BAC Information

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BAC

Clone NameB6Ng01-024K10
Chromosome9 (Build37)
Map Location 109,828,429 - 109,940,015
singlet/doubletdoublet
Overlap geneMtap4, LOC100049540
Upstream geneUqcrc1, Col7a1, Pfkfb4, Scotin, Trex1, 6620401K05Rik, Ccdc72, Ccdc51, EG665413, Plxnb1, E330009P21Rik, Fbxw13, Fbxw12, Fbxw14, LOC668758, EG382156, Fbxw16, Fbxw19, LOC635668, Fbxw15, EG382106, E330001B16Rik, C85627, EG382109, 1700124P09Rik, Spink8, 3000002C10Rik, Nme6, Camp, Cdc25a, LOC100043782
Downstream geneDhx30, Smarcc1, Rn4.5s-ps2, Cspg5, Tmem103, Scap, Ptpn23, Ngp, Klhl18, Kif9, Setd2, Nradd, Nbeal2, Ccdc12, Pthr1, Myl3, 9430025E04Rik, LOC665549, Tessp2, 1700036D21Rik, Tessp3, BC107230, 1700112C13Rik, Tsp50, Tmie, Als2cl, Gm590, Tdgf1, Lrrc2, Rtp3, ENSMUSG00000057802, Ltf
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-024K10.bB6Ng01-024K10.g
ACCDH856222DH856223
length1,002272
definitionDH856222|Mus musculus domesticus DNA, BAC clone: B6Ng01-024K10, 5' end.DH856223|Mus musculus domesticus DNA, BAC clone: B6Ng01-024K10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(109,938,996 - 109,940,015)(109,828,429 - 109,828,700)
sequence
gaattcatcatcaataacttttctttggttcccatgctcaccaccggaag
atgaaccagagacccaacccaattcagaaaatgggcaggggcccagcttg
ggatcaataatcttccatggaggagaaccttccagtagctcaggagggac
cctggcaggtttagaccgtgctgacctgcggtcattgggtctgcaaacgt
gtttaccttgtgaggaagggaaacctgcaatacatgaacttggctaaaaa
ttctaaacagcactttcactcttatcgttataaagaaagtttagtgatgc
atttaagtgactcacaccattcatttatataaaccttttcctaaacacct
cttatccttaactgggtttatcaacaattatcatcacagatcaaattttt
gtccagatatatttataaaaagttaagacatttaaaatcttcactttaaa
taattcattttaacagagcagtaaacatgtaagaaacccactttctgcct
aaagaaatggaatatactgaaaaaaattaaaacaaacaaacaaacaaact
gaactttataaactatactgttaataatgaccaccacagaagcagcaact
aaaaaatgctcccactatcatcccatcactcctgatggtcacattccagg
actcacctgagcaaggctcagaaggctggctgccaggcgtttccttctgc
tctaagttctctaatggagaaggtgcatctattggttaggtagacatttg
ttctgcagctttgactggttctaaagataagggtaaaattcatgtaagtt
cagagagataatatttgagctaatttttatctatcataaattagaatgag
aatacatttttgaagaattcttctgaattctagagaaatcagaatggtca
ttggaaagtagataggttccctgttggtttttcctcctttttaaaaaagt
attatttattattttaacattattattatgtagttagtaccctatgctgt
ct
acggttggctggacttggcagtttattcctttaatcccaatacttgggag
gcagaggcaggtagatctctgagtttgaagctggacaggtttacttggtg
agttccaagtcatccaggactacatagtgagagtgtgtctctaaataaat
aaataaataagtaaataatcaaggtcattcttagctcagaggagatctga
aagctagcctcggctagaagactagtcattcatatatatatatatatata
tgtatatatatatgtatgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_109938996_109940015
seq2: B6Ng01-024K10.b_40_1041 (reverse)

seq1  AGACAGCTATAGGGTACTTA-TACATACAATAATAAATAAATGTTTAAAA  49
      ||||||| |||||||||| | |||||  ||||||     ||||||  |||
seq2  AGACAGC-ATAGGGTACTAACTACAT--AATAAT-----AATGTT--AAA  40

seq1  ATAAATAAATAAATACTTTTTTTAAAAAAGGAAGGAAAAAACAAACAGGG  99
      || ||||||| |||||||||||  ||||||||  | |||||| |||||||
seq2  AT-AATAAAT-AATACTTTTTT--AAAAAGGA--GGAAAAACCAACAGGG  84

seq1  AACCCTATCTACCTTCCAATTGCCATTCCTGATTTCTCTAGAATTCAGAA  149
      || ||||||||| |||||||  ||||| ||||||||||||||||||||||
seq2  AA-CCTATCTACTTTCCAATGACCATT-CTGATTTCTCTAGAATTCAGAA  132

seq1  GAATTCTTC-AAAATGTATTCTCATTTCTAATTTATGATAGATAAAAATT  198
      ||||||||| |||||||||||||| |||||||||||||||||||||||||
seq2  GAATTCTTCAAAAATGTATTCTCA-TTCTAATTTATGATAGATAAAAATT  181

seq1  AGCTCAAATATTATCTCTCTGAAACTTACATGAATTTTACCCTTATCTTT  248
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  AGCTCAAATATTATCTCTCTG-AACTTACATGAATTTTACCCTTATCTTT  230

