BAC Information

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BAC

Clone NameB6Ng01-031F08
Chromosome9 (Build37)
Map Location 114,138,472 - 114,298,386
singlet/doubletdoublet
Overlap gene4921528I07Rik, Bcl2a1c, 4930520O04Rik, Crtap
Upstream geneLOC100043802, LOC636680, Pdcd6ip, Clasp2, Ubp1, Fbxl2, Susd5, EG665719
Downstream geneGlb1, Ccr4, Trim71, LOC100043808, Cnot10, LOC665772, Dync1li1, Cmtm6, Cmtm7, Cmtm8, Gpd1l, LOC100043813, Osbpl10, LOC100043812, Stt3b, LOC100039567
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-031F08.bB6Ng01-031F08.g
ACCDH860983DH860984
length1,131993
definitionDH860983|Mus musculus domesticus DNA, BAC clone: B6Ng01-031F08, 5' end.DH860984|Mus musculus domesticus DNA, BAC clone: B6Ng01-031F08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(114,138,472 - 114,139,629)(114,297,391 - 114,298,386)
sequence
gaattcaaggcaaggacctggaggcaggaactggtgcacaggccaaggaa
aaattctgtctacctgcttgcttcttatgacttgatgagcctgctttttt
tgccatacctaggaccagtagcccagcaccactgcccaaagggagctggg
ccctccttcatgaatcactaactgagaaaatgaaccacagacttgcccac
tggcttacccacaggccactctggcggtggaggtcattttcccagttgag
gttccctcttcccaaatgactctagcttgtgtcaacttgaagaaataaga
ctcacagaagtgtagaagggatttgagatcaggtaagcaggttttgagtg
agggccctgcctagttttccacttaataatacactatagagttttagccc
aaaagaatattagagaccatgaacttcagtggactttggacaaattgagc
tctctgtgagcctttgaggagtgatgggcctgtgtagtttccagattcaa
ggagcctagtttggacaactctgatgcctgcaatggagactggtttagaa
taggtttaggtgtaagagagacgtggaatgaagaagaagatgttatttta
attatatttggagagaccgtctctcttcctacaagttgtatacagaagga
aactgtgcctgagagtagattcctttaaaaaccactcccaggatgcaaca
gaggcagttggggagatttaagggtattcatcttttcacctgttggcatg
actgagtgttcctcagacctagggtgccattgtgagaagaaagcagggga
ggctggaagcacaaagagcctcaattagtgtcacattggcacagattcag
cagttggttgtaatgtactggacaacataatgtctttcaggtctataatt
tatctgtttggagcctggagggagaagttattccatttgctttgttggag
ttcgtcaaagaccctcactcacaaagaccacagagactgcattgctgcaa
actgcagaggatttttttttattgattcattcattttggggaccccctct
ccgcatactagcagaggagaccagacgatgaagacaacctttaaactgtt
atgagatttgaaccgtgtcctggcttattct
gaattctttatcctcctgcctgcatacctcctgcatgctccacccctccc
agctcctgtgaaaattgtttgcagcctgtgctgaggtagcaaatatgcca
cagggccccagcagagtacttggaactggaaggagggctttgtaaatgcg
gcctgctctttgaggggcaaactcctctgctcagggaagtgtgtgcagat
cccaggttcatctctgctccctctctctgtctctgtctccctctgtcatc
tagaatttaagacagatcatttactgcctcttctctttggctgcttaaat
tctgcctgtgattgcttgctaaaaatagccacaaattgcagctccctgcc
ctctaagtccttgctctgggaggtttgaattcccagttgctggacagaag
ggtgtcagcttgttgggccttcacggggctgaggcagagagagaactctc
aaaacccaatttctactttttctggttaagaaaaaaaaattttttttttg
cttttattaatttaatcaatgtgtgtgcacaagtgggcacacagtgtgca
cgagtgaaggtcagaggacagtttgtggagtctgttgtctcctagcacgt
gggctccaggcgtcgatcttagtcatccggcttggtggcaagcaccttta
tgcactgagccatcttgctggccctcctcttcctcagtgctcttcctcgg
tgcctagatcaagtctcaggtcattggctgcctgcaaagccttcccttct
ctccaactgccagctcagttttcctcacaagtccaaccagccagaggcca
cctcctgccattctccgggcatcagccttgacacctgccctctccagcct
ccccgccttgccacatgaaagccaccattgaatccagatgacttggctca
agtttaggggcattcaggacagattgacgctctcttaataccttattctc
aagaatttgatgtggctacatgctgtctctctgctgctgtctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_114138472_114139629
seq2: B6Ng01-031F08.b_44_1174

