACTGCTCTGCTTTCTATGTGAAATACAGTTCA  550

seq1  GGGCCTGGGGGCAACAGGGTGGTGAAAGTTTAACTTTGTTTGTCTGTTAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCTGGGGGCAACAGGGTGGTGAAAGTTTAACTTTGTTTGTCTGTTAC  600

seq1  ATTCTTGGTACTTCAGTACCTGCCAGAGATCCTCTTGAACACTTGTTTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTGGTACTTCAGTACCTGCCAGAGATCCTCTTGAACACTTGTTTCT  650

seq1  TTAGCACTTTGGAGATATAAACCACTTTATAAAGGCACTGTTATTATTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCACTTTGGAGATATAAACCACTTTATAAAGGCACTGTTATTATTTG  700

seq1  CCTCTTACATTTCCACTGAGTTGGGGGTTAAAAGTAATTTACTTATTATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTACATTTCCACTGAGTTGGGGGTTAAAAGTAATTTACTTATTATC  750

seq1  TTTTCTAATTTGTTACTTTCAAATACCAGGACTTTGTTGAAGAGACTTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTAATTTGTTACTTTCAAATACCAGGACTTTGTTGAAGAGACTTCT  800

seq1  TTTTAATGTATAAAAATTGAATGTTTCCTAAGCATAAGTTGTCTTCCAAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAATGTATAAAAATTGAATGTTTCCTAAGCATAAGTTGTCTTCCAAG  850

seq1  TCTCACTTAAGCAAATGCTTACCTTTCCTAGCTTTCCTAGAGAATGTGTT  900
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TCTCACTTAAGCAAATGCTTACCTTTCCTAGCTTTCCTAGAGATTGTGTT  900

seq1  TATTAAGATAAAACAATGAATAAATCCATAGGAGGACTAATTCAAATATG  950
      ||||||||||||||| ||||||||||| ||||||||||||||||||||||
seq2  TATTAAGATAAAACATTGAATAAATCCTTAGGAGGACTAATTCAAATATG  950

seq1  ACAGTTGGCAACATATTTTATGGTGTGGTAATTTTGTATCTTGAGAAAGA  1000
      |||| ||||| ||| |||  ||||||||  | |||| |||||||||||||
seq2  ACAGGTGGCACCATTTTTATTGGTGTGGGGAATTTGGATCTTGAGAAAGA  1000

seq1  CT-AAAGCAAACCCTTATTGCCCTTTTTCT  1029
      || ||||||||||| |||||| ||||||||
seq2  CTAAAAGCAAACCC-TATTGCGCTTTTTCT  1029

seq1: chr5_21300697_21301212
seq2: B6Ng01-022O13.g_811_962

seq1  AATTTTGATGGGGATTGCATTGAATCTGTAGATTGCTTTCAGCAAGATAG  50
      ||||||||||||||||||| |||    |||||    |||  ||||||| |
seq2  AATTTTGATGGGGATTGCACTGA----GTAGA----TTTTGGCAAGATGG  42

seq1  CCATTTTTACTATATTAATCCTGTCAATATAAAATGGTAATCTTGTGTGT  100
      |||| |||||||||||||||||| ||||  |      ||| | || | | 
seq2  CCATCTTTACTATATTAATCCTGCCAATCCA------TAAGCATGGGAGA  86

seq1  AATTCATTCTTCCCTCGTCTTTCTCAGGTTTTGGAACTCCGTTACAATAT  150
      |               ||| | | ||   |||  ||||||   ||| | |
seq2  A---------------GTCATACACA---TTTCTAACTCC---ACAGTCT  115

seq1  TTTGATTTGAACAGAAACGGTGACCAGCTTCCCTCTCTTGTTGAACTTCA  200
         |||   | |     | |||| |||      | | |   || ||||  
seq2  GGAGATGGTAGC-----CAGTGATCAG-----ATATTTAAATG-ACTT--  152

seq1  TGTTAATTTTTGTTTCTGTTTTGTTTTAGCTCTGGATGAAGGGGATATTG  250
                                                        
seq2  --------------------------------------------------  152

seq1  CCTTGCTGAAAACTTACGTAAGTCTTTCAAATGGCTACAACGTGAAGATG  300
                                                        
seq2  --------------------------------------------------  152

seq1  TTTTGTGTTTAAAAAAAAATCTTGTTTTTATTTTGTCTTTCTAAACTGAT  350
                                                        
seq2  --------------------------------------------------  152

seq1  TAGAAAGGACTGTCAAAGAGCTCACACTAATTAAGAGGAGTTCTCTGCCC  400
                                                        
seq2  --------------------------------------------------  152

seq1  AAAGTTTCCATCTAGATGACAACAGAGTGGGTATGCAGCATGCCTGACCC  450
                                                        
seq2  --------------------------------------------------  152

seq1  TACTCCCGGTCTTTATACAACCTCTAATAATGAGGGCTAAAATATCGAAA  500
                                                        
seq2  --------------------------------------------------  152

seq1  GATATTTAAATGACTT  516
                      
seq2  ----------------  152