BAC Information

Click to search

BAC

Clone NameB6Ng01-027M11
Chromosome9 (Build37)16 (Build37)
Map Location 83,134,511 - 83,135,44960,775,989 - 60,776,552
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneIrak1bp1, Phip, LOC100039144, Hmgn3
Downstream geneLOC100039159, 4930431B11Rik, EG619900, LOC100039186, LOC100039200, Sh3bgrl2, LOC100039222, Elovl4, Ttk, EG546150, Bckdhb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-027M11.bB6Ng01-027M11.g
ACCDH858432DH858433
length936831
definitionDH858432|Mus musculus domesticus DNA, BAC clone: B6Ng01-027M11, 5' end.DH858433|Mus musculus domesticus DNA, BAC clone: B6Ng01-027M11, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(83,134,511 - 83,135,449)(60,775,989 - 60,776,552)
sequence
gaattcagtcatcagttacatttcgccaagaattaagtcacccatcagct
gactcaaggcttcaacacatgtctaagctcagagatgctactggtctctt
ccacgacttgttcaagatggatctaacactgatgaaccccatgccaacaa
tttgcttcccaacgtaaagctaacttggagtgtgggagacgcacactgaa
atcattctcctcgtaagcaagagacctgcattatacaacttacgttaact
catcatggtgatgctcttagcattactctctaaacccaccttttccctaa
aagaatacatacatcatcttttaatattctactaccctgaccaaacaaag
aaataacaataatttttattttcatacatactaaaattatttttaggtgg
gttgttaatgattagtaaaaatcttctttccccacagacattatcattaa
cttgggctcacgataagcggccatcacaggctcagaagtggactttaccc
atcttggacacaaagcagtgtttgtaccagaataaaacggaatatgactc
atatacaaatggagaaccttgaagcctatgatgtacattatagaaagcag
aaataggaaatgatgctgtgcattctaggttgatcctttctataattaac
aatgtatttctttcagggttagtctttgtgactcgtgaggtgactacact
aacacctggtgttgataagatggcatgaaaacagccaggtgaggacaaac
cctgagaacatcagtgtcttttggatttttctattagattacatgctacc
tcttccaggaagccctccatgagttttctaatagaattagcttcattctc
ccttataaatctctaaaattggattgtatactatactaactctgaccttt
ctgatattaataataaaaaatgatgtccttaattaa
gaattcctgaactttccaagacttttatcatgaatgggtgttggatcttg
tcaaatgctttttccgcatctaaggagatgatcatgtggtttttgtcttt
gagtttgtttatataatggattacattgatggagtttcatatattaaacc
atccctgcatccctggaataaaacctacttggtcaggatggatgattgct
ttaatatgttcttggattcggttagcaagaattttattgagtatttttgc
attggtattcataagggaaattggtctgaagttctctatctttgttggat
ctttctgtggtttaggtatcagagtaattgtggcttcatagaatgagttg
ggtagagttccctcaacttctattttgtggaatagtttgtgcagaactgg
aattagatcttttttgaaggtctggtagaactctgcactaaacccatctg
gtcttgggctttttttggctgggagactattaataactgcttctatttct
ttaggggatatgggactgtttagatagttaacttgatcctgatttaactt
tggtacctggtatctgtctagaaatttgtccatttcatccaggttttcca
gtttttgttgagtatagccttttgtagaaggatctgatggtgttttggat
ttcttcaggatctgttgttatgtctcccttttcattttctgattttgtta
attaggatgttgtccctatgccctctagtgagtctagcttagggtttatc
tattcttgtttgattttctcaaagaccaacttcttgttttggttaattct
ttgaatatgtccttcttgtttcacgtggttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_83134511_83135449
seq2: B6Ng01-027M11.b_44_979 (reverse)

seq1  TTAATTAATGGCATCATTTTATTATTAATTAATATCAGAAAGGTCAGAGT  50
      |||||||| | ||||||||| ||||| |||||||||||||||||||||||
seq2  TTAATTAAGGACATCATTTT-TTATT-ATTAATATCAGAAAGGTCAGAGT  48

seq1  TAGTATAGTATACAATCCAATTTTAGAGATTTATAAGGGAGAATGAAGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTATAGTATACAATCCAATTTTAGAGATTTATAAGGGAGAATGAAGCT  98

seq1  AATTCTATTTAGAAAACTCATGGAGGGCTTCCTGGAAGAGGTAGCATGTA  150
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTA-TTAGAAAACTCATGGAGGGCTTCCTGGAAGAGGTAGCATGTA  147

seq1  ATCTAATAGAAAAATCCAAAAGACACTGATGTTCTCAGGGTTTGTCCTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAATAGAAAAATCCAAAAGACACTGATGTTCTCAGGGTTTGTCCTCA  197

seq1  CCTGGCTGTTTTCATGCCATCTTATCAACACCAGGTGTTAGTGTAGTCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGCTGTTTTCATGCCATCTTATCAACACCAGGTGTTAGTGTAGTCAC  247

seq1  CTCACGAGTCACAAAGACTAACCCTGAAAGAAATACATTGTTAATTATAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACGAGTCACAAAGACTAACCCTGAAAGAAATACATTGTTAATTATAG  297

seq1  AAAGGATCAACCTAGAATGCACAGCATCATTTCCTATTTCTGCTTTCTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGATCAACCTAGAATGCACAGCATCATTTCCTATTTCTGCTTTCTAT  347

seq1  AATGTACATCATAGGCTTCAAGGTTCTCCATTTGTATATGAGTCATATTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTACATCATAGGCTTCAAGGTTCTCCATTTGTATATGAGTCATATTC  397

seq1  CGTTTTATTCTGGTACAAACACTGCTTTGTGTCCAAGATGGGTAAAGTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTTTATTCTGGTACAAACACTGCTTTGTGTCCAAGATGGGTAAAGTCC  447

seq1  ACTTCTGAGCCTGTGATGGCCGCTTATCGTGAGCCCAAGTTAATGATAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTGAGCCTGTGATGGCCGCTTATCGTGAGCCCAAGTTAATGATAAT  497

seq1  GTCTGTGGGGAAAGAAGATTTTTACTAATCATTAACAACCCACCTAAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGTGGGGAAAGAAGATTTTTACTAATCATTAACAACCCACCTAAAAA  547

seq1  TAATTTTAGTATGTATGAAAATAAAAATTATTGTTATTTCTTTGTTTGGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTTAGTATGTATGAAAATAAAAATTATTGTTATTTCTTTGTTTGGT  597

seq1  CAGGGTAGTAGAATATTAAAAGATGATGTATGTATTCTTTTAGGGAAAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGTAGTAGAATATTAAAAGATGATGTATGTATTCTTTTAGGGAAAAG  647

seq1  GTGGGTTTAGAGAGTAATGCTAAGAGCATCACCATGATGAGTTAACGTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGTTTAGAGAGTAATGCTAAGAGCATCACCATGATGAGTTAACGTAA  697

seq1  GTTGTATAATGCAGGTCTCTTGCTTACGAGGAGAATGATTTCAGTGTGCG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTATAATGCAGGTCTCTTGCTTACGAGGAGAATGATTTCAGTGTGCG  747

seq1  TCTCCCACACTCCAAGTTAGCTTTACGTTGGGAAGCAAATTGTTGGCATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCACACTCCAAGTTAGCTTTACGTTGGGAAGCAAATTGTTGGCATG  797

seq1  GGGTTCATCAGTGTTAGATCCATCTTGAACAAGTCGTGGAAGAGACCAGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTCATCAGTGTTAGATCCATCTTGAACAAGTCGTGGAAGAGACCAGT  847

seq1  AGCATCTCTGAGCTTAGACATGTGTTGAAGCCTTGAGTCAGCTGATGGGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATCTCTGAGCTTAGACATGTGTTGAAGCCTTGAGTCAGCTGATGGGT  897

seq1  GACTTAATTCTTGGCGAAATGTAACTGATGACTGAATTC  939
      |||||||||||||||||||||||||||||||||||||||
seq2  GACTTAATTCTTGGCGAAATGTAACTGATGACTGAATTC  936

seq1: chr16_60775989_60776552
seq2: B6Ng01-027M11.g_332_899 (reverse)

seq1  CAACCAAGTGGAAACAAGAAGAAC-TATTCAAAGAATTAACC-AAACGAG  48
      |||||| || ||||||||||| || ||||||||||||||||| |||| ||
seq2  CAACCACGT-GAAACAAGAAGGACATATTCAAAGAATTAACCAAAACAAG  49

seq1  GAGTTGGTTCTTTGAGAAAATC-AACAAG-ATAGATAAACCCTTAGCTAG  96
       |||||| |||||||||||||| |||||| ||||||||||||| ||||||
seq2  AAGTTGG-TCTTTGAGAAAATCAAACAAGAATAGATAAACCCTAAGCTAG  98

seq1  ACTCACTAAAGGGCACAGGGACAAAATCCTAATTAACAAAATCAG-AAAT  145
      |||||||| |||||| |||||||| |||||||||||||||||||| ||||
seq2  ACTCACTAGAGGGCATAGGGACAACATCCTAATTAACAAAATCAGAAAAT  148

seq1  GAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAG  195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAG  198

seq1  ATCCTTCTACAAAAGGCTATACTCAAC-AAAACTGGAAAACCTGGACGAA  244
      ||||||||||||||||||||||||||| |||||||||||||||||| |||
seq2  ATCCTTCTACAAAAGGCTATACTCAACAAAAACTGGAAAACCTGGATGAA  248

seq1  ATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCA  294
      |||||||||||||| ||||||||||||||||||||||| |||||||||||
seq2  ATGGACAAATTTCTAGACAGATACCAGGTACCAAAGTTAAATCAGGATCA  298

seq1  AGTTGACCATCTAAACAGTCCCATATCACCTAAAGAAATAGAAGCAGTTA  344
      |||| || ||||||||||||||||||| ||||||||||||||||||||||
seq2  AGTTAACTATCTAAACAGTCCCATATCCCCTAAAGAAATAGAAGCAGTTA  348

seq1  TTAATAGTCTCCCAACCAAAAAAAGCCCAGGACCAGATGGGTTTAGTGCA  394
      |||||||||||||| |||||||||||||| ||||||||||||||||||||
seq2  TTAATAGTCTCCCAGCCAAAAAAAGCCCAAGACCAGATGGGTTTAGTGCA  398

seq1  GAGTTCTATCAGACCTTCAAAGAAGATCTAATTCCAATTCTGCACAAACT  444
      |||||||| |||||||||||| |||||||||||||| |||||||||||||
seq2  GAGTTCTACCAGACCTTCAAAAAAGATCTAATTCCAGTTCTGCACAAACT  448

seq1  ATTTCACAAAATAGAAGTAGAAGGTACTCTACCCAACTCATTTTATGAAG  494
      ||| |||||||||||||| || || ||||||||||||||||| |||||||
seq2  ATTCCACAAAATAGAAGTTGAGGGAACTCTACCCAACTCATTCTATGAAG  498

seq1  CCACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAG  544
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAG  548

seq1  AACTTCAGACCAATTTCTCT  564
      ||||||||||||||||| ||
seq2  AACTTCAGACCAATTTCCCT  568