seq1  GAATTCAAGGCAAGGACCTGGAGGCAGGAACTGGTGCACAGGCCAAGGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGGCAAGGACCTGGAGGCAGGAACTGGTGCACAGGCCAAGGAA  50

seq1  AAATTCTGTCTACCTGCTTGCTTCTTATGACTTGATGAGCCTGCTTTTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCTGTCTACCTGCTTGCTTCTTATGACTTGATGAGCCTGCTTTTTT  100

seq1  TGCCATACCTAGGACCAGTAGCCCAGCACCACTGCCCAAAGGGAGCTGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCATACCTAGGACCAGTAGCCCAGCACCACTGCCCAAAGGGAGCTGGG  150

seq1  CCCTCCTTCATGAATCACTAACTGAGAAAATGAACCACAGACTTGCCCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCTTCATGAATCACTAACTGAGAAAATGAACCACAGACTTGCCCAC  200

seq1  TGGCTTACCCACAGGCCACTCTGGCGGTGGAGGTCATTTTCCCAGTTGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTACCCACAGGCCACTCTGGCGGTGGAGGTCATTTTCCCAGTTGAG  250

seq1  GTTCCCTCTTCCCAAATGACTCTAGCTTGTGTCAACTTGAAGAAATAAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCCTCTTCCCAAATGACTCTAGCTTGTGTCAACTTGAAGAAATAAGA  300

seq1  CTCACAGAAGTGTAGAAGGGATTTGAGATCAGGTAAGCAGGTTTTGAGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACAGAAGTGTAGAAGGGATTTGAGATCAGGTAAGCAGGTTTTGAGTG  350

seq1  AGGGCCCTGCCTAGTTTTCCACTTAATAATACACTATAGAGTTTTAGCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCCCTGCCTAGTTTTCCACTTAATAATACACTATAGAGTTTTAGCCC  400

seq1  AAAAGAATATTAGAGACCATGAACTTCAGTGGACTTTGGACAAATTGAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAATATTAGAGACCATGAACTTCAGTGGACTTTGGACAAATTGAGC  450

seq1  TCTCTGTGAGCCTTTGAGGAGTGATGGGCCTGTGTAGTTTCCAGATTCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGTGAGCCTTTGAGGAGTGATGGGCCTGTGTAGTTTCCAGATTCAA  500

seq1  GGAGCCTAGTTTGGACAACTCTGATGCCTGCAATGGAGACTGGTTTAGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCCTAGTTTGGACAACTCTGATGCCTGCAATGGAGACTGGTTTAGAA  550

seq1  TAGGTTTAGGTGTAAGAGAGACGTGGAATGAAGAAGAAGATGTTATTTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTTTAGGTGTAAGAGAGACGTGGAATGAAGAAGAAGATGTTATTTTA  600

seq1  ATTATATTTGGAGAGACCGTCTCTCTTCCTACAAGTTGTATACAGAAGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATATTTGGAGAGACCGTCTCTCTTCCTACAAGTTGTATACAGAAGGA  650

seq1  AACTGTGCCTGAGAGTAGATTCCTTTAAAAACCACTCCCAGGATGCAACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGTGCCTGAGAGTAGATTCCTTTAAAAACCACTCCCAGGATGCAACA  700

