BAC Information

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BAC

Clone NameB6Ng01-024A20
Chromosome9 (Build37)
Map Location 90,663,307 - 90,664,451
singlet/doubletsinglet
Overlap genenone
Upstream geneRasgrf1, Ctsh, Morf4l1, LOC621414, Adamts7, Tbc1d2b, LOC100039777, LOC100039925
Downstream geneEG434428, LOC621576, Zic1, Zic4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-024A20.bB6Ng01-024A20.g
ACCDH855799DH855800
length7631,130
definitionDH855799|Mus musculus domesticus DNA, BAC clone: B6Ng01-024A20, 5' end.DH855800|Mus musculus domesticus DNA, BAC clone: B6Ng01-024A20, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctgcactaaactcatctggaccggttttgtttttttttgtttttg
ttttttttttttttgatgggggggagtggagacttttaatgactgcttct
atttctttagggattataggactgtttagacggtttatctgagtttgatt
tgactctggtatttggtatctgtctacaaaattgtccatttcatccagat
tttccagttttgttcaacataggattttgtagtagggtctgatgattttt
tttttcatttcctcagtttctgatgttatatctcccctttcatgtttgat
tttgttaattttgatactgtctctgccctctggttagtctgcctaacggt
tttatatcttcttaattttctcaaagaatcaactcctgattttcttgatt
ctttgtatagttctctttatttctacttggttgatttcagccctgagtgt
gattatttccttatgtctacaactcttggttgtatttgcttctttttgtt
ccagatctttcaggtttcctatcaagctgctagcatatgctctctccggg
ttctttttggaggcactcagagctatgccttttcctcttagcactgcttt
cattgtgtcccataagtttgggcatgttgtatcttcattttcattaaatt
gtaaagtctttaatttctttctgtatttcttccttgatcaagttattatt
gagtcaggcattgtttcagcttccatgtttatgtgggctttcttggggtt
tttttgttgctat
gaattcatcttccttttaggagcaggaattattagacccagacggatacg
caatggagcctggggccctagtgttattagaaatcttggaggccagctga
cctttcaactggcaaagctggctctttcttttgggagttggtatctgctg
cctctggctccttggaatgagggaccacgtcagtgaaagtccttggactt
ttgaacctatgcacaattgttagttcattcccatgttctgtgctgaactt
cttcattatgaccagacctctaagttgatcttaatgaaaagttttctttt
gatctttgtccttctgagactttgtgaacgtaaggaaaaatacaagttct
gggctgaagagaaatagataagaggtaacaatttcaagcctaaggtgaga
tgacaattatctgcagtgacaagtagtatctagtgaagcagctaactgtc
tcagaaggttcattagagacaaaagaccttaaggtaataatttaatttaa
aatgtatggggaaatttatacagcatatgcataactatattggacacttt
aaaattatattatataattcagtaattcttattaatattaggctgttatc
agatggaaatattctgcaagattataatttgctagattacagttaaatac
acacaggactaatcagtattttagttttcctctgtcttcttctctgacca
caggagtctggaggtggatgaaggtaaaaagagagtccagataaccaaag
aacagtttcacctttaaccactgtctgggcctatcacaaaaagaaatggt
tgccctggcaacaagaacaaaattaatgctttcaaatcctagcttctact
caggtaaccttttagttccatagttttcagatatattttgatactaaagt
cagtttcttattaccagtggatatcatcactaaatgcccttttatcttat
ttaaagtggagtcctcagactgtaatttactgaggcttggggccctaatg
gcaggactcattatcacagctggagtaactttcactgcactttaataaca
ttaccttggtatcacgtattcaataggaaatgtgtaaaattatcttcggg
ttttacccactaatatttttccatttataa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_90663307_90664451
seq2: B6Ng01-024A20.g_65_1194 (reverse)

seq1  TTATAAATTAGAAAAAATGTAGTGGGATAAAACACCGAAGATAATTTTTT  50
      ||||||| | ||||||   ||||||| |||||| ||||||||||||||  
seq2  TTATAAA-TGGAAAAATATTAGTGGG-TAAAAC-CCGAAGATAATTTTAC  47

seq1  ACATTT-CTATTGAATACGTTGATTTACAGAGTAATTTGTTATTTAAGTG  99
      |||||| |||||||||||| ||| |  ||  ||||  ||||||| |||||
seq2  ACATTTCCTATTGAATACG-TGA-TACCAAGGTAA--TGTTATTAAAGTG  93

seq1  CAGTGAAAGTTACT-CAGCTGTGATAATTGAGTCTTGCCA-TAGGGCCCC  147
      |||||||||||||| |||||||||||| |||||| ||||| |||||||||
seq2  CAGTGAAAGTTACTCCAGCTGTGATAA-TGAGTCCTGCCATTAGGGCCCC  142

