BAC Information

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BAC

Clone NameB6Ng01-025A01
Chromosome9 (Build37)
Map Location 26,972,846 - 26,974,001
singlet/doubletsinglet
Overlap genenone
Upstream geneB3gat1, BC038479, Glb1l3, Gm1110, LOC330907, Acad8, Thyn1, Vps26b, Ncapd3, Jam3
Downstream geneIgsf9b, Spata19, LOC666440, LOC100041202, Opcml
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-025A01.bB6Ng01-025A01.g
ACCDH856472DH856473
length6231,109
definitionDH856472|Mus musculus domesticus DNA, BAC clone: B6Ng01-025A01, 5' end.DH856473|Mus musculus domesticus DNA, BAC clone: B6Ng01-025A01, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctacaggcttctaccttcttaattctcccctgattacatgagcgg
ttatcctcccccaagcactgaaggtgtgattaacattctatcctgtttgg
ataatcagcttgaaagaacttttagaaatgctttcattcaatcacccata
gaaggagttacagagacaaagtttagagctgagacaaaaggatggaccat
ctagagactgccatatccagggatccatcccataattagcctccaaacga
tgacaccattgcatacactagcaagtgtttgctgcaaggactctgatata
gctgtctcttgtgagactatgccggggcccagcaaacacagaagtggatg
ctcacagtcagctattgcatggatcacagggctcccaatggaggagctag
agaaagtatccaaggagctaaagagatctgcaacccagtaggtacaacat
tatgaactaaccagtaccccggagctcttgactctagctgcatatgtatc
aaaagatggcctagtcggccatcactgcaaagagaggcccattggacttg
caaactttatatgccccagtacaggggaacgccagggccaaaaaaatggg
aatgggtgggtagggaagtgggg

gaattccatccattgttctggtcagaaaatgagatataattaaaattaac
acttcagtatttgttgagagtgattttatgtcttactaatattcaccctt
aaatgtgcttgatgtaattagaaaatgaggtacattcttgatagttgggt
atagggatataaataaatatccattcagttaaatttatctattactctcc
cccaagctccaatatcttcatggagttactctttctggaaatgtacagtt
cagtcaaaattccttttacttttaactaagtggtatacatggtatacacc
agagaactgagccattatggtgatgtctgaaaatatgaggcctccactct
tacagcctccctctttcacctccttttagctcaagaacaatcccctcccc
cattctcaagctccagagagtctgagctgctctcccaaatggctgttaaa
gtattttttcccaaacacatacaatcctctcagtgaacaaaatcatgaca
aatggactgtgtcctgtgatgtgtgtccacgttagatttacgatttccgt
agcatctcttccaacaagagcaacagctcagtgtaagcactacttcctgt
accacaccccacatctacagcatgttgctccttaaacacttttgaagcct
aaataaagagactcatactcacacactggagctataaatgaccaaagaat
ctgaagaataaaggaatatctatccaggtgcagtgacacatgcctttaaa
aagtaagcacaccaaggacaaaaaacagggagagctctttaatttgaagc
cagcctagtctacatatcatcaaaaaagacccaggccaggaacaactgca
taggaataccctatcttaggaaatgataagtaagtgatgtcttcatgctg
agaatgctggagaacatttttttccctgaagatggaaaaaatacctagag
gtttgcccttgaaaggctctgttgttattgtactatgtcagcagcatgga
cagcagtatagactttgttgacaacagatcatttggctattgtggtttca
ttgccacaaattgctattcctactagatttccctgataagctaactgtgc
tggcgggat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_26972846_26974001
seq2: B6Ng01-025A01.g_67_1175

seq1  GAATTCCATCCATTGTTCTGGTCAGAAAATGAGATATAATTAAAATTAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATCCATTGTTCTGGTCAGAAAATGAGATATAATTAAAATTAAC  50

seq1  ACTTCAGTATTTGTTGAGAGTGATTTTATGTCTTACTAATATTCACCCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCAGTATTTGTTGAGAGTGATTTTATGTCTTACTAATATTCACCCTT  100

seq1  AAATGTGCTTGATGTAATTAGAAAATGAGGTACATTCTTGATAGTTGGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTGCTTGATGTAATTAGAAAATGAGGTACATTCTTGATAGTTGGGT  150

seq1  ATAGGGATATAAATAAATATCCATTCAGTTAAATTTATCTATTACTCTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGGATATAAATAAATATCCATTCAGTTAAATTTATCTATTACTCTCC  200

seq1  CCCAAGCTCCAATATCTTCATGGAGTTACTCTTTCTGGAAATGTACAGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAGCTCCAATATCTTCATGGAGTTACTCTTTCTGGAAATGTACAGTT  250