seq1  GAGGCAGTTGGGGAGATTTAAGGGTATTCATCTTTTCACCTGTTGGCATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCAGTTGGGGAGATTTAAGGGTATTCATCTTTTCACCTGTTGGCATG  750

seq1  ACTGAGTGTTCCTCAGACCTAGGGTGCCATTGTGAGAAGAAAGCAGGGGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGTGTTCCTCAGACCTAGGGTGCCATTGTGAGAAGAAAGCAGGGGA  800

seq1  GGCTGGAAGCACCAAGGAGCCTCAATTAGTGTCACATTGGCACAGATTCA  850
      ||||||||||| ||| ||||||||||||||||||||||||||||||||||
seq2  GGCTGGAAGCA-CAAAGAGCCTCAATTAGTGTCACATTGGCACAGATTCA  849

seq1  GCAGTTGGTTTGTAATGTACTGGACAACATAATGTCTTTCAGGGTCTAAT  900
      |||||||| |||||||||||||||||||||||||||||||| ||||| ||
seq2  GCAGTTGG-TTGTAATGTACTGGACAACATAATGTCTTTCA-GGTCT-AT  896

seq1  AATTTATCTGTTTGGAGCCTGGAGGGAGAAGTTAATTCCATTTTGCTTTG  950
      ||||||||||||||||||||||||||||||||| |||||| |||||||||
seq2  AATTTATCTGTTTGGAGCCTGGAGGGAGAAGTT-ATTCCA-TTTGCTTTG  944

seq1  TTGGAGTTCGTCAAAAGACCCTCACTCACAAAGACCACAGAGACTGCCAT  1000
      |||||||||||| ||||||||||||||||||||||||||||||||| |||
seq2  TTGGAGTTCGTC-AAAGACCCTCACTCACAAAGACCACAGAGACTG-CAT  992

seq1  TGCTGCAAACTGCAAGAGGATTTTTTTTTATTGATTCA-TCATTTTGGGG  1049
      ||||||||||||| |||||||||||||||||||||||| |||||||||||
seq2  TGCTGCAAACTGC-AGAGGATTTTTTTTTATTGATTCATTCATTTTGGGG  1041

seq1  ACCCCCCTCTCAGCACACAGGCCAGAGGAGAGACCCAGAACGATGAAAGA  1099
      | ||||||||| ||| ||  | |||||||||   |||| |||||    ||
seq2  A-CCCCCTCTCCGCATACTAG-CAGAGGAGA---CCAG-ACGAT----GA  1081

seq1  ACACACTTTTTATACCTTGTATAGGGAAGATTTGGACAACAGTGTCGCTG  1149
      | |||   |||| ||  ||| || |  |||||||   ||| ||||| |||
seq2  AGACAACCTTTAAAC--TGT-TATG--AGATTTG---AACCGTGTC-CTG  1122

seq1  GCTTATTCT  1158
      |||||||||
seq2  GCTTATTCT  1131

seq1: chr9_114297391_114298386
seq2: B6Ng01-031F08.g_69_1061 (reverse)

seq1  CAGACAG--ACAGAGAGACAAGCATGTAAGCCACATCAAATTCTTGAGAA  48
      |||||||   ||||||||| ||||||| ||||||||||||||||||||||
seq2  CAGACAGCAGCAGAGAGAC-AGCATGT-AGCCACATCAAATTCTTGAGAA  48

seq1  TAAGGTATTAAGAGAGGCGTCAATCTGTCCCTGAATGCCCCTAAACTTGA  98
      ||||||||||||||| |||||||||||| |||||||||||||||||||||
seq2  TAAGGTATTAAGAGA-GCGTCAATCTGT-CCTGAATGCCCCTAAACTTGA  96

seq1  GCCAAGTCATCTGGATTCAATGGTGGCTTTCATGTGGCAAGGCGGGGAGG  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAGTCATCTGGATTCAATGGTGGCTTTCATGTGGCAAGGCGGGGAGG  146

seq1  CTGGAGAGGGCAGGTGTCAAGGCTGATGCCCGGAGAATGGCAGGAGGTGG  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGAGGGCAGGTGTCAAGGCTGATGCCCGGAGAATGGCAGGAGGTGG  196

seq1  CCTCTGGCTGGTTGGACTTGTGAGGAAAACCTGAGCTGGCAGTTGGAGAG  248
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  CCTCTGGCTGGTTGGACTTGTGAGGAAAA-CTGAGCTGGCAGTTGGAGAG  245

seq1  AAGGGAAGGCTTTGCAGGCAGCCAATGACCTGAGACTTGATCTAGGCACC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGAAGGCTTTGCAGGCAGCCAATGACCTGAGACTTGATCTAGGCACC  295

seq1  GAGGAAGAGCACTGAGGAAGAGGAGGGCCAGCAAGATGGCTCAGTGCATA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAAGAGCACTGAGGAAGAGGAGGGCCAGCAAGATGGCTCAGTGCATA  345

seq1  AAGGTGCTTGCCACCAAGCCGGATGACTAAGATCGACGCCTGGAGCCCAC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTGCTTGCCACCAAGCCGGATGACTAAGATCGACGCCTGGAGCCCAC  395

seq1  GTGCTAGGAGACAACAGACTCCACAAACTGTCCTCTGACCTTCACTCGTG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTAGGAGACAACAGACTCCACAAACTGTCCTCTGACCTTCACTCGTG  445

seq1  CACACTGTGTGCCCACTTGTGCACACACATTGATTAAATTAATAAAAGCA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACTGTGTGCCCACTTGTGCACACACATTGATTAAATTAATAAAAGCA  495

seq1  AAAAAAAAATTTTTTTTTCTTAACCAGAAAAAGTAGAAATTGGGTTTTGA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAATTTTTTTTTCTTAACCAGAAAAAGTAGAAATTGGGTTTTGA  545

seq1  GAGTTCTCTCTCTGCCTCAGCCCCGTGAAGGCCCAACAAGCTGACACCCT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTCTCTCTCTGCCTCAGCCCCGTGAAGGCCCAACAAGCTGACACCCT  595

seq1  TCTGTCCAGCAACTGGGAATTCAAACCTCCCAGAGCAAGGACTTAGAGGG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCCAGCAACTGGGAATTCAAACCTCCCAGAGCAAGGACTTAGAGGG  645

seq1  CAGGGAGCTGCAATTTGTGGCTATTTTTAGCAAGCAATCACAGGCAGAAT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGAGCTGCAATTTGTGGCTATTTTTAGCAAGCAATCACAGGCAGAAT  695

seq1  TTAAGCAGCCAAAGAGAAGAGGCAGTAAATGATCTGTCTTAAATTCTAGA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGCAGCCAAAGAGAAGAGGCAGTAAATGATCTGTCTTAAATTCTAGA  745

seq1  TGACAGAGGGAGACAGAGACAGAGAGAGGGAGCAGAGATGAACCTGGGAT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAGAGGGAGACAGAGACAGAGAGAGGGAGCAGAGATGAACCTGGGAT  795

seq1  CTGCACACACTTCCCTGAGCAGAGGAGTTTGCCCCTCAAAGAGCAGGCCG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCACACACTTCCCTGAGCAGAGGAGTTTGCCCCTCAAAGAGCAGGCCG  845

seq1  CATTTACAAAGCCCTCCTTCCAGTTCCAAGTACTCTGCTGGGGCCCTGTG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTACAAAGCCCTCCTTCCAGTTCCAAGTACTCTGCTGGGGCCCTGTG  895

seq1  GCATATTTGCTACCTCAGCACAGGCTGCAAACAATTTTCACAGGAGCTGG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATATTTGCTACCTCAGCACAGGCTGCAAACAATTTTCACAGGAGCTGG  945

seq1  GAGGGGTGGAGCATGCAGGAGGTATGCAGGCAGGAGGATAAAGAATTC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGGTGGAGCATGCAGGAGGTATGCAGGCAGGAGGATAAAGAATTC  993