seq1  AAAGCCTCAGTAAAATTACAGTCTGAGGGACTCAACTTTTAAATAAGAAT  197
       |||||||||| |||||||||||||| |||||| || |||||||||| ||
seq2  -AAGCCTCAGT-AAATTACAGTCTGA-GGACTCCAC-TTTAAATAAG-AT  187

seq1  AAAAGGGGCATTTAGTTGATGAATATCCACTGGTAATAAGAAACCTGACT  247
      |||| |||||||||| ||||| ||||||||||||||||||||| ||||| 
seq2  AAAA-GGGCATTTAG-TGATG-ATATCCACTGGTAATAAGAAA-CTGAC-  232

seq1  TTTAGTATCAAAATATATCTGAAAACTATGGAACTAAAAGGTTACCTGAG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGTATCAAAATATATCTGAAAACTATGGAACTAAAAGGTTACCTGAG  282

seq1  TAGAAGCTAGGATTTGAAAGCATTAATTTTGTTCTTGTTGCCAGGGCAAC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAGCTAGGATTTGAAAGCATTAATTTTGTTCTTGTTGCCAGGGCAAC  332

seq1  CATTTCTTTTTGTGATAGGCCCAGACAGTGGTTAAAGGTGAAACTGTTCT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCTTTTTGTGATAGGCCCAGACAGTGGTTAAAGGTGAAACTGTTCT  382

seq1  TTGGTTATCTGGACTCTCTTTTTACCTTCATCCACCTCCAGACTCCTGTG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTATCTGGACTCTCTTTTTACCTTCATCCACCTCCAGACTCCTGTG  432

seq1  GTCAGAGAAGAAGACAGAGGAAAACTAAAATACTGATTAGTCCTGTGTGT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGAGAAGAAGACAGAGGAAAACTAAAATACTGATTAGTCCTGTGTGT  482

seq1  ATTTAACTGTAATCTAGCAAATTATAATCTTGCAGAATATTTCCATCTGA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAACTGTAATCTAGCAAATTATAATCTTGCAGAATATTTCCATCTGA  532

seq1  TAACAGCCTAATATTAATAAGAATTACTGAATTATATAATATAATTTTAA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAGCCTAATATTAATAAGAATTACTGAATTATATAATATAATTTTAA  582

seq1  AGTGTCCAATATAGTTATGCATATGCTGTATAAATTTCCCCATACATTTT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTCCAATATAGTTATGCATATGCTGTATAAATTTCCCCATACATTTT  632

seq1  AAATTAAATTATTACCTTAAGGTCTTTTGTCTCTAATGAACCTTCTGAGA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAAATTATTACCTTAAGGTCTTTTGTCTCTAATGAACCTTCTGAGA  682

seq1  CAGTTAGCTGCTTCACTAGATACTACTTGTCACTGCAGATAATTGTCATC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTAGCTGCTTCACTAGATACTACTTGTCACTGCAGATAATTGTCATC  732

seq1  TCACCTTAGGCTTGAAATTGTTACCTCTTATCTATTTCTCTTCAGCCCAG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCTTAGGCTTGAAATTGTTACCTCTTATCTATTTCTCTTCAGCCCAG  782

seq1  AACTTGTATTTTTCCTTACGTTCACAAAGTCTCAGAAGGACAAAGATCAA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTGTATTTTTCCTTACGTTCACAAAGTCTCAGAAGGACAAAGATCAA  832

seq1  AAGAAAACTTTTCATTAAGATCAACTTAGAGGTCTGGTCATAATGAAGAA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAACTTTTCATTAAGATCAACTTAGAGGTCTGGTCATAATGAAGAA  882

seq1  GTTCAGCACAGAACATGGGAATGAACTAACAATTGTGCATAGGTTCAAAA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAGCACAGAACATGGGAATGAACTAACAATTGTGCATAGGTTCAAAA  932

seq1  GTCCAAGGACTTTCACTGACGTGGTCCCTCATTCCAAGGAGCCAGAGGCA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCAAGGACTTTCACTGACGTGGTCCCTCATTCCAAGGAGCCAGAGGCA  982

seq1  GCAGATACCAACTCCCAAAAGAAAGAGCCAGCTTTGCCAGTTGAAAGGTC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGATACCAACTCCCAAAAGAAAGAGCCAGCTTTGCCAGTTGAAAGGTC  1032

seq1  AGCTGGCCTCCAAGATTTCTAATAACACTAGGGCCCCAGGCTCCATTGCG  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGGCCTCCAAGATTTCTAATAACACTAGGGCCCCAGGCTCCATTGCG  1082

seq1  TATCCGTCTGGGTCTAATAATTCCTGCTCCTAAAAGGAAGATGAATTC  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCGTCTGGGTCTAATAATTCCTGCTCCTAAAAGGAAGATGAATTC  1130