BAC Information

Click to search

BAC

Clone NameB6Ng01-027D12
Chromosome9 (Build37)
Map Location 86,537,290 - 86,719,826
singlet/doubletdoublet
Overlap geneMod1, Prss35, Snap91
Upstream geneIbtk, 4933431K14Rik, EG434426, 9330154J02Rik, Tpbg, 2610018I03Rik, Pgm3, Rwdd2
Downstream geneC030002E08Rik, Cyb5r4, LOC666777, LOC244958, LOC100039510, 4922501C03Rik, LOC671706, Tbx18, LOC671731
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-027D12.bB6Ng01-027D12.g
ACCDH858026DH858027
length1,0191,083
definitionDH858026|Mus musculus domesticus DNA, BAC clone: B6Ng01-027D12, 5' end.DH858027|Mus musculus domesticus DNA, BAC clone: B6Ng01-027D12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(86,718,797 - 86,719,826)(86,537,290 - 86,538,396)
sequence
gaattcctcaaggtcgccgaggtaagtggtccaagctttgtggctaaggc
aaccagaacttgtgtgaagcatagtgtctggtcgacaggacatctagcac
atgcccaggatgtgttagcatgagaggaaatcttccagtcacttctcctg
acccatcagagcattgctctacactcctgcctccctgtcagatgagctca
agtagaatgttcataggttatactgctcttcacaagttggtccagtgccc
catcccacctaatgactgctttgttgttgttctattgtaagaaagtttta
tattttgaaccctacatttgcctttagaaaaatctattcattgtttataa
agtataaattatgaatcctcatctcctttaccctgccaatggcttaaata
taattaaaagactaaagtataactgcaaaacacagttggcattcttgaga
ttatctgtaaataggagcttttttctctttcgaaatccagtacttgactc
atgctggtacaagaaatgatgacatcactatacctctggtgggacggcca
gtgggtccttatcttacatgtggactgactgagtgctagagccggggtac
agtgtgacaggctccagactcagtagcaaagccgatgatactgtaggtat
gggacatgggatgtctgtgcttcttattactggaagggtataattgcttg
agttttttctgctacatgggtttattgtttatattttgtatgaccttatc
ccctggtttagccacagttactagtataatccagtgaaaattgttgctcc
agttttttctgtgaaagatgaggtatgtgcagcactctaagcagaaagtt
gcttggcttcccattacctcctgggtcagtgtgtcccagctcccactcgg
tgctctaggggagcaggagctgggcagtgtgcatgtacagtgagcataca
tgtttccaatcagcaacacagctgccccaaagctttatgagaagcttgct
gacacgaagactggttttt
gaattcagagagaagaggcctagtttccagaaggcaagacttcgcaatac
attggcaaggatactcggcaataattctcccagctcttcagaggaatcta
caacgcttactcaggtagctagctacactggggaaaagggctcagatgtt
tagaggattctgtgcacagagtctacagtgatatctggagacttgaaaca
tcaagcagttgctcccgctcctccccttgacagaagcaatgtgaagggca
gtggtaagtggggccccaaccaggtgctctagaagtctcaatgacaccac
aaatctatactgtgtgcgatttctcaactgagatattctaatttcatact
tactgagtgtgttacaatatcttcaggtctttggtctacacaataagagc
tatcacagggcaaacaaagatgatgtcataccacctcatcatccacccca
tctgtaccaatatagtaagttaaaaccccacaacagttttggtggttgga
actaggcataaactaatggatgctaacaaactcagtagtgcaaggagtgg
tcccaactgcattacacgagtgtgcgggcccacgctgaggcacagctctg
cctctgtctgctcgagttcctccttctccctcctacaaggttgttcccaa
tagcacttaatatattccatctcagaaactccaactgcaaaagtcactca
tcaatcatgaatttaagtcatatgtccttttaaaatgaatttctctttat
taccctaacgggataatgcttggttttactcctagtcagcttctaaagga
gcaatatcaaaacaatatattttgaagtctctgctatttttctctaggaa
gggcctaggaggacaactcctcctttccacattttcgtttttgagcagag
tctcactgtataacgcagctaaatagagctcaagtagtctcctgttcagt
tccaattctaggatcgacacgagcaaacatgctggttacaaggtttatgc
ttcaaagacacgttgaggctataactcatttcttttataatctaagacga
tctcccaattcaatattaaaatgaagtgttttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_86718797_86719826
seq2: B6Ng01-027D12.b_46_1064 (reverse)

seq1  AAAAACCAAGTCTCTGTGTCAGCAAGCCTTTCTCCTAAAGCTTTTGGGGG  50
      ||||||| |||||  ||||||||||||  ||||| |||||||||  ||||
seq2  AAAAACC-AGTCTTCGTGTCAGCAAGC--TTCTCATAAAGCTTT--GGGG  45

seq1  CAGCTGTGTTTGCTGATTGGAGACATGTATGCTCACTGTACACTGCACAC  100
      |||||||| |||||||||||| |||||||||||||||||||| |||||||
seq2  CAGCTGTG-TTGCTGATTGGAAACATGTATGCTCACTGTACA-TGCACAC  93