seq1  CAGTCAAAATTCCTTTTACTTTTAACTAAGTGGTATACATGGTATACACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCAAAATTCCTTTTACTTTTAACTAAGTGGTATACATGGTATACACC  300

seq1  AGAGAACTGAGCCATTATGGTGATGTCTGAAAATATGAGGCCTCCACTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAACTGAGCCATTATGGTGATGTCTGAAAATATGAGGCCTCCACTCT  350

seq1  TACAGCCTCCCTCTTTCACCTCCTTTTAGCTCAAGAACAATCCCCTCCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGCCTCCCTCTTTCACCTCCTTTTAGCTCAAGAACAATCCCCTCCCC  400

seq1  CATTCTCAAGCTCCAGAGAGTCTGAGCTGCTCTCCCAAATGGCTGTTAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTCAAGCTCCAGAGAGTCTGAGCTGCTCTCCCAAATGGCTGTTAAA  450

seq1  GTATTTTTTCCCAAACACATACAATCCTCTCAGTGAACAAAATCATGACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTTTTCCCAAACACATACAATCCTCTCAGTGAACAAAATCATGACA  500

seq1  AATGGACTGTGTCCTGTGATGTGTGTCCACGTTAGATTTACGATTTCCGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGACTGTGTCCTGTGATGTGTGTCCACGTTAGATTTACGATTTCCGT  550

seq1  AGCATCTCTTCCAACAAGAGCAACAGCTCAGTGTAAGCACTACTTCCTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATCTCTTCCAACAAGAGCAACAGCTCAGTGTAAGCACTACTTCCTGT  600

seq1  ACCACACCCCACATCTACAGCATGTTGCTCCTTAAACACTTTTGAAGCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACACCCCACATCTACAGCATGTTGCTCCTTAAACACTTTTGAAGCCT  650

seq1  AAATAAAGAGACTCATACTCACACACTGGAGCTATAAATGACCAAAGAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAAGAGACTCATACTCACACACTGGAGCTATAAATGACCAAAGAAT  700

seq1  CTGAAGAATAAAGGAATATCTATCCAGGTGCAGTGACACATGCCTTTAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGAATAAAGGAATATCTATCCAGGTGCAGTGACACATGCCTTTAAA  750

seq1  AAGTAAGCACACCAAGGACAAAAAACAGGGAGAGCTCTTTAAATTTGAAG  800
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  AAGTAAGCACACCAAGGACAAAAAACAGGGAGAGCTCTTT-AATTTGAAG  799

seq1  CCAGCCTAGTCTACATATCATCAAAAAAGACCCAGGCCAGGAACAACTGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCTAGTCTACATATCATCAAAAAAGACCCAGGCCAGGAACAACTGC  849

seq1  ATAGGAATACCCTATCTTAGGAAATGATAAGTAAGTGAATGTCTTCATGC  900
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  ATAGGAATACCCTATCTTAGGAAATGATAAGTAAGTG-ATGTCTTCATGC  898

seq1  TGAGAATGCTGGAGAACATTTTTTTCCCTGAAGATGG-AAAAATACCTAG  949
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TGAGAATGCTGGAGAACATTTTTTTCCCTGAAGATGGAAAAAATACCTAG  948

seq1  AGGTTTGCCCTTGAAGGGCTCTGTTGTAAGTGTACTATGTCAGCAGCATG  999
      ||||||||||||||| ||||||||||| | ||||||||||||||||||||
seq2  AGGTTTGCCCTTGAAAGGCTCTGTTGTTATTGTACTATGTCAGCAGCATG  998

seq1  GACAGGCAGTATCAGACTTTGTTGACAACAGATTCATTGGCTATTGTGGT  1049
      |||| ||||||| ||||||||||||||||||||   ||||||||||||||
seq2  GACA-GCAGTAT-AGACTTTGTTGACAACAGATCATTTGGCTATTGTGGT  1046

seq1  TTCATTGGCCACAATTTGCTATATCCTTCTGATTTTCCTTGATAGGCT-A  1098
      |||||| ||||||| ||||||| |||| ||   ||||| ||||| ||| |
seq2  TTCATT-GCCACAAATTGCTAT-TCCTACTAGATTTCCCTGATAAGCTAA  1094

seq1  CTGTGCTGGCTGG-TTTTGTGTGTCAGCCTGACACAAGCTGGAGTTATTT  1147
      |||||||||| || |                                   
seq2  CTGTGCTGGCGGGAT-----------------------------------  1109

seq1  TAAAGGGAT  1156
               
seq2  ---------  1109


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