seq1  AGAACCAGTCAAAGCTGCAGAACAAATGTCTACCTTACCAATAGATGCAC  298
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  AGAACCAGTCAAAGCTGCAGAACAAATGTCTACCTAACCAATAGATGCAC  280

seq1  CTTCTCCATTAGAGAACTTAGAGCAGAAGGAAACGCCTGGCAGCCAGCCT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCCATTAGAGAACTTAGAGCAGAAGGAAACGCCTGGCAGCCAGCCT  330

seq1  TCTGAGCCTTGCTCAGGTGAGTCCTGGAATGTGACCATCAGGAGTGATGG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGCCTTGCTCAGGTGAGTCCTGGAATGTGACCATCAGGAGTGATGG  380

seq1  GATGATAGTGGGAGCATTTTTTAGTTGCTGCTTCTGTGGTGGTCATTATT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGATAGTGGGAGCATTTTTTAGTTGCTGCTTCTGTGGTGGTCATTATT  430

seq1  AACAGTATAGTTTATAAAGTTCAGTTTGTTTGTTTGTTTGTTTTAATTTT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGTATAGTTTATAAAGTTCAGTTTGTTTGTTTGTTTGTTTTAATTTT  480

seq1  TTTCAGTATATTCCATTTCTTTAGGCAGAAAGTGGGTTTCTTACATGTTT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGTATATTCCATTTCTTTAGGCAGAAAGTGGGTTTCTTACATGTTT  530

seq1  ACTGCTCTGTTAAAATGAATTATTTAAAGTGAAGATTTTAAATGTCTTAA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCTCTGTTAAAATGAATTATTTAAAGTGAAGATTTTAAATGTCTTAA  580

seq1  CTTTTTATAAATATATCTGGACAAAAATTTGATCTGTGATGATAATTGTT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTATAAATATATCTGGACAAAAATTTGATCTGTGATGATAATTGTT  630

seq1  GATAAACCCAGTTAAGGATAAGAGGTGTTTAGGAAAAGGTTTATATAAAT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAACCCAGTTAAGGATAAGAGGTGTTTAGGAAAAGGTTTATATAAAT  680

seq1  GAATGGTGTGAGTCACTTAAATGCATCACTAAACTTTCTTTATAACGATA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGGTGTGAGTCACTTAAATGCATCACTAAACTTTCTTTATAACGATA  730

seq1  AGAGTGAAAGTGCTGTTTAGAATTTTTAGCCAAGTTCATGTATTGCAGGT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTGAAAGTGCTGTTTAGAATTTTTAGCCAAGTTCATGTATTGCAGGT  780

seq1  TTCCCTTCCTCACAAGGTAAACACGTTTGCAGACCCAATGACCGCAGGTC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTTCCTCACAAGGTAAACACGTTTGCAGACCCAATGACCGCAGGTC  830

seq1  AGCACGGTCTAAACCTGCCAGGGTCCCTCCTGAGCTACTGGAAGGTTCTC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACGGTCTAAACCTGCCAGGGTCCCTCCTGAGCTACTGGAAGGTTCTC  880

seq1  CTCCATGGAAGATTATTGATCCCAAGCTGGGCCCCTGCCCATTTTCTGAA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCATGGAAGATTATTGATCCCAAGCTGGGCCCCTGCCCATTTTCTGAA  930

seq1  TTGGGTTGGGTCTCTGGTTCATCTTCCGGTGGTGAGCATGGGAACCAAAG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGTTGGGTCTCTGGTTCATCTTCCGGTGGTGAGCATGGGAACCAAAG  980

seq1  AAAAGTTATTGATGATGAATTC  1020
      ||||||||||||||||||||||
seq2  AAAAGTTATTGATGATGAATTC  1002

seq1: chr9_109828429_109828700
seq2: B6Ng01-024K10.g_73_344

seq1  ACGGTTGGCTGGACTTGGCAGTTTATTCCTTTAATCCCAATACTTGGGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGTTGGCTGGACTTGGCAGTTTATTCCTTTAATCCCAATACTTGGGAG  50

seq1  GCAGAGGCAGGTAGATCTCTGAGTTTGAAGCTGGACAGGTTTACTTGGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGGCAGGTAGATCTCTGAGTTTGAAGCTGGACAGGTTTACTTGGTG  100

seq1  AGTTCCAAGTCATCCAGGACTACATAGTGAGAGTGTGTCTCTAAATAAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCCAAGTCATCCAGGACTACATAGTGAGAGTGTGTCTCTAAATAAAT  150

seq1  AAATAAATAAGTAAATAATCAAGGTCATTCTTAGCTCAGAGGAGATCTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAATAAGTAAATAATCAAGGTCATTCTTAGCTCAGAGGAGATCTGA  200

seq1  AAGCTAGCCTCGGCTAGAAGACTAGTCATTCATATATATATATATATATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTAGCCTCGGCTAGAAGACTAGTCATTCATATATATATATATATATA  250

seq1  TGTATATATATATGTATGTGTG  272
      ||||||||||||||||||||||
seq2  TGTATATATATATGTATGTGTG  272