BAC Information

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BAC

Clone NameB6Ng01-031O04
Chromosome9 (Build37)
Map Location 88,666,966 - 88,831,842
singlet/doubletdoublet
Overlap geneLOC100039674, EG666731, LOC100039741
Upstream geneLOC100039580, LOC384962, EG272633, Nt5e, Snx14, LOC100039601, Syncrip, 2810026P18Rik, 4930422I07Rik, EG547109, LOC100039707, LOC100039721, Bcl2a1d
Downstream geneBcl2a1a, LOC100039689, EG666747, LOC100039714, 4930579C12Rik, Bcl2a1b, Mthfs, AF529169, Tmed3, B230218L05Rik, Rasgrf1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-031O04.bB6Ng01-031O04.g
ACCDH861376DH861377
length1,0621,020
definitionDH861376|Mus musculus domesticus DNA, BAC clone: B6Ng01-031O04, 5' end.DH861377|Mus musculus domesticus DNA, BAC clone: B6Ng01-031O04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(88,666,966 - 88,668,033)(88,830,818 - 88,831,842)
sequence
gaattcagtaattccgttcaattacataattctatgtaaaagttttgctg
tagcttttaatatgtgaatattgttaatttatctagttcatcagtaggaa
tacaaacacgaatttaaagatgcagttaactgtcatctttgcttttcatt
aactaatggcaaaccagaggaaagctgagacttaccttgtatgactactc
atggcttctcccgcagtaggcatgaatgactgagctgcatgtcagtcagt
ttggtccagacatggatgacagagatgtggaaagtctcaagaatgaggat
gaaatttgaattagataaaggcattcccagtcaggtccattgagagacag
ccctaggagtagtcatcttacaacttgtgcttgggagacaaagggagtgg
gaaagaccattaaggacagagaaatatgtgaagtttctgtgcattttctc
cttcaaatgtatactagttaacagtggcaaggttgagtgtgctgtgcttc
tggctcaggtatttagaggctgtatttcttggaacacttagaccttccaa
cctctgccatgcctaacaccctagtgtgggactcttggttttttaattaa
ttaattatttttacactccatattgtattcccagtccatcccccgactgt
tccacatcccatactttctccccaccccaccccagtgcctccatgtggat
gtccccaccccccactccacctgacctccaaactccctagagtctccagc
ctcttgaggattagatacatgatctctgaataaacacagacccagaagcc
ctctactttatgtatgtgtgttggtggcctcatatcagctggtgtatgct
gtctgtttggtggtctagtgtttgagagatatcgggagtccagaataact
aagactgttcatcctcctacaggatcgcccttctcctcagcttcttcagc
ttcccaaattcacaacagtgataatctgccatttatcattctaatcctaa
ggcatggagccattgaagttctggtttaggaattccctctgtactaagag
ttcaagggtttt
gaattcactttgctgaccaggctggcatcgaactcagaaatatgccagcc
tctgcctcccgagtgcaaggattaaaggcatgcgccaccacaccaggctt
tagaattatgttttgtcatatattatattttagtctacaaagtattttga
atttaaactttagaatttaatgtgtttgtatatacatatgtgtctgtata
tgtttgtatttcctccctcaagattgtgcttcatagacattcctatatat
aaatactgtaacactatgtcacaaacatactaagaaataactaaggttct
cagtatttaaattataaacctcagaaaattggagtggctttacagtggtg
ggataaattatgatataaatcttccactataatgtgtgcctattttcatt
tttaacaaacattcccggtcattttcttactaggtatactttattcatta
aaatgtaggtatgtctcgtccatatatgtgaaggtttagagtgtgtacct
actccatattgaaaatttaaatacaaatctatgatttattctgaattgta
aatatcccaaataggtaacattatgacccacatctatttggagttaggta
tcacccaataagttgattattttgttctgaatgactgatcgctatttcaa
caaaatgaagtagagaatcagatgaattaggctggtgaactaattagaga
gtcagtaaactatttacagaaatccgtgagcatagtgttcgtatatggtg
aacaaaaagattgtatgcagaggtaatcgttctgtgcgtgtagaacatgg
tgctgaaaagatgtaataaacccttctgctgttttcacgtgtgatgtggt
ttatttatcctgacactcctcagagagctataactttctgatgaattggg
caaaacctaaatataaagaaggttcatattttgtgaaaagctaattaacc
agatggaggttaccagtgtacacgtcaggatgtctcagtctgagaagtct
aggcttttctactattatga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_88666966_88668033
seq2: B6Ng01-031O04.b_44_1105

seq1  GAATTCAGTAATTCCGTTCAATTACATAATTCTATGTAAAAGTTTTGCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTAATTCCGTTCAATTACATAATTCTATGTAAAAGTTTTGCTG  50

seq1  TAGCTTTTAATATGTGAATATTGTTAATTTATCTAGTTCATCAGTAGGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTTTTAATATGTGAATATTGTTAATTTATCTAGTTCATCAGTAGGAA  100

seq1  TACAAACACGAATTTAAAGATGCAGTTAACTGTCATCTTTGCTTTTCATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAACACGAATTTAAAGATGCAGTTAACTGTCATCTTTGCTTTTCATT  150

seq1  AACTAATGGCAAACCAGAGGAAAGCTGAGACTTACCTTGTATGACTACTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAATGGCAAACCAGAGGAAAGCTGAGACTTACCTTGTATGACTACTC  200

seq1  ATGGCTTCTCCCGCAGTAGGCATGAATGACTGAGCTGCATGTCAGTCAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCTTCTCCCGCAGTAGGCATGAATGACTGAGCTGCATGTCAGTCAGT  250

seq1  TTGGTCCAGACATGGATGACAGAGATGTGGAAAGTCTCAAGAATGAGGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTCCAGACATGGATGACAGAGATGTGGAAAGTCTCAAGAATGAGGAT  300

seq1  GAAATTTGAATTAGATAAAGGCATTCCCAGTCAGGTCCATTGAGAGACAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTTGAATTAGATAAAGGCATTCCCAGTCAGGTCCATTGAGAGACAG  350

seq1  CCCTAGGAGTAGTCATCTTACAACTTGTGCTTGGGAGACAAAGGGAGTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTAGGAGTAGTCATCTTACAACTTGTGCTTGGGAGACAAAGGGAGTGG  400

seq1  GAAAGACCATTAAGGACAGAGAAATATGTGAAGTTTCTGTGCATTTTCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGACCATTAAGGACAGAGAAATATGTGAAGTTTCTGTGCATTTTCTC  450

seq1  CTTCAAATGTATACTAGTTAACAGTGGCAAGGTTGAGTGTGCTGTGCTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAAATGTATACTAGTTAACAGTGGCAAGGTTGAGTGTGCTGTGCTTC  500

seq1  TGGCTCAGGTATTTAGAGGCTGTATTTCTTGGAACACTTAGACCTTCCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTCAGGTATTTAGAGGCTGTATTTCTTGGAACACTTAGACCTTCCAA  550

seq1  CCTCTGCCATGCCTAACACCCTAGTGTGGGACTCTTGGTTTTTTAATTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGCCATGCCTAACACCCTAGTGTGGGACTCTTGGTTTTTTAATTAA  600

seq1  TTAATTATTTTTACACTCCATATTGTATTCCCAGTCCATCCCCCGACTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTATTTTTACACTCCATATTGTATTCCCAGTCCATCCCCCGACTGT  650

seq1  TCCACATCCCATACTTTCTCCCCACCCCACCCCAGTGCCTCCATGTGGAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACATCCCATACTTTCTCCCCACCCCACCCCAGTGCCTCCATGTGGAT  700

seq1  GTCCCCACCCCCCACTCCACCTGACCTCCAAACTCCCTAGAGTCTCCAGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCCACCCCCCACTCCACCTGACCTCCAAACTCCCTAGAGTCTCCAGC  750

seq1  CTCTTGAGGATTAGATACATGATCTCTGAATAAACACAGACCCAGAAGCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTGAGGATTAGATACATGATCTCTGAATAAACACAGACCCAGAAGCC  800

seq1  CTCTACTTTATGTATGTGTGTTGGTGGCCTCATATCAGCTGGTGTATGCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTACTTTATGTATGTGTGTTGGTGGCCTCATATCAGCTGGTGTATGCT  850

seq1  GTCTGTTTGGTGGTCTAGTGTTTGAGAGATATCGGGAGTCCAGAATAACT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGTTTGGTGGTCTAGTGTTTGAGAGATATCGGGAGTCCAGAATAACT  900

seq1  AAGACTGTTCATCCTCCTACAGGATCGCCCTTCTCCTCAGCTTCTTTCAG  950
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  AAGACTGTTCATCCTCCTACAGGATCGCCCTTCTCCTCAGCTTC-TTCAG  949

seq1  CCTTCCCAAATTCAACAACAGTGGTTATCTTGCCATTTATCAATTCTTAA  1000
       |||||||||||| ||||||||| | ||| ||||||||||| |||| |||
seq2  -CTTCCCAAATTC-ACAACAGTGATAATC-TGCCATTTATC-ATTC-TAA  994

seq1  TCTTAGAGCAT-GAGCCATTGGAGTTCT-GTTTAGGAAATTTCCTCCTGT  1048
      || ||  |||| ||||||||| |||||| |||||||||  ||||  ||||
seq2  TCCTAAGGCATGGAGCCATTGAAGTTCTGGTTTAGGAA--TTCCCTCTGT  1042

seq1  TCTAAGAGTTCAAGGGTTTT  1068
       |||||||||||||||||||
seq2  ACTAAGAGTTCAAGGGTTTT  1062

seq1: chr9_88830818_88831842
seq2: B6Ng01-031O04.g_68_1087 (reverse)

seq1  TCATAA-AGTAGATAATGCCTAGGACTTCTACAGACTTGAGACATCCTGA  49
      |||||| |||||| || ||||| ||||||| ||||| |||||||||||||
seq2  TCATAATAGTAGA-AAAGCCTA-GACTTCT-CAGAC-TGAGACATCCTGA  46

seq1  CGTGTACACTGGTAACCTACCATCTTGGTTAATTAGCTTTTCAC-AAATA  98
      |||||||||||||||||| ||||| ||||||||||||||||||| |||||
seq2  CGTGTACACTGGTAACCT-CCATC-TGGTTAATTAGCTTTTCACAAAATA  94

seq1  TGAACC-TCTTTATATTTAGGTTTTGCCCAATTCATCAAGAAAGTTATAG  147
      |||||| |||||||||||||||||||||||||||||| ||||||||||||
seq2  TGAACCTTCTTTATATTTAGGTTTTGCCCAATTCATC-AGAAAGTTATAG  143

seq1  CTCTCTGAAGGAGTGTCAGGATAAATAAACCACATCACACGTGAAAACAG  197
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTG-AGGAGTGTCAGGATAAATAAACCACATCACACGTGAAAACAG  192

seq1  CAGGAAGGGTTAATACATCTTTTCAGCACCATGTTTCTACACGCACAGAA  247
      ||| | || ||| |||||||||||||||||||| ||||||||||||||||
seq2  CAGAAGGGTTTATTACATCTTTTCAGCACCATG-TTCTACACGCACAGAA  241

seq1  CGATTACCTCTGCATACAATTCTTTTTGTTCACCATATACGAACACTATG  297
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  CGATTACCTCTGCATACAA-TCTTTTTGTTCACCATATACGAACACTATG  290

seq1  CTCACGGATTTCTGTAAATAG-TTACTGACTCTCTAATTAGTTCACCAGC  346
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  CTCACGGATTTCTGTAAATAGTTTACTGACTCTCTAATTAGTTCACCAGC  340

seq1  CTAATTCATCTGATTCTCTACTTCA-TTTGTTGAAATAGCGATCAGTCAT  395
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  CTAATTCATCTGATTCTCTACTTCATTTTGTTGAAATAGCGATCAGTCAT  390

seq1  TCAGAACAAAATAATCAACTTATTGGGTGATACCTAACTCCAAATAGATG  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAACAAAATAATCAACTTATTGGGTGATACCTAACTCCAAATAGATG  440

seq1  TGGGTCATAATGTTACCTATTTGGGATATTTACAATTCAGAATAAATCAT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTCATAATGTTACCTATTTGGGATATTTACAATTCAGAATAAATCAT  490

seq1  AGATTTGTATTTAAATTTTCAATATGGAGTAGGTACACACTCTAAACCTT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTGTATTTAAATTTTCAATATGGAGTAGGTACACACTCTAAACCTT  540

seq1  CACATATATGGACGAGACATACCTACATTTTAATGAATAAAGTATACCTA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATATATGGACGAGACATACCTACATTTTAATGAATAAAGTATACCTA  590

seq1  GTAAGAAAATGACCGGGAATGTTTGTTAAAAATGAAAATAGGCACACATT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGAAAATGACCGGGAATGTTTGTTAAAAATGAAAATAGGCACACATT  640

seq1  ATAGTGGAAGATTTATATCATAATTTATCCCACCACTGTAAAGCCACTCC  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTGGAAGATTTATATCATAATTTATCCCACCACTGTAAAGCCACTCC  690

seq1  AATTTTCTGAGGTTTATAATTTAAATACTGAGAACCTTAGTTATTTCTTA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTCTGAGGTTTATAATTTAAATACTGAGAACCTTAGTTATTTCTTA  740

seq1  GTATGTTTGTGACATAGTGTTACAGTATTTATATATAGGAATGTCTATGA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGTTTGTGACATAGTGTTACAGTATTTATATATAGGAATGTCTATGA  790

seq1  AGCACAATCTTGAGGGAGGAAATACAAACATATACAGACACATATGTATA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACAATCTTGAGGGAGGAAATACAAACATATACAGACACATATGTATA  840

seq1  TACAAACACATTAAATTCTAAAGTTTAAATTCAAAATACTTTGTAGACTA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAACACATTAAATTCTAAAGTTTAAATTCAAAATACTTTGTAGACTA  890

seq1  AAATATAATATATGACAAAACATAATTCTAAAGCCTGGTGTGGTGGCGCA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATAATATATGACAAAACATAATTCTAAAGCCTGGTGTGGTGGCGCA  940

seq1  TGCCTTTAATCCTTGCACTCGGGAGGCAGAGGCTGGCATATTTCTGAGTT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTTAATCCTTGCACTCGGGAGGCAGAGGCTGGCATATTTCTGAGTT  990

seq1  CGATGCCAGCCTGGTCAGCAAAGTGAATTC  1025
      ||||||||||||||||||||||||||||||
seq2  CGATGCCAGCCTGGTCAGCAAAGTGAATTC  1020