seq1  TGCCCAGCTCCTGCCTCCCCTAGAGCACCGAGTGGGAGCTGGGACACACC  150
      ||||||||||||| |||||||||||||||||||||||||||||||||| |
seq2  TGCCCAGCTCCTG-CTCCCCTAGAGCACCGAGTGGGAGCTGGGACACA-C  141

seq1  TGACCCAGGAGGTAATGGGGAAGCCAAGCAACTTTCTGCTTAGAGTGCCT  200
      |||||||||||||||| |||||||||||||||||||||||||||||| ||
seq2  TGACCCAGGAGGTAAT-GGGAAGCCAAGCAACTTTCTGCTTAGAGTG-CT  189

seq1  GCACATACCTCATCTTTCACAGAAAAAACTGGAGCAACAATTTTCACTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACATACCTCATCTTTCACAGAAAAAACTGGAGCAACAATTTTCACTGG  239

seq1  ATTATACTAGTAACTGTGGCTAAACCAGGGGATAAGGTCATACAAAATAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATACTAGTAACTGTGGCTAAACCAGGGGATAAGGTCATACAAAATAT  289

seq1  AAACAATAAACCCATGTAGCAGAAAAAACTCAAGCAATTATACCCTTCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAATAAACCCATGTAGCAGAAAAAACTCAAGCAATTATACCCTTCCA  339

seq1  GTAATAAGAAGCACAGACATCCCATGTCCCATACCTACAGTATCATCGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATAAGAAGCACAGACATCCCATGTCCCATACCTACAGTATCATCGGC  389

seq1  TTTGCTACTGAGTCTGGAGCCTGTCACACTGTACCCCGGCTCTAGCACTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTACTGAGTCTGGAGCCTGTCACACTGTACCCCGGCTCTAGCACTC  439

seq1  AGTCAGTCCACATGTAAGATAAGGACCCACTGGCCGTCCCACCAGAGGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAGTCCACATGTAAGATAAGGACCCACTGGCCGTCCCACCAGAGGTA  489

seq1  TAGTGATGTCATCATTTCTTGTACCAGCATGAGTCAAGTACTGGATTTCG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGATGTCATCATTTCTTGTACCAGCATGAGTCAAGTACTGGATTTCG  539

seq1  AAAGAGAAAAAAGCTCCTATTTACAGATAATCTCAAGAATGCCAACTGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGAAAAAAGCTCCTATTTACAGATAATCTCAAGAATGCCAACTGTG  589

seq1  TTTTGCAGTTATACTTTAGTCTTTTAATTATATTTAAGCCATTGGCAGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGCAGTTATACTTTAGTCTTTTAATTATATTTAAGCCATTGGCAGGG  639

seq1  TAAAGGAGATGAGGATTCATAATTTATACTTTATAAACAATGAATAGATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGGAGATGAGGATTCATAATTTATACTTTATAAACAATGAATAGATT  689

seq1  TTTCTAAAGGCAAATGTAGGGTTCAAAATATAAAACTTTCTTACAATAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTAAAGGCAAATGTAGGGTTCAAAATATAAAACTTTCTTACAATAGA  739

seq1  ACAACAACAAAGCAGTCATTAGGTGGGATGGGGCACTGGACCAACTTGTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACAACAAAGCAGTCATTAGGTGGGATGGGGCACTGGACCAACTTGTG  789

seq1  AAGAGCAGTATAACCTATGAACATTCTACTTGAGCTCATCTGACAGGGAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGCAGTATAACCTATGAACATTCTACTTGAGCTCATCTGACAGGGAG  839

seq1  GCAGGAGTGTAGAGCAATGCTCTGATGGGTCAGGAGAAGTGACTGGAAGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGAGTGTAGAGCAATGCTCTGATGGGTCAGGAGAAGTGACTGGAAGA  889

seq1  TTTCCTCTCATGCTAACACATCCTGGGCATGTGCTAGATGTCCTGTCGAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTCTCATGCTAACACATCCTGGGCATGTGCTAGATGTCCTGTCGAC  939

seq1  CAGACACTATGCTTCACACAAGTTCTGGTTGCCTTAGCCACAAAGCTTGG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACACTATGCTTCACACAAGTTCTGGTTGCCTTAGCCACAAAGCTTGG  989

seq1  ACCACTTACCTCGGCGACCTTGAGGAATTC  1030
      ||||||||||||||||||||||||||||||
seq2  ACCACTTACCTCGGCGACCTTGAGGAATTC  1019

seq1: chr9_86537290_86538396
seq2: B6Ng01-027D12.g_67_1149

seq1  GAATTCAGAGAGAAGAGGCCTAGTTTCCAGAAGGCAAGACTTCGCAATAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAGAGAAGAGGCCTAGTTTCCAGAAGGCAAGACTTCGCAATAC  50

seq1  ATTGGCAAGGATACTCGGCAATAATTCTCCCAGCTCTTCAGAGGAATCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGCAAGGATACTCGGCAATAATTCTCCCAGCTCTTCAGAGGAATCTA  100

seq1  CAACGCTTACTCAGGTAGCTAGCTACACTGGGGAAAAGGGCTCAGATGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACGCTTACTCAGGTAGCTAGCTACACTGGGGAAAAGGGCTCAGATGTT  150

seq1  TAGAGGATTCTGTGCACAGAGTCTACAGTGATATCTGGAGACTTGAAACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGGATTCTGTGCACAGAGTCTACAGTGATATCTGGAGACTTGAAACA  200

seq1  TCAAGCAGTTGCTCCCGCTCCTCCCCTTGACAGAAGCAATGTGAAGGGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGCAGTTGCTCCCGCTCCTCCCCTTGACAGAAGCAATGTGAAGGGCA  250

seq1  GTGGTAAGTGGGGCCCCAACCAGGTGCTCTAGAAGTCTCAATGACACCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTAAGTGGGGCCCCAACCAGGTGCTCTAGAAGTCTCAATGACACCAC  300

seq1  AAATCTATACTGTGTGCGATTTCTCAACTGAGATATTCTAATTTCATACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTATACTGTGTGCGATTTCTCAACTGAGATATTCTAATTTCATACT  350

seq1  TACTGAGTGTGTTACAATATCTTCAGGTCTTTGGTCTACACAATAAGAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGAGTGTGTTACAATATCTTCAGGTCTTTGGTCTACACAATAAGAGC  400

seq1  TATCACAGGGCAAACAAAGATGATGTCATACCACCTCATCATCCACCCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCACAGGGCAAACAAAGATGATGTCATACCACCTCATCATCCACCCCA  450

seq1  TCTGTACCAATATAGTAAGTTAAAACCCCACAACAGTTTTGGTGGTTGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTACCAATATAGTAAGTTAAAACCCCACAACAGTTTTGGTGGTTGGA  500

seq1  ACTAGGCATAAACTAATGGATGCTAACAAACTCAGTAGTGCAAGGAGTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGGCATAAACTAATGGATGCTAACAAACTCAGTAGTGCAAGGAGTGG  550

seq1  TCCCAACTGCATTACACGAGTGTGCGGGCCCACGCTGAGGCACAGCTCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAACTGCATTACACGAGTGTGCGGGCCCACGCTGAGGCACAGCTCTG  600

seq1  CCTCTGTCTGCTCGAGTTCCTCCTTCTCCCTCCTACAAGGTTGTTCCCAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGTCTGCTCGAGTTCCTCCTTCTCCCTCCTACAAGGTTGTTCCCAA  650

seq1  TAGCACTTAATATATTCCATCTCAGAAACTCCAACTGCAAAAGTCACTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCACTTAATATATTCCATCTCAGAAACTCCAACTGCAAAAGTCACTCA  700

seq1  TCAATCATGAATTTAAGTCATATGTCCTTTTAAAATGAATTTCTCTTTAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATCATGAATTTAAGTCATATGTCCTTTTAAAATGAATTTCTCTTTAT  750

seq1  TACCCTAACGGGATAATGCTTGGTTTTACTCCTAGTCAGCTTCTAAAGGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCTAACGGGATAATGCTTGGTTTTACTCCTAGTCAGCTTCTAAAGGA  800

seq1  GCAATATCAAAACAATATATTTTGAAGTCTCTGCTATTTTTCTCTAGGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATATCAAAACAATATATTTTGAAGTCTCTGCTATTTTTCTCTAGGAA  850

seq1  GGGCCTAGGAGGACAACTCCTCCTTTCCACCATTTTCGTTTCTGAGCAGA  900
      ||||||||||||||||||||||||||||| ||||||||||| ||||||||
seq2  GGGCCTAGGAGGACAACTCCTCCTTTCCA-CATTTTCGTTTTTGAGCAGA  899

seq1  GTCTCACTGTATAACGCAGGCTAAATTAGAGCTCACAGTAGTCCTCCTGT  950
      |||||||||||||||||| |||||| ||||||||| |||||| |||||| 
seq2  GTCTCACTGTATAACGCA-GCTAAA-TAGAGCTCA-AGTAGT-CTCCTG-  944

seq1  TTCAGTTCCCAAATTCCTAGGATCCGACACGAGCAAACATGCCTGGCTAC  1000
      |||||||||  |||| ||||||| ||||||||||||||||| |||| |||
seq2  TTCAGTTCC--AATT-CTAGGAT-CGACACGAGCAAACATG-CTGGTTAC  989

seq1  AGAGGTTTCATGCATCAAAAGACACTGTTGAGTCTATTAATCCTCATTTT  1050
      | |||||| |||| || |||||||| |||||| |||| |   |||| |||
seq2  A-AGGTTT-ATGCTTC-AAAGACAC-GTTGAGGCTATAA---CTCA-TTT  1031

seq1  CTTTTCATATATCTTAAGCAATCTCCCAATTCAATATTTAAAATGTAAGT  1100
      ||||| ||| |||| |  | |||||||||||||||| |||||||| ||| 
seq2  CTTTT-ATA-ATCTAAGACGATCTCCCAATTCAATA-TTAAAATG-AAG-  1076

seq1  TGTTTTC  1107
      |||||||
seq2  TGTTTTC  1083