BAC Information

Click to search

BAC

Clone NameB6Ng01-032J14
Chromosome9 (Build37)
Map Location 111,273,678 - 111,386,983
singlet/doubletdoublet
Overlap geneLba1, Dclk3
Upstream geneScap, Ptpn23, Ngp, Klhl18, Kif9, Setd2, Nradd, Nbeal2, Ccdc12, Pthr1, Myl3, 9430025E04Rik, LOC665549, Tessp2, 1700036D21Rik, Tessp3, BC107230, 1700112C13Rik, Tsp50, Tmie, Als2cl, Gm590, Tdgf1, Lrrc2, Rtp3, ENSMUSG00000057802, Ltf, Ccrl2, LOC100039275, Lrrfip2, Mlh1, Epm2aip1
Downstream geneLOC620615, Stac, 4930545L08Rik, Arpp21, LOC100039341, LOC620760
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-032J14.bB6Ng01-032J14.g
ACCDH861885DH861886
length1,191699
definitionDH861885|Mus musculus domesticus DNA, BAC clone: B6Ng01-032J14, 5' end.DH861886|Mus musculus domesticus DNA, BAC clone: B6Ng01-032J14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(111,385,780 - 111,386,983)(111,273,678 - 111,274,374)
sequence
gaattccttggttgtgagtgagttctctggctggagtagcaagcagactg
cctccaggttcctgccttgcatgcccacccaggcttccataagtgactga
ctgtgacctggaatgcaagacaaaataaaccttttctttacctaagtggc
ttttgctcatggtattcaccacaggaacaggatggaactggaccagtgac
gtccagttgagttttctatgtacatcacctatgtacctccctacacaggc
atatacacattttcaagaactttctgactgctcaccgttaggagtgaaca
caacaggcagctttaaatggacatgagaagttcattactaagcctttgag
caggtttatcaagacacaagtcagtaagagcctaaatcgaataaagttcc
tgatggcccctttggggacagctcagtgatgagagttcaattctcaagga
ctgttgattcttgagggacagattcttctgccccggcccctcttaagatt
ttccctttgcctgtggaatgtgtgcatccctaatccagtcccatcttcca
tgcagcccagctctctcctgactgccttccctcctacctgtgacttccct
gaatcagagcttaactgtccctgctctgatgtcacaacagagccacccac
tcaccagtttagccatcggatagaagaatcccaatatgatacatttgatc
caggtcatcccttccttgccgtcaggacaacagtgtgggtctgtactgat
gtctcttgatcagtgtgatgaaaatttaactcctcccacctcatttcctc
agagaactttttcccaacaccccattttagccagtgtgctttccccacac
actcacactattttgctttgtctcttatctaattcatctttgcttgcatt
acaaatgtcctatgtcttccactgttctcagacacctgtcattcaaaatc
taaacacttcctgttttgggataagtctaggctccgcttacccaacccac
tgactctaaaggcagtagacttctcagtctccactgaatcctcacacaag
cttctgtctcctcctcccagcttctgggaactatcctgcctctacccatg
accagctttcagcacccagaatctgttcaagctacggtaattaatcatat
ggcacagcaagtacttcccaatattttctgtttatatgcca
gaattccagttgttcagcaaagtacttttatgcccctcttgggctcctcc
atcagtgtaaatttttggccattgctagttcttaactaacagaaaatgac
agtggcaacagattttcttaggaacagcagttgataattatgttcattat
tactatatattggaaatttgtaagaattaaagaattaggtaatacatttt
atcttcactatttgataatagttgtgacaacacatgcagtttttcagtgc
tctgccttaatctacttggtgttaggcaatgacagatggcttctaaggga
attagagagacccaagaagataggtatccagtgtacttgagatcccatca
cttagagggggttagttatttctcaggcggtggaatccattagtaacatc
tccatggttttgtctggcccattgggttcttgtaatggttttatggagtg
attgttatgagggtgactattgtatctcagactttagtcaggattacttt
acagcactgataagaaatgagacctgattggggaaaggaaaaaaaaaact
ttttgaaaagtctgttctctagttctgacaatttccctttgtacagtcct
attttcagctgtgtaaacctggagaattaggatgatagaggccttggttg
tctccagttaacaattccctcatgctcttaccatggaaatgttgcttct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_111385780_111386983
seq2: B6Ng01-032J14.b_47_1237 (reverse)

seq1  TGGCAATATAAACAGGAAATATATGGAAGATAACTTGCTGTGGCATTATG  50
      |||| |||||||||| ||||||  |||||   |||||||||| || ||||
seq2  TGGC-ATATAAACAGAAAATATTGGGAAG--TACTTGCTGTGCCA-TATG  46

seq1  AAGTGAATTTACCCGTTAGCTGAGACAGAGATTCTGGGTGGCTTGAAAGC  100
      |  | || |||||   |||||   ||  ||||||||||||   |||||||
seq2  A--TTAA-TTACC--GTAGCTTGAAC--AGATTCTGGGTG--CTGAAAGC  87

seq1  TTGGTCATGGGTAGGAGGCAGGGTAGTTCCCAGGAGCTGTGAGGAGGAGA  150
       |||||||||||| |||||||| |||||||||| ||||| ||||||||||
seq2  -TGGTCATGGGTA-GAGGCAGGATAGTTCCCAGAAGCTGGGAGGAGGAGA  135

seq1  CAG-AGCTTGTGTGAGGTTTCAGTGGAGACTTGAGAAGTCTTACTGCCTT  199
      ||| ||||||||||||| |||||||||||| ||||||||| |||||||||
seq2  CAGAAGCTTGTGTGAGGATTCAGTGGAGAC-TGAGAAGTC-TACTGCCTT  183

seq1  TAGAGTCAGTGGGTTGGGTAGGCGGAGCCTAGACTTATCCC-AAACAGGA  248
      |||||||||||||||||||| |||||||||||||||||||| ||||||||
seq2  TAGAGTCAGTGGGTTGGGTAAGCGGAGCCTAGACTTATCCCAAAACAGGA  233

seq1  AGTGTTTAGATTTTGAATGACAGGTGTCTGAGAACAGTGGAAGACATAGG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTTTAGATTTTGAATGACAGGTGTCTGAGAACAGTGGAAGACATAGG  283

seq1  ACA-TTGTAATGCAAGCAAAGATGAATTAGATAAGAGACAAAGCAAATTA  347
      ||| ||||||||||||||||||||||||||||||||||||||||||| ||
seq2  ACATTTGTAATGCAAGCAAAGATGAATTAGATAAGAGACAAAGCAAAATA  333

seq1  GTGTGAGTGTGTGGGGAAAGCACACTGGCTAAAATGGGGTGTTGGGAAAA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGAGTGTGTGGGGAAAGCACACTGGCTAAAATGGGGTGTTGGGAAAA  383

seq1  AGTTCTCTGAGGAAATGAGGTGGGAGGAGTTAAATTTTCATCACACTGAT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTCTGAGGAAATGAGGTGGGAGGAGTTAAATTTTCATCACACTGAT  433

seq1  CAAGAGACATCAGTACAGACCCACACTGTTGTCCTGACGGCAAGGAAGGG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAGACATCAGTACAGACCCACACTGTTGTCCTGACGGCAAGGAAGGG  483

seq1  ATGACCTGGATC-AATGTATCATATTGGGATTCTTCTATCCGATGGCTAA  546
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  ATGACCTGGATCAAATGTATCATATTGGGATTCTTCTATCCGATGGCTAA  533

seq1  ACTGGTGAGTGGGTGGCTCTGTTGTGACATCAGAGCAGGGACAGTTAAGC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGTGAGTGGGTGGCTCTGTTGTGACATCAGAGCAGGGACAGTTAAGC  583

seq1  TCTGATTCAGGGAAGTCACAGGTAGGAGGGAAGGCAGTCAGGAGAGAGCT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGATTCAGGGAAGTCACAGGTAGGAGGGAAGGCAGTCAGGAGAGAGCT  633

seq1  GGGCTGCATGGAAGATGGGACTGGATTAGGGATGCACACATTCCACAGGC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTGCATGGAAGATGGGACTGGATTAGGGATGCACACATTCCACAGGC  683

seq1  AAAGGGAAAATCTTAAGAGGGGCCGGGGCAGAAGAATCTGTCCCTCAAGA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGAAAATCTTAAGAGGGGCCGGGGCAGAAGAATCTGTCCCTCAAGA  733

seq1  ATCAACAGTCCTTGAGAATTGAACTCTCATCACTGAGCTGTCCCCAAAGG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAACAGTCCTTGAGAATTGAACTCTCATCACTGAGCTGTCCCCAAAGG  783

seq1  GGCCATCAGGAACTTTATTCGATTTAGGCTCTTACTGACTTGTGTCTTGA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCATCAGGAACTTTATTCGATTTAGGCTCTTACTGACTTGTGTCTTGA  833

seq1  TAAACCTGCTCAAAGGCTTAGTAATGAACTTCTCATGTCCATTTAAAGCT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACCTGCTCAAAGGCTTAGTAATGAACTTCTCATGTCCATTTAAAGCT  883

seq1  GCCTGTTGTGTTCACTCCTAACGGTGAGCAGTCAGAAAGTTCTTGAAAAT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGTTGTGTTCACTCCTAACGGTGAGCAGTCAGAAAGTTCTTGAAAAT  933

seq1  GTGTATATGCCTGTGTAGGGAGGTACATAGGTGATGTACATAGAAAACTC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTATATGCCTGTGTAGGGAGGTACATAGGTGATGTACATAGAAAACTC  983

seq1  AACTGGACGTCACTGGTCCAGTTCCATCCTGTTCCTGTGGTGAATACCAT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGGACGTCACTGGTCCAGTTCCATCCTGTTCCTGTGGTGAATACCAT  1033

seq1  GAGCAAAAGCCACTTAGGTAAAGAAAAGGTTTATTTTGTCTTGCATTCCA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAAAAGCCACTTAGGTAAAGAAAAGGTTTATTTTGTCTTGCATTCCA  1083

seq1  GGTCACAGTCAGTCACTTATGGAAGCCTGGGTGGGCATGCAAGGCAGGAA  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCACAGTCAGTCACTTATGGAAGCCTGGGTGGGCATGCAAGGCAGGAA  1133

seq1  CCTGGAGGCAGTCTGCTTGCTACTCCAGCCAGAGAACTCACTCACAACCA  1196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGAGGCAGTCTGCTTGCTACTCCAGCCAGAGAACTCACTCACAACCA  1183

seq1  AGGAATTC  1204
      ||||||||
seq2  AGGAATTC  1191

seq1: chr9_111273678_111274374
seq2: B6Ng01-032J14.g_64_762

seq1  GAATTCCAGTTGTTCAGCAAAGTACTTTTATGCCCCTCTTGGGCTCCTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGTTGTTCAGCAAAGTACTTTTATGCCCCTCTTGGGCTCCTCC  50

seq1  ATCAGTGTAAATTTTTGGCCATTGCTAGTTCTTAACTAACAGAAAATGAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGTGTAAATTTTTGGCCATTGCTAGTTCTTAACTAACAGAAAATGAC  100

seq1  AGTGGCAACAGATTTTCTTAGGAACAGCAGTTGATAATTATGTTCATTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGCAACAGATTTTCTTAGGAACAGCAGTTGATAATTATGTTCATTAT  150

seq1  TACTATATATTGGAAATTTGTAAGAATTAAAGAATTAGGTAATACATTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTATATATTGGAAATTTGTAAGAATTAAAGAATTAGGTAATACATTTT  200

seq1  ATCTTCACTATTTGATAATAGTTGTGACAACACATGCAGTTTTTCAGTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTCACTATTTGATAATAGTTGTGACAACACATGCAGTTTTTCAGTGC  250

seq1  TCTGCCTTAATCTACTTGGTGTTAGGCAATGACAGATGGCTTCTAAGGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCTTAATCTACTTGGTGTTAGGCAATGACAGATGGCTTCTAAGGGA  300

seq1  ATTAGAGAGACCCAAGAAGATAGGTATCCAGTGTACTTGAGATCCCATCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGAGAGACCCAAGAAGATAGGTATCCAGTGTACTTGAGATCCCATCA  350

seq1  CTTAGAGGGGGTTAGTTATTTCTCAGGCGGTGGAATCCATTAGTAACATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGAGGGGGTTAGTTATTTCTCAGGCGGTGGAATCCATTAGTAACATC  400

seq1  TCCATGGTTTTGTCTGGCCCATTGGGTTCTTGTAATGGTTTTATGGAGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATGGTTTTGTCTGGCCCATTGGGTTCTTGTAATGGTTTTATGGAGTG  450

seq1  ATTGTTATGAGGGTGACTATTGTATCTCAGACTTTAGTCAGGATTACTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTATGAGGGTGACTATTGTATCTCAGACTTTAGTCAGGATTACTTT  500

seq1  ACAGCACTGATAAGAAATGAGACCTGATTGGGGAAAGGAAAAAAAAAACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCACTGATAAGAAATGAGACCTGATTGGGGAAAGGAAAAAAAAAACT  550

seq1  TTTTGAAAAGTCTGTTCTCTAGTTCTGACAATTTCCCTTTGTACAGTCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGAAAAGTCTGTTCTCTAGTTCTGACAATTTCCCTTTGTACAGTCCT  600

seq1  A-TTTCAGCTGTGTAAACCTGGAGAATTAGGATGATAGAGGCCTTGGTTG  649
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCAGCTGTGTAAACCTGGAGAATTAGGATGATAGAGGCCTTGGTTG  650

seq1  TCTCCAGTTAACAATT-CCTCATGCTCTTACCATGGAAATGTTGCTTCT  697
      |||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TCTCCAGTTAACAATTCCCTCATGCTCTTACCATGGAAATGTTGCTTCT  699