BAC Information

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BAC

Clone NameB6Ng01-024C22
Chromosome9 (Build37)
Map Location 106,981,986 - 106,983,167
singlet/doubletsinglet
Overlap geneDock3
Upstream geneLOC669311, 6230410P16Rik, Wdr82, Ppm1m, Twf2, Tlr9, Alas1, Wdr51a, Dusp7, Rpl29, Acy1, Abhd14a, Abhd14b, Pcbp4, Parp3, Rrp9, Iqcf1, Iqcf5, Iqcf3, Iqcf4, LOC100041096, Grm2, Tex264, Rad54l2, LOC100041128, Vprbp, Armet
Downstream geneMapkapk3, Cish, Hemk1, 6430571L13Rik, Cacna2d2, Tmem115, Cyb561d2, Tusc4, Zmynd10, Rassf1, Tusc2, Hyal2, Hyal1, Nat6, Hyal3, Ifrd2, BY080835, Sema3b, Gnai2, Slc38a3, Gnat1, Sema3f, Rbm5, Rbm6, Mon1a, Mst1r, 4921517D21Rik, Camkv, Traip, Ube1l, D330022A01Rik, 6230427J02Rik, 1700021K14Rik, Ihpk1, Gmppb, Rnf123, Amigo3, Mst1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-024C22.b
ACCDH855897
length1,171
definitionDH855897|Mus musculus domesticus DNA, BAC clone: B6Ng01-024C22, 5' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctgtacactatagtatataagtaggttagtatgcaacaacaatta
cattgtatagccacgaagaactttaattcatgtatattatagcatatgag
tagtttagtatataacaaggattacaatgtacagtcaggagttaataagc
aaaacaaaccaggatagaatcttgtcccttcaaaaaaattaaatcaattt
caattgtatttctcttatttctagtaataacaactatcactctcagttgg
attcactcagatatattgggtttttttcccgatttattattagacttagc
agtttctttcttcaagtgtcacctacaaaaaggaaatgagagagagctac
tatgtacccttgaatacataaaaattgttttatttgcactatcagttaat
gtgactacttacaaaactctggctagtatagcatttcccttatggaattc
taaagcaaccactggattatcttccagtatctggttctaatgataaaact
tttgagtccagtatgactactttcttttgtaagaaaagctgtttttctat
ttaaagacctttaagaatttctattcattcccggaatttttaaaaagtct
taatgtgcgttaatctggagtttgtttttaactccattcattactttaac
tgaatagtgatccttttctatctggaagctgtgtattttggctctgggac
ttctgcttccttataaacactacctcattgtctttgctctttttctggga
attagatttgatcttgaacctactcagtaatgattctctaccagtgaata
tgttcagtgaattattttccatcttttttgttttattttcaagaaaatta
cataaaatttatctgagttttttagtttagaaatcacatttttccttctt
tctttattgactctaattctaaataatgaggcttctttattctctttgta
gatactggaggagtttgatttgttcttaagttttagtgactttccatttc
tctaaaggagaagtcatttccctttgggccagaatttttttatcctggct
ccctcttccataagagacaattatttaatattcatggatctgatttgcgc
tatttatatttaaaggctcgtgaaaagtggaaacttggtataaaagatgg
atcgggcaagctttccttttc
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_106981986_106983167
seq2: B6Ng01-024C22.b_36_1206

seq1  GAATTCATGTACACTATAGTATATAAGTAGGTTAGTATGCAACAACAATT  50
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTC-TGTACACTATAGTATATAAGTAGGTTAGTATGCAACAACAATT  49

seq1  ACATTGTATAGCCACGAAGAACTTTAATTCATGTATATTATAGCATATGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTGTATAGCCACGAAGAACTTTAATTCATGTATATTATAGCATATGA  99

seq1  GTAGTTTAGTATATAACAAGGATTACAATGTACAGTCAGGAGTTAATAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTTTAGTATATAACAAGGATTACAATGTACAGTCAGGAGTTAATAAG  149

seq1  CAAAACAAACCAGGATAGAATCTTGTCCCTTCAAAAAAATTAAATCAATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACAAACCAGGATAGAATCTTGTCCCTTCAAAAAAATTAAATCAATT  199

seq1  TCAATTGTATTTCTCTTATTTCTAGTAATAACAACTATCACTCTCAGTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATTGTATTTCTCTTATTTCTAGTAATAACAACTATCACTCTCAGTTG  249

seq1  GATTCACTCAGATATATTGGGTTTTTTTCCCGATTTATTATTATACTTAG  300
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  GATTCACTCAGATATATTGGGTTTTTTTCCCGATTTATTATTAGACTTAG  299

seq1  CAGTTTCTTTCTTCAAGTGTCACCTACAAAAAGGAAATGAGAGAGAGCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTCTTTCTTCAAGTGTCACCTACAAAAAGGAAATGAGAGAGAGCTA  349

seq1  CTATGTACCCTTGAATACATAAAAATTGTTTTATTTGCACTATCAGTTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGTACCCTTGAATACATAAAAATTGTTTTATTTGCACTATCAGTTAA  399

seq1  TGTGACTACTTACAAAACTCTGGCTAGTATAGCATTTCCCTTATGGAATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGACTACTTACAAAACTCTGGCTAGTATAGCATTTCCCTTATGGAATT  449

seq1  CTAAAGCAACCACTGGATTATCTTCCAGTATCTGGTTCTAATGATAAAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAGCAACCACTGGATTATCTTCCAGTATCTGGTTCTAATGATAAAAC  499

seq1  TTTTGAGTCCAGTATGACTACTTTCTTTTGTAAGAAAAGCTGTTTTTCTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGAGTCCAGTATGACTACTTTCTTTTGTAAGAAAAGCTGTTTTTCTA  549

seq1  TTTAAAGACCTTTAAGAATTTCTATTCATTCCCGGAATTTTTAAAAAGTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAGACCTTTAAGAATTTCTATTCATTCCCGGAATTTTTAAAAAGTC  599

seq1  TTAATGTGCGTTAATCTGGAGTTTGTTTTTAACTCCATTCATTACTTTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATGTGCGTTAATCTGGAGTTTGTTTTTAACTCCATTCATTACTTTAA  649

seq1  CTGAATAGTGATCCTTTTCTATCTGGAAGCTGTGTATTTTGGCTCTGGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAATAGTGATCCTTTTCTATCTGGAAGCTGTGTATTTTGGCTCTGGGA  699

seq1  CTTCTGCTTCCTTATAAACACTACCTCATTGTCTTTGCTCTTTTTCTGGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGCTTCCTTATAAACACTACCTCATTGTCTTTGCTCTTTTTCTGGG  749

seq1  AATTAGATTTGATCTTGAACCTACTCAGTAATGATTCTCTACCAGTGAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAGATTTGATCTTGAACCTACTCAGTAATGATTCTCTACCAGTGAAT  799

seq1  ATGTTCAGTGAATTATTTTCCATCTTTTTTGTTTTATTTTCAAGAAAATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTCAGTGAATTATTTTCCATCTTTTTTGTTTTATTTTCAAGAAAATT  849

seq1  ACATAAAATTTATCTGAGTTTTTTAGTTTAGAAATCACATTTTTCCTTCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAAAATTTATCTGAGTTTTTTAGTTTAGAAATCACATTTTTCCTTCT  899

seq1  TTCTTTATTGACTCTAATTCTAAATAATGAGCCTTCTTTATTCTCTTTGT  950
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TTCTTTATTGACTCTAATTCTAAATAATGAGGCTTCTTTATTCTCTTTGT  949

seq1  AGATACTGGAGGAGTTTGATTTGTTCTTAAAGTTTTTAGTGAACTTCCAT  1000
      ||||||||||||||||||||||||||||||   |||||||||  ||||||
seq2  AGATACTGGAGGAGTTTGATTTGTTCTTAA--GTTTTAGTGACTTTCCAT  997

seq1  TTCTCTTAAAGGAGAAGTCATTTCCCTTGGGCCCAGATATTTTTAATCCT  1050
      ||||| |||||||||||||||||||||| || |||||  ||||| |||||
seq2  TTCTC-TAAAGGAGAAGTCATTTCCCTTTGGGCCAGAATTTTTTTATCCT  1046

seq1  GGTCTCCCTCTTCCATAAGAGACAATTTATTTAAATATCAGTGAAATCTG  1100
      || |||||||||||||||||||||| ||||||||   |||  |  |||||
seq2  GG-CTCCCTCTTCCATAAGAGACAA-TTATTTAATATTCATGG--ATCTG  1092

seq1  A-TTGCTC-ATTTATATATAAAATGCACTGGAAAAAATGTAGAAAGTTTT  1148
      | |||| | |||||||| | ||| || |  |||||   || |||| ||  
seq2  ATTTGCGCTATTTATAT-TTAAAGGCTCGTGAAAA---GTGGAAACTT--  1136

seq1  GTGAATAAATAGATG--ACTGGCAAGCTTT-CTTTTC  1182
        | ||||| |||||   | |||||||||| ||||||
seq2  -GGTATAAA-AGATGGATCGGGCAAGCTTTCCTTTTC  1171