BAC Information

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BAC

Clone NameB6Ng01-030M21
Chromosome9 (Build37)
Map Location 9,234,474 - 9,323,028
singlet/doubletdoublet
Overlap gene9030420J04Rik
Upstream gene1700128F08Rik, Trpc6, Pgr
Downstream geneCntn5, LOC665154, LOC100039970
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-030M21.bB6Ng01-030M21.g
ACCDH860598DH860599
length1,091699
definitionDH860598|Mus musculus domesticus DNA, BAC clone: B6Ng01-030M21, 5' end.DH860599|Mus musculus domesticus DNA, BAC clone: B6Ng01-030M21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(9,234,474 - 9,235,597)(9,322,330 - 9,323,028)
sequence
gaattccaggccagggagagaccttgactctgaaaacaaggtggaaaaca
gaaatgacagccggaagtttcctctgaaacacacacacacacttgacaaa
actgtatatacttatggcacacaaagttccattctgacacatgcgtgtac
cccagaatggctataaggtaatctactcatcacctcatgcgtttccccct
ttaaagtagaatagttgaagtttcatagttattttcaatcccattttctc
ccccaactatccacttcaagaacaaaagttcatttttgttctttctcgag
gattctttaaactaaaagtataaaaaaagactagtacatgggaaaagaca
taagagaataactctgaaatatttcagcacatatgatgctttaaaaggaa
aaacaaataagtaaaaaactgattttatgattgtttaagagtggacagcc
agggctatacagagaaaccctgtctcaaaaaaaaaaaaaaaaaaaaaaag
agccgggcgtggtggcgcacgcctttaatcccagcactcgggaggcagag
gcaggcggatttctgagttcgaggccagcctggtctacaaagtgagttcc
aggacagccagggctacacagagaaaccctgtctcgaaaaaccaaaaaaa
aaaaaaaaaaaaaaaaaaaagagtggagattttgagtcacacatctttga
acaaaacttgagtcactgttatcatgaacattatcaaacacagatataaa
gtacatgacaaaataagcagaaaaccatagcaatggggtttgtagctact
aagtttatagctagcatacctgggattcaaacttaagtcaagctcaaatg
ctgaaccataagcctgtccctcagagtggacacaaaaatgtgtataacac
aggtattttatacatatttaaaatacatcacatgagcctgtcgaccacag
ctatggaaactgaggcagagatcatcagctgaggcattcaacctattctg
ggcactatgagatctcatggggggcgggggatggtcctttccagagacct
gatttgatttaaccatggtggcctcacggtaacttcagtcc

gaattccataaccaacaagatttattgtctaaagttagctgaaattttgg
ctaaagacatttttataactgtatatgcaggtacattattgtattttgct
cacatttatgcatgaaaataatcatagtgaagcccactgttgtatgtgca
cacaaaagaaaacgccagtcagcaatggatagccaagaccaataaaaatt
ataactgtatcctgtgtttccagaaacagactggctaactttgataaatg
gttgtgttacatggattgtgtttatacatgacaaaaacattttttcattc
atacatacacagaatatttagactgacattgactgattgattaacagtgc
catctctgggaagtggaatttcggagttaattttgggacttcttgttcag
ttggcttggttttctctctgtgtccatggattccacatccacctgactaa
ccatatatcaaaattatttgagaaaagaccgcagctgtcttaacatgaag
agatgatataagaacttcttgccgggcatttctatagtgttaagtgcttt
aaataatgtacagaatattttaaaatataggaagatgtgtgtgggttgta
tgaaaatataccattctatataactaactttatgttggttttttagattt
taaaaaattagttctctccttcccccaccatgtggggtgtgtgtgtttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_9234474_9235597
seq2: B6Ng01-030M21.b_45_1135

seq1  GAATTCCAGGCCAGGGAGAGACCTTGACTCTGAAAACAAGGTGGAAAACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGCCAGGGAGAGACCTTGACTCTGAAAACAAGGTGGAAAACA  50

seq1  GAAATGACAGCCGGAAGTTTCCTCTGAAACACACACACACACTTGACAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGACAGCCGGAAGTTTCCTCTGAAACACACACACACACTTGACAAA  100

seq1  ACTGTATATACTTATGGCACACAAAGTTCCATTCTGACACATGCGTGTAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTATATACTTATGGCACACAAAGTTCCATTCTGACACATGCGTGTAC  150

seq1  CCCAGAATGGCTATAAGGTAATCTACTCATCACCTCATGCGTTTCCCCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGAATGGCTATAAGGTAATCTACTCATCACCTCATGCGTTTCCCCCT  200

seq1  TTAAAGTAGAATAGTTGAAGTTTCATAGTTATTTTCAATCCCATTTTCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGTAGAATAGTTGAAGTTTCATAGTTATTTTCAATCCCATTTTCTC  250

seq1  CCCCAACTATCCACTTCAAGAACAAAAGTTCATTTTTGTTCTTTCTCGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAACTATCCACTTCAAGAACAAAAGTTCATTTTTGTTCTTTCTCGAG  300

seq1  GATTCTTTAAACTAAAAGTATAAAAAAAGACTAGTACATGGGAAAAGACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCTTTAAACTAAAAGTATAAAAAAAGACTAGTACATGGGAAAAGACA  350

seq1  TAAGAGAATAACTCTGAAATATTTCAGCACATATGATGCTTTAAAAGGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAGAATAACTCTGAAATATTTCAGCACATATGATGCTTTAAAAGGAA  400

seq1  AAACAAATAAGTAAAAAACTGATTTTATGATTGTTTAAGAGTGGACAGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAATAAGTAAAAAACTGATTTTATGATTGTTTAAGAGTGGACAGCC  450

seq1  AGGGCTATACAGAGAAACCCTGTCTCAAAAAAAAAAAAAAAAAAAAAAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCTATACAGAGAAACCCTGTCTCAAAAAAAAAAAAAAAAAAAAAAAG  500

seq1  AGCCGGGCGTGGTGGCGCACGCCTTTAATCCCAGCACTCGGGAGGCAGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCGGGCGTGGTGGCGCACGCCTTTAATCCCAGCACTCGGGAGGCAGAG  550

seq1  GCAGGCGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAGTTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGCGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAGTTCC  600

seq1  AGGACAGCCAGGGCTACACAGAGAAACCCTGTCTCGAAAAACCAAAAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACAGCCAGGGCTACACAGAGAAACCCTGTCTCGAAAAACCAAAAAAA  650

seq1  AAAAAAAAAAAAAAAAAAAAGAGTGGAGATTTTGAGTCACACATC-TTGA  699
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  AAAAAAAAAAAAAAAAAAAAGAGTGGAGATTTTGAGTCACACATCTTTGA  700

seq1  ACAAAACTTGAGTCACTGTTATCATGAACATTATCAAACACAGATATAAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAACTTGAGTCACTGTTATCATGAACATTATCAAACACAGATATAAA  750

seq1  GTACATGACAAAATAAGCAGAAAACCATAGCAATGAGGTTTGTAGCTACT  799
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  GTACATGACAAAATAAGCAGAAAACCATAGCAATGGGGTTTGTAGCTACT  800

seq1  AAGTTTATAGCTAGCATACCTGGGATTCAAACTTAAGTCAAGCTCAAAAT  849
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  AAGTTTATAGCTAGCATACCTGGGATTCAAACTTAAGTCAAGCTC-AAAT  849

seq1  GCTGAACCATAAGCCTGTCCCTCAGAGTGGACACAAAAATGTGTAATAAC  899
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  GCTGAACCATAAGCCTGTCCCTCAGAGTGGACACAAAAATGTGT-ATAAC  898

seq1  ACAGGTATTTTATACATATTTAAAATACAATCACATGAGCCTGTCAGACC  949
      |||||||||||||||||||||||||||| |||||||||||||||| ||||
seq2  ACAGGTATTTTATACATATTTAAAATAC-ATCACATGAGCCTGTC-GACC  946

seq1  AACAGCTATGGAAACTGAAGGCAAGAAGATCAATCAAGCTGAGGCATTCA  999
       |||||||||||||||| |||||   ||||| ||| ||||||||||||| 
seq2  -ACAGCTATGGAAACTG-AGGCA--GAGATC-ATC-AGCTGAGGCATTC-  989

seq1  AACCTATCCTGGGCAACATATTGAGATCTCATGGGGGGGCGGGGGGGATG  1049
      ||||||| |||||||  |   ||||||||||||||||   | ||||||||
seq2  AACCTATTCTGGGCACTA---TGAGATCTCATGGGGG---GCGGGGGATG  1033

seq1  GCTGCTTTTCCAGAGCACCTGAGTTTGATTCCTACCACCCACATGGTGAC  1099
      |   | ||||||||| |||||| |||||||  || |     ||||||| |
seq2  G--TCCTTTCCAGAG-ACCTGA-TTTGATT--TAAC-----CATGGTGGC  1072

seq1  TCACAACTGTCTAAAACTTCAGTCC  1124
       | | || ||    |||||||||||
seq2  -CTC-ACGGT----AACTTCAGTCC  1091


seq1: chr9_9322330_9323028
seq2: B6Ng01-030M21.g_67_765 (reverse)

seq1  CAAACACACACACCCCACATGGTGGGGGAAGGAGAGAACTAATTTTTTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACACACACACCCCACATGGTGGGGGAAGGAGAGAACTAATTTTTTAA  50

seq1  AATCTAAAAAACCAACATAAAGTTAGTTATATAGAATGGTATATTTTCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTAAAAAACCAACATAAAGTTAGTTATATAGAATGGTATATTTTCAT  100

seq1  ACAACCCACACACATCTTCCTATATTTTAAAATATTCTGTACATTATTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACCCACACACATCTTCCTATATTTTAAAATATTCTGTACATTATTTA  150

seq1  AAGCACTTAACACTATAGAAATGCCCGGCAAGAAGTTCTTATATCATCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCACTTAACACTATAGAAATGCCCGGCAAGAAGTTCTTATATCATCTC  200

seq1  TTCATGTTAAGACAGCTGCGGTCTTTTCTCAAATAATTTTGATATATGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGTTAAGACAGCTGCGGTCTTTTCTCAAATAATTTTGATATATGGT  250

seq1  TAGTCAGGTGGATGTGGAATCCATGGACACAGAGAGAAAACCAAGCCAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCAGGTGGATGTGGAATCCATGGACACAGAGAGAAAACCAAGCCAAC  300

seq1  TGAACAAGAAGTCCCAAAATTAACTCCGAAATTCCACTTCCCAGAGATGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACAAGAAGTCCCAAAATTAACTCCGAAATTCCACTTCCCAGAGATGG  350

seq1  CACTGTTAATCAATCAGTCAATGTCAGTCTAAATATTCTGTGTATGTATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGTTAATCAATCAGTCAATGTCAGTCTAAATATTCTGTGTATGTATG  400

seq1  AATGAAAAAATGTTTTTGTCATGTATAAACACAATCCATGTAACACAACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAAAAATGTTTTTGTCATGTATAAACACAATCCATGTAACACAACC  450

seq1  ATTTATCAAAGTTAGCCAGTCTGTTTCTGGAAACACAGGATACAGTTATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATCAAAGTTAGCCAGTCTGTTTCTGGAAACACAGGATACAGTTATA  500

seq1  ATTTTTATTGGTCTTGGCTATCCATTGCTGACTGGCGTTTTCTTTTGTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTATTGGTCTTGGCTATCCATTGCTGACTGGCGTTTTCTTTTGTGT  550

seq1  GCACATACAACAGTGGGCTTCACTATGATTATTTTCATGCATAAATGTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACATACAACAGTGGGCTTCACTATGATTATTTTCATGCATAAATGTGA  600

seq1  GCAAAATACAATAATGTACCTGCATATACAGTTATAAAAATGTCTTTAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAATACAATAATGTACCTGCATATACAGTTATAAAAATGTCTTTAGC  650

seq1  CAAAATTTCAGCTAACTTTAGACAATAAATCTTGTTGGTTATGGAATTC  699
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATTTCAGCTAACTTTAGACAATAAATCTTGTTGGTTATGGAATTC